WASHC1 (WASH complex subunit 1) - Rat Genome Database

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Gene: WASHC1 (WASH complex subunit 1) Sus scrofa
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Symbol: WASHC1
Name: WASH complex subunit 1
RGD ID: 14013254
Description: ENCODES a protein that exhibits phosphatidylinositol 3-kinase inhibitor activity (ortholog); ubiquitin protein ligase binding (ortholog); INVOLVED IN Arp2/3 complex-mediated actin nucleation (ortholog); dendritic cell antigen processing and presentation (ortholog); early endosome to late endosome transport (ortholog); PARTICIPATES IN retromer-mediated pathway; ASSOCIATED WITH chromosome 9p deletion syndrome (ortholog); schizophrenia (ortholog); FOUND IN autophagosome (ortholog); BLOC-1 complex (ortholog); centrosome (ortholog)
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: WAS protein family homolog 1; WASH1
RGD Orthologs
Human
Mouse
Rat
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl567,394,875 - 67,412,431 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1567,395,737 - 67,412,408 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2569,630,618 - 69,644,438 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:14681463   PMID:17407547   PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
WASHC1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl567,394,875 - 67,412,431 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1567,395,737 - 67,412,408 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2569,630,618 - 69,644,438 (-)NCBISscrofa10.2Sscrofa10.2susScr3
WASHC1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38914,513 - 30,487 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl914,475 - 73,865 (-)EnsemblGRCh38hg38GRCh38
GRCh37914,513 - 29,739 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36Y57,764,816 - 57,767,433 (-)NCBINCBI36Build 36hg18NCBI36
Cytogenetic Map9p24.3NCBI
CHM1_1914,312 - 29,934 (-)NCBICHM1_1
T2T-CHM13v2.098,314 - 23,877 (-)NCBIT2T-CHM13v2.0
Washc1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391766,418,524 - 66,427,498 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1766,418,540 - 66,427,498 (+)EnsemblGRCm39 Ensembl
GRCm381766,111,529 - 66,120,503 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1766,111,545 - 66,120,503 (+)EnsemblGRCm38mm10GRCm38
MGSCv371766,460,886 - 66,469,843 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361766,011,089 - 66,020,046 (+)NCBIMGSCv36mm8
Celera1770,419,820 - 70,428,779 (+)NCBICelera
Cytogenetic Map17E1.1NCBI
cM Map1735.26NCBI
Washc1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr89113,169,730 - 113,179,829 (+)NCBIGRCr8
mRatBN7.29105,722,779 - 105,830,836 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl9105,722,899 - 105,733,009 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx9114,131,463 - 114,141,570 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.09119,241,477 - 119,251,568 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.09117,597,316 - 117,607,423 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.09113,918,914 - 113,936,861 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl9113,918,858 - 113,936,860 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.09113,443,351 - 113,459,272 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.49104,885,755 - 104,896,516 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.19105,095,204 - 105,105,650 (+)NCBI
Celera9103,300,490 - 103,302,995 (-)NCBICelera
Cytogenetic Map9q37NCBI
WASHC1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12742,102,694 - 42,118,850 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2742,099,886 - 42,116,339 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha274,564,689 - 4,581,124 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02742,461,263 - 42,477,702 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2742,461,240 - 42,477,688 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12742,402,542 - 42,419,383 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02742,372,199 - 42,388,638 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0273,924,862 - 3,941,306 (+)NCBIUU_Cfam_GSD_1.0
Washc1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404945108,955,066 - 108,974,812 (+)NCBIHiC_Itri_2
SpeTri2.0NW_004936606209,289 - 228,986 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
WASHC1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11110,075 - 27,633 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl118,116 - 22,842 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660638,319,471 - 8,337,957 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Washc1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_004624828249,994 - 269,347 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in WASHC1
626 total Variants

Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
endoderm
hemolymphoid system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
10 4 23 3 2 5 14 12 23 3 6 3

Sequence


Ensembl Acc Id: ENSSSCT00000000810   ⟹   ENSSSCP00000000794
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl567,394,875 - 67,412,431 (-)Ensembl
Ensembl Acc Id: ENSSSCT00000039963   ⟹   ENSSSCP00000058840
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl567,395,739 - 67,412,404 (-)Ensembl
Ensembl Acc Id: ENSSSCT00000087395   ⟹   ENSSSCP00000067548
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl567,394,875 - 67,409,494 (-)Ensembl
RefSeq Acc Id: NM_001244483   ⟹   NP_001231412
RefSeq Status: VALIDATED
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1567,395,737 - 67,412,408 (-)NCBI
Sequence:
RefSeq Acc Id: NP_001231412   ⟸   NM_001244483
- UniProtKB: A0A480TN39 (UniProtKB/TrEMBL),   A0A4X1ULF6 (UniProtKB/TrEMBL),   A0A8D0WAH5 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSSSCP00000058840   ⟸   ENSSSCT00000039963
Ensembl Acc Id: ENSSSCP00000000794   ⟸   ENSSSCT00000000810
Ensembl Acc Id: ENSSSCP00000067548   ⟸   ENSSSCT00000087395
Protein Domains
WH2


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000000746 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00025005851 UniProtKB/TrEMBL
  ENSSSCG00030028250 UniProtKB/TrEMBL
  ENSSSCG00035018024 UniProtKB/TrEMBL
  ENSSSCG00040072191 UniProtKB/TrEMBL
  ENSSSCG00045007345 UniProtKB/TrEMBL
  ENSSSCG00050016279 UniProtKB/TrEMBL
  ENSSSCG00055015772 UniProtKB/TrEMBL
  ENSSSCG00060072875 UniProtKB/TrEMBL
  ENSSSCG00065030158 UniProtKB/TrEMBL
  ENSSSCG00070017691 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000000810.5 UniProtKB/TrEMBL
  ENSSSCT00000039963 ENTREZGENE
  ENSSSCT00000039963.3 UniProtKB/TrEMBL
  ENSSSCT00000087395.2 UniProtKB/TrEMBL
  ENSSSCT00025007821.1 UniProtKB/TrEMBL
  ENSSSCT00030039495.1 UniProtKB/TrEMBL
  ENSSSCT00035023230.1 UniProtKB/TrEMBL
  ENSSSCT00040099438.1 UniProtKB/TrEMBL
  ENSSSCT00045012230.1 UniProtKB/TrEMBL
  ENSSSCT00050022170.1 UniProtKB/TrEMBL
  ENSSSCT00055031092.1 UniProtKB/TrEMBL
  ENSSSCT00060099696.1 UniProtKB/TrEMBL
  ENSSSCT00065040697.1 UniProtKB/TrEMBL
  ENSSSCT00070034990.1 UniProtKB/TrEMBL
  ENSSSCT00070035016.1 UniProtKB/TrEMBL
  ENSSSCT00070035029.1 UniProtKB/TrEMBL
  ENSSSCT00070035042.1 UniProtKB/TrEMBL
  ENSSSCT00070035045.1 UniProtKB/TrEMBL
InterPro WASH1 UniProtKB/TrEMBL
  WASH1_WAHD UniProtKB/TrEMBL
  WH2_dom UniProtKB/TrEMBL
KEGG Report ssc:100512536 UniProtKB/TrEMBL
NCBI Gene WASHC1 ENTREZGENE
PANTHER PTHR23331 UniProtKB/TrEMBL
  WAS PROTEIN FAMILY HOMOLOG 2-RELATED UniProtKB/TrEMBL
Pfam WASH_WAHD UniProtKB/TrEMBL
PROSITE WH2 UniProtKB/TrEMBL
UniProt A0A287BQQ1_PIG UniProtKB/TrEMBL
  A0A480TN39 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1UH21_PIG UniProtKB/TrEMBL
  A0A4X1UH30_PIG UniProtKB/TrEMBL
  A0A4X1ULF6 ENTREZGENE, UniProtKB/TrEMBL
  A0A5G2RAA9_PIG UniProtKB/TrEMBL
  A0A8D0WAH5 ENTREZGENE, UniProtKB/TrEMBL
  F1SK83_PIG UniProtKB/TrEMBL