WASHC1 (WASH complex subunit 1) - Rat Genome Database
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Gene: WASHC1 (WASH complex subunit 1) Sus scrofa
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Symbol: WASHC1
Name: WASH complex subunit 1
RGD ID: 14013254
Description: ENCODES a protein that exhibits gamma-tubulin binding (ortholog); ubiquitin protein ligase binding (ortholog); INVOLVED IN Arp2/3 complex-mediated actin nucleation (ortholog); dendritic cell antigen processing and presentation (ortholog); endocytic recycling (ortholog); PARTICIPATES IN retromer-mediated pathway; ASSOCIATED WITH chromosome 9p deletion syndrome (ortholog); schizophrenia (ortholog); FOUND IN autophagosome (ortholog); BLOC-1 complex (ortholog); centrosome (ortholog)
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: WAS protein family homolog 1; WASH1
RGD Orthologs
Human
Mouse
Rat
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl567,391,277 - 67,412,434 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1567,395,737 - 67,412,408 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2569,630,618 - 69,644,438 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:14681463   PMID:17407547  


Genomics

Comparative Map Data
WASHC1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl567,391,277 - 67,412,434 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1567,395,737 - 67,412,408 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2569,630,618 - 69,644,438 (-)NCBISscrofa10.2Sscrofa10.2susScr3
WASHC1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl914,475 - 73,865 (-)EnsemblGRCh38hg38GRCh38
GRCh38914,475 - 30,487 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh37914,513 - 29,739 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36Y57,764,816 - 57,767,433 (-)NCBINCBI36hg18NCBI36
Cytogenetic Map9p24.3NCBI
CHM1_1914,312 - 29,934 (-)NCBICHM1_1
Washc1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391766,418,524 - 66,427,498 (+)NCBIGRCm39mm39
GRCm39 Ensembl1766,418,540 - 66,427,498 (+)Ensembl
GRCm381766,111,529 - 66,120,503 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1766,111,545 - 66,120,503 (+)EnsemblGRCm38mm10GRCm38
MGSCv371766,460,886 - 66,469,843 (+)NCBIGRCm37mm9NCBIm37
MGSCv361766,011,089 - 66,020,046 (+)NCBImm8
Celera1770,419,820 - 70,428,779 (+)NCBICelera
Cytogenetic Map17E1.1NCBI
Washc1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.29105,722,779 - 105,830,836 (+)NCBI
Rnor_6.0 Ensembl9113,918,858 - 113,936,860 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.09113,918,914 - 113,936,861 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.09113,443,351 - 113,459,272 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.49104,885,755 - 104,896,516 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.19105,095,204 - 105,105,650 (+)NCBI
Celera9103,300,490 - 103,302,995 (-)NCBICelera
Cytogenetic Map9q37NCBI
WASHC1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12742,102,694 - 42,118,850 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2742,099,886 - 42,116,339 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha274,564,689 - 4,581,124 (+)NCBI
ROS_Cfam_1.02742,461,263 - 42,477,702 (-)NCBI
UMICH_Zoey_3.12742,402,542 - 42,419,383 (-)NCBI
UNSW_CanFamBas_1.02742,372,199 - 42,388,638 (-)NCBI
UU_Cfam_GSD_1.0273,924,862 - 3,941,306 (+)NCBI
Washc1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_ltri_2NW_024404945108,955,066 - 108,974,812 (+)NCBI
SpeTri2.0NW_004936606209,289 - 228,986 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
WASHC1
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11110,075 - 27,633 (-)NCBI
ChlSab1.1 Ensembl118,116 - 22,842 (-)Ensembl
Washc1
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_004624828249,994 - 269,347 (+)NCBI


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 1 1
Low 10 4 3 4 2 22 2 3 3
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSSSCT00000000810   ⟹   ENSSSCP00000000794
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl567,391,277 - 67,412,434 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000039963   ⟹   ENSSSCP00000058840
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl567,395,739 - 67,412,405 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000087395   ⟹   ENSSSCP00000067548
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl567,391,277 - 67,409,494 (-)Ensembl
RefSeq Acc Id: NM_001244483   ⟹   NP_001231412
RefSeq Status: VALIDATED
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1567,395,737 - 67,412,408 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001231412 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: NP_001231412   ⟸   NM_001244483
- Sequence:
RefSeq Acc Id: ENSSSCP00000058840   ⟸   ENSSSCT00000039963
RefSeq Acc Id: ENSSSCP00000000794   ⟸   ENSSSCT00000000810
RefSeq Acc Id: ENSSSCP00000067548   ⟸   ENSSSCT00000087395
Protein Domains
WH2


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000000746 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00070017691 UniProtKB/TrEMBL
Ensembl Protein ENSSSCP00000000794 UniProtKB/TrEMBL
  ENSSSCP00000058840 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCP00000067548 UniProtKB/TrEMBL
  ENSSSCP00070029235 UniProtKB/TrEMBL
  ENSSSCP00070029253 UniProtKB/TrEMBL
  ENSSSCP00070029264 UniProtKB/TrEMBL
  ENSSSCP00070029276 UniProtKB/TrEMBL
  ENSSSCP00070029279 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000000810 UniProtKB/TrEMBL
  ENSSSCT00000039963 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCT00000087395 UniProtKB/TrEMBL
  ENSSSCT00070034990 UniProtKB/TrEMBL
  ENSSSCT00070035016 UniProtKB/TrEMBL
  ENSSSCT00070035029 UniProtKB/TrEMBL
  ENSSSCT00070035042 UniProtKB/TrEMBL
  ENSSSCT00070035045 UniProtKB/TrEMBL
InterPro WASH1 UniProtKB/TrEMBL
  WASH1_WAHD UniProtKB/TrEMBL
  WH2_dom UniProtKB/TrEMBL
KEGG Report ssc:100512536 UniProtKB/TrEMBL
NCBI Gene WASHC1 ENTREZGENE
PANTHER PTHR23331 UniProtKB/TrEMBL
Pfam WASH_WAHD UniProtKB/TrEMBL
PROSITE WH2 UniProtKB/TrEMBL
UniProt A0A287BQQ1_PIG UniProtKB/TrEMBL
  A0A480TN39_PIG UniProtKB/TrEMBL
  A0A4X1UH21_PIG UniProtKB/TrEMBL
  A0A4X1UH30_PIG UniProtKB/TrEMBL
  A0A4X1ULF6_PIG UniProtKB/TrEMBL
  A0A5G2RAA9_PIG UniProtKB/TrEMBL
  F1SK83_PIG UniProtKB/TrEMBL