DNAI1 (dynein axonemal intermediate chain 1) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: DNAI1 (dynein axonemal intermediate chain 1) Sus scrofa
Analyze
Symbol: DNAI1
Name: dynein axonemal intermediate chain 1
RGD ID: 14013108
Description: INVOLVED IN cilium movement (ortholog); determination of left/right symmetry (ortholog); epithelial cilium movement involved in extracellular fluid movement (ortholog); ASSOCIATED WITH acromesomelic dysplasia, Maroteaux type (ortholog); anauxetic dysplasia (ortholog); autism spectrum disorder (ortholog); FOUND IN 9+2 motile cilium (inferred); cell projection (inferred); centrosome (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: dynein intermediate chain 1, axonemal
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1032,275,175 - 32,355,399 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11032,275,173 - 32,355,444 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21036,414,541 - 36,430,131 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
DNAI1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1032,275,175 - 32,355,399 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11032,275,173 - 32,355,444 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21036,414,541 - 36,430,131 (-)NCBISscrofa10.2Sscrofa10.2susScr3
DNAI1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38934,458,805 - 34,520,984 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl934,457,414 - 34,520,988 (+)EnsemblGRCh38hg38GRCh38
GRCh37934,458,803 - 34,520,982 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36934,448,811 - 34,510,982 (+)NCBINCBI36Build 36hg18NCBI36
Build 34934,448,810 - 34,510,981NCBI
Celera934,390,311 - 34,452,482 (+)NCBICelera
Cytogenetic Map9p13.3NCBI
HuRef934,413,082 - 34,475,335 (+)NCBIHuRef
CHM1_1934,458,532 - 34,520,778 (+)NCBICHM1_1
T2T-CHM13v2.0934,477,326 - 34,539,522 (+)NCBIT2T-CHM13v2.0
Dnai1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39441,569,731 - 41,638,158 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl441,569,775 - 41,638,158 (+)EnsemblGRCm39 Ensembl
GRCm38441,569,647 - 41,638,158 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl441,569,775 - 41,638,158 (+)EnsemblGRCm38mm10GRCm38
MGSCv37441,516,827 - 41,585,191 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36441,758,465 - 41,826,821 (+)NCBIMGSCv36mm8
Celera441,231,484 - 41,300,976 (+)NCBICelera
Cytogenetic Map4A5NCBI
cM Map421.75NCBI
Dnai1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8561,526,079 - 61,596,806 (+)NCBIGRCr8
mRatBN7.2556,730,179 - 56,800,926 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl556,730,179 - 56,800,925 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx558,712,718 - 58,782,367 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0560,531,521 - 60,601,189 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0560,512,217 - 60,587,674 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0557,947,796 - 58,017,985 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl557,947,716 - 58,017,992 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0562,474,510 - 62,544,535 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4558,988,981 - 59,060,130 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera555,325,994 - 55,398,000 (+)NCBICelera
Cytogenetic Map5q22NCBI
Dnai1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554721,599,493 - 1,668,024 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554721,599,265 - 1,668,214 (-)NCBIChiLan1.0ChiLan1.0
DNAI1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21190,083,046 - 90,145,795 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1990,088,986 - 90,151,735 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0934,295,010 - 34,357,331 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1935,104,297 - 35,167,454 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl935,104,297 - 35,167,454 (+)Ensemblpanpan1.1panPan2
DNAI1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11151,080,080 - 51,205,381 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1151,106,370 - 51,237,467 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1149,709,714 - 49,834,590 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01152,022,142 - 52,146,931 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1152,086,129 - 52,212,664 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11150,684,829 - 50,809,688 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01150,552,931 - 50,677,839 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01151,317,729 - 51,442,601 (+)NCBIUU_Cfam_GSD_1.0
Dnai1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947165,961,982 - 166,078,975 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365242,572,956 - 2,614,026 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365242,551,431 - 2,614,245 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
DNAI1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11246,058,280 - 46,155,989 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1246,090,829 - 46,128,839 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603843,207,678 - 43,272,504 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Dnai1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473638,859,050 - 38,922,097 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473638,858,918 - 38,922,092 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in DNAI1
2155 total Variants

Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
hemolymphoid system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
4 1 18 3 1 6 5 18 1 5

Sequence


Ensembl Acc Id: ENSSSCT00000038207   ⟹   ENSSSCP00000033554
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1032,275,175 - 32,355,399 (-)Ensembl
RefSeq Acc Id: XM_021064678   ⟹   XP_020920337
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11032,275,173 - 32,355,444 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_020920337 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSSCP00000033554
  ENSSSCP00000033554.2
  ENSSSCP00040017560.1
  ENSSSCP00060033798.1
  ENSSSCP00070032117.1
RefSeq Acc Id: XP_020920337   ⟸   XM_021064678
- UniProtKB: A0A480J722 (UniProtKB/TrEMBL),   A0A286ZPL5 (UniProtKB/TrEMBL),   A0A4X1UUX7 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSSSCP00000033554   ⟸   ENSSSCT00000038207


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000039342 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00040031187 UniProtKB/TrEMBL
  ENSSSCG00060057447 UniProtKB/TrEMBL
  ENSSSCG00070019377 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000038207 ENTREZGENE
  ENSSSCT00000038207.2 UniProtKB/TrEMBL
  ENSSSCT00040041930.1 UniProtKB/TrEMBL
  ENSSSCT00060078257.1 UniProtKB/TrEMBL
  ENSSSCT00070038370.1 UniProtKB/TrEMBL
Gene3D-CATH 2.130.10.10 UniProtKB/TrEMBL
InterPro Dynein_IC UniProtKB/TrEMBL
  WD40/YVTN_repeat-like_dom_sf UniProtKB/TrEMBL
  WD40_repeat UniProtKB/TrEMBL
  WD40_repeat_dom_sf UniProtKB/TrEMBL
NCBI Gene DNAI1 ENTREZGENE
PANTHER DYNEIN AXONEMAL INTERMEDIATE CHAIN 1 UniProtKB/TrEMBL
  DYNEIN INTERMEDIATE CHAIN UniProtKB/TrEMBL
Pfam WD40 UniProtKB/TrEMBL
PROSITE WD_REPEATS_2 UniProtKB/TrEMBL
  WD_REPEATS_REGION UniProtKB/TrEMBL
SMART WD40 UniProtKB/TrEMBL
Superfamily-SCOP SSF50978 UniProtKB/TrEMBL
UniProt A0A286ZPL5 ENTREZGENE, UniProtKB/TrEMBL
  A0A480J722 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1UUX7 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:108269 ENTREZGENE