SLC26A1 (solute carrier family 26 member 1) - Rat Genome Database

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Gene: SLC26A1 (solute carrier family 26 member 1) Sus scrofa
Analyze
Symbol: SLC26A1
Name: solute carrier family 26 member 1
RGD ID: 14015448
Description: ENCODES a protein that exhibits sulfate transmembrane transporter activity (ortholog); sulfate:bicarbonate antiporter activity (ortholog); INVOLVED IN carboxylic acid transmembrane transport (ortholog); chloride transport (ortholog); oxalate transport (ortholog); ASSOCIATED WITH calcium oxalate nephrolithiasis (ortholog); Calcium Oxalate Nephrolithiasis 1 (ortholog); carbohydrate metabolic disorder (ortholog); FOUND IN basolateral plasma membrane (ortholog); plasma membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: sulfate anion transporter 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl8335,427 - 342,444 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.18335,420 - 345,955 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
SLC26A1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl8335,427 - 342,444 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.18335,420 - 345,955 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
SLC26A1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh384978,991 - 993,404 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl4979,073 - 993,440 (-)EnsemblGRCh38hg38GRCh38
GRCh374972,823 - 987,192 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 364962,861 - 977,224 (-)NCBINCBI36Build 36hg18NCBI36
Build 344971,274 - 977,013NCBI
Celera4909,807 - 924,170 (-)NCBICelera
Cytogenetic Map4p16.3NCBI
HuRef4944,081 - 958,446 (-)NCBIHuRef
CHM1_14972,645 - 987,011 (-)NCBICHM1_1
T2T-CHM13v2.04977,118 - 991,535 (-)NCBIT2T-CHM13v2.0
Slc26a1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395108,817,744 - 108,826,246 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5108,817,744 - 108,823,435 (-)EnsemblGRCm39 Ensembl
GRCm385108,669,878 - 108,678,380 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5108,669,878 - 108,675,569 (-)EnsemblGRCm38mm10GRCm38
MGSCv375109,099,560 - 109,104,668 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv365108,910,180 - 108,915,871 (-)NCBIMGSCv36mm8
Celera5105,792,486 - 105,798,328 (-)NCBICelera
Cytogenetic Map5FNCBI
cM Map553.24NCBI
Slc26a1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8141,180,465 - 1,190,257 (+)NCBIGRCr8
mRatBN7.2141,040,565 - 1,045,851 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl141,040,243 - 1,045,849 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx14940,390 - 945,676 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0142,242,167 - 2,247,453 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.014938,860 - 944,146 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0142,050,805 - 2,056,091 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl142,050,483 - 2,056,089 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0142,046,346 - 2,051,632 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4141,581,589 - 1,586,875 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1141,581,266 - 1,586,873 (+)NCBI
Celera141,079,905 - 1,085,191 (+)NCBICelera
Cytogenetic Map14p22NCBI
Slc26a1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955514475,731 - 479,616 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955514476,062 - 484,710 (-)NCBIChiLan1.0ChiLan1.0
SLC26A1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v231,305,579 - 1,320,531 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan141,273,068 - 1,293,527 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v041,102,938 - 1,112,987 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.141,021,157 - 1,026,402 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl41,012,920 - 1,026,402 (-)Ensemblpanpan1.1panPan2
SLC26A1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1391,528,045 - 91,534,104 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl391,485,270 - 91,534,115 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha393,996,593 - 94,000,624 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0392,526,061 - 92,532,133 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.1391,699,880 - 91,705,945 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0391,752,838 - 91,758,900 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0392,136,646 - 92,142,712 (+)NCBIUU_Cfam_GSD_1.0
Slc26a1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440528568,507,763 - 68,519,289 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647722,208,451 - 22,213,592 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647722,209,445 - 22,213,592 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLC26A1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12747,787,201 - 47,802,834 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2747,789,705 - 47,793,743 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366680862,915 - 72,446 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Slc26a1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475526,164,795 - 26,169,365 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475526,162,730 - 26,168,443 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in SLC26A1
63 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 2
Low 6 3 3 5 2 8 3 3
Below cutoff 4 1 15

Sequence


RefSeq Acc Id: ENSSSCT00000048629   ⟹   ENSSSCP00000047223
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl8335,427 - 342,444 (-)Ensembl
RefSeq Acc Id: XM_021100845   ⟹   XP_020956504
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.18335,420 - 345,954 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021100846   ⟹   XP_020956505
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.18335,420 - 340,654 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021100848   ⟹   XP_020956507
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.18335,420 - 342,458 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021100849   ⟹   XP_020956508
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.18335,420 - 345,954 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021100850   ⟹   XP_020956509
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.18335,420 - 345,955 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021100851   ⟹   XP_020956510
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.18335,420 - 345,955 (-)NCBI
Sequence:
RefSeq Acc Id: XP_020956510   ⟸   XM_021100851
- UniProtKB: A0A287ATM3 (UniProtKB/TrEMBL),   A0A8D1ZRY2 (UniProtKB/TrEMBL),   A0A8D1JQJ4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020956509   ⟸   XM_021100850
- UniProtKB: A0A287ATM3 (UniProtKB/TrEMBL),   A0A8D1ZRY2 (UniProtKB/TrEMBL),   A0A8D1JQJ4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020956504   ⟸   XM_021100845
- UniProtKB: A0A287ATM3 (UniProtKB/TrEMBL),   A0A8D1ZRY2 (UniProtKB/TrEMBL),   A0A8D1JQJ4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020956508   ⟸   XM_021100849
- UniProtKB: A0A287ATM3 (UniProtKB/TrEMBL),   A0A8D1ZRY2 (UniProtKB/TrEMBL),   A0A8D1JQJ4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020956507   ⟸   XM_021100848
- UniProtKB: A0A287ATM3 (UniProtKB/TrEMBL),   A0A8D1ZRY2 (UniProtKB/TrEMBL),   A0A8D1JQJ4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020956505   ⟸   XM_021100846
- UniProtKB: A0A287ATM3 (UniProtKB/TrEMBL),   A0A8D1ZRY2 (UniProtKB/TrEMBL),   A0A8D1JQJ4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000047223   ⟸   ENSSSCT00000048629
Protein Domains
STAS


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000035739 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00015051790 UniProtKB/TrEMBL
  ENSSSCG00025051887 UniProtKB/TrEMBL
  ENSSSCG00030058487 UniProtKB/TrEMBL
  ENSSSCG00035078607 UniProtKB/TrEMBL
  ENSSSCG00040071441 UniProtKB/TrEMBL
  ENSSSCG00045013381 UniProtKB/TrEMBL
  ENSSSCG00050003383 UniProtKB/TrEMBL
  ENSSSCG00055010340 UniProtKB/TrEMBL
  ENSSSCG00060030588 UniProtKB/TrEMBL
  ENSSSCG00065066421 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000048629 ENTREZGENE
  ENSSSCT00000048629.3 UniProtKB/TrEMBL
  ENSSSCT00015069069.1 UniProtKB/TrEMBL
  ENSSSCT00025070978.1 UniProtKB/TrEMBL
  ENSSSCT00030081640.1 UniProtKB/TrEMBL
  ENSSSCT00035107290.1 UniProtKB/TrEMBL
  ENSSSCT00040098201.1 UniProtKB/TrEMBL
  ENSSSCT00045022826.1 UniProtKB/TrEMBL
  ENSSSCT00050004504.1 UniProtKB/TrEMBL
  ENSSSCT00055020221.1 UniProtKB/TrEMBL
  ENSSSCT00060041302.1 UniProtKB/TrEMBL
  ENSSSCT00065091177.1 UniProtKB/TrEMBL
Gene3D-CATH 3.30.750.24 UniProtKB/TrEMBL
InterPro S04_transporter_CS UniProtKB/TrEMBL
  SLC26A/SulP_dom UniProtKB/TrEMBL
  SLC26A/SulP_fam UniProtKB/TrEMBL
  STAS_dom UniProtKB/TrEMBL
  STAS_dom_sf UniProtKB/TrEMBL
NCBI Gene SLC26A1 ENTREZGENE
PANTHER PTHR11814 UniProtKB/TrEMBL
  PTHR11814:SF31 UniProtKB/TrEMBL
Pfam STAS UniProtKB/TrEMBL
  Sulfate_transp UniProtKB/TrEMBL
PROSITE SLC26A UniProtKB/TrEMBL
  STAS UniProtKB/TrEMBL
Superfamily-SCOP SSF52091 UniProtKB/TrEMBL
UniProt A0A287ATM3 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1JQJ4 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1ZRY2 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:93024 ENTREZGENE