SLC2A12 (solute carrier family 2 member 12) - Rat Genome Database

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Gene: SLC2A12 (solute carrier family 2 member 12) Sus scrofa
Analyze
Symbol: SLC2A12
Name: solute carrier family 2 member 12
RGD ID: 14011828
Description: ENCODES a protein that exhibits glucose transmembrane transporter activity (inferred); symporter activity (inferred); transmembrane transporter activity (inferred); INVOLVED IN glucose transmembrane transport (ortholog); ASSOCIATED WITH genetic disease (ortholog); FOUND IN endomembrane system (inferred); membrane (inferred); perinuclear region of cytoplasm (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: solute carrier family 2, facilitated glucose transporter member 12
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl129,836,056 - 29,901,995 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1129,835,964 - 29,901,996 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2133,338,095 - 33,403,023 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
SLC2A12
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl129,836,056 - 29,901,995 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1129,835,964 - 29,901,996 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2133,338,095 - 33,403,023 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SLC2A12
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh386133,987,581 - 134,052,624 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl6133,987,581 - 134,052,624 (-)EnsemblGRCh38hg38GRCh38
GRCh376134,308,719 - 134,373,762 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 366134,350,412 - 134,415,482 (-)NCBINCBI36Build 36hg18NCBI36
Build 346134,353,323 - 134,415,444NCBI
Celera6135,049,799 - 135,114,783 (-)NCBICelera
Cytogenetic Map6q23.2NCBI
HuRef6131,877,652 - 131,942,705 (-)NCBIHuRef
CHM1_16134,570,960 - 134,635,958 (-)NCBICHM1_1
T2T-CHM13v2.06135,175,590 - 135,240,550 (-)NCBIT2T-CHM13v2.0
Slc2a12
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391022,488,821 - 22,579,779 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1022,520,910 - 22,580,184 (+)EnsemblGRCm39 Ensembl
GRCm381022,644,990 - 22,703,880 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1022,645,011 - 22,704,285 (+)EnsemblGRCm38mm10GRCm38
MGSCv371022,364,817 - 22,423,686 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361022,334,547 - 22,393,701 (+)NCBIMGSCv36mm8
Celera1023,592,104 - 23,650,608 (+)NCBICelera
Cytogenetic Map10A3NCBI
cM Map1010.21NCBI
Slc2a12
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8124,623,558 - 24,683,577 (-)NCBIGRCr8
mRatBN7.2122,803,068 - 22,862,204 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl122,804,418 - 22,860,971 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx122,583,367 - 22,637,021 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0128,583,147 - 28,636,808 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0122,780,414 - 22,834,081 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0124,003,625 - 24,056,373 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl124,003,625 - 24,056,373 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0125,467,855 - 25,520,421 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4123,321,411 - 23,376,407 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1123,326,423 - 23,379,489 (-)NCBI
Celera121,531,904 - 21,584,938 (-)NCBICelera
Cytogenetic Map1p12NCBI
Slc2a12
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554392,484,200 - 2,539,510 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554392,482,440 - 2,539,510 (+)NCBIChiLan1.0ChiLan1.0
SLC2A12
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v25153,961,292 - 154,026,300 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan16151,867,798 - 151,932,782 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v06131,754,601 - 131,820,042 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.16135,855,081 - 135,918,771 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl6135,853,958 - 135,919,548 (-)Ensemblpanpan1.1panPan2
SLC2A12
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1126,910,535 - 26,993,858 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl126,911,334 - 26,994,576 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha127,791,462 - 27,875,173 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0127,068,574 - 27,152,390 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl127,069,863 - 27,152,307 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1126,952,239 - 27,035,856 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0126,832,322 - 26,916,031 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0127,141,785 - 27,225,706 (-)NCBIUU_Cfam_GSD_1.0
Slc2a12
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404946122,052,271 - 122,105,249 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365601,828,991 - 1,884,532 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365601,833,309 - 1,884,455 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLC2A12
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11339,420,767 - 39,486,544 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1339,421,621 - 39,484,094 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604011,606,306 - 11,672,894 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Slc2a12
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624942766,578 - 833,181 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624942766,644 - 831,157 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in SLC2A12
2652 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 2
Low 7 4 3 5 2 22 2 3 1
Below cutoff 3 1

Sequence


Reference Sequences
RefSeq Acc Id: ENSSSCT00000004611   ⟹   ENSSSCP00000004506
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl129,836,056 - 29,901,995 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000050000   ⟹   ENSSSCP00000058558
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl129,842,413 - 29,901,995 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000053756   ⟹   ENSSSCP00000056093
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl129,836,056 - 29,901,995 (+)Ensembl
RefSeq Acc Id: XM_003121191   ⟹   XP_003121239
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1129,836,001 - 29,901,996 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005652670   ⟹   XP_005652727
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1129,835,964 - 29,895,272 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021087644   ⟹   XP_020943303
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1129,841,801 - 29,901,777 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021087654   ⟹   XP_020943313
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1129,841,793 - 29,895,272 (+)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: XP_005652727   ⟸   XM_005652670
- Peptide Label: isoform X3
- UniProtKB: A0A480R5U9 (UniProtKB/TrEMBL),   A0A8D1L1W6 (UniProtKB/TrEMBL),   A0A8D0PL75 (UniProtKB/TrEMBL),   A0A8D0M0A8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_003121239   ⟸   XM_003121191
- Peptide Label: isoform X1
- UniProtKB: A0A287BJ50 (UniProtKB/TrEMBL),   A0A4X1VBK9 (UniProtKB/TrEMBL),   A0A0B8RZ57 (UniProtKB/TrEMBL),   A0A8D0PF48 (UniProtKB/TrEMBL),   A0A8D1UQP9 (UniProtKB/TrEMBL),   A0A8D0LZX9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020943313   ⟸   XM_021087654
- Peptide Label: isoform X4
- UniProtKB: A0A8D0PL75 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020943303   ⟸   XM_021087644
- Peptide Label: isoform X2
- UniProtKB: A0A287BR15 (UniProtKB/TrEMBL),   A0A8D0QYS2 (UniProtKB/TrEMBL),   A0A8D0PLA6 (UniProtKB/TrEMBL),   A0A8D1UQK6 (UniProtKB/TrEMBL),   A0A8D1R5I5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000058558   ⟸   ENSSSCT00000050000
RefSeq Acc Id: ENSSSCP00000004506   ⟸   ENSSSCT00000004611
RefSeq Acc Id: ENSSSCP00000056093   ⟸   ENSSSCT00000053756
Protein Domains
Major facilitator superfamily (MFS) profile


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000004172 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00005042930 UniProtKB/TrEMBL
  ENSSSCG00015060168 UniProtKB/TrEMBL
  ENSSSCG00025008899 UniProtKB/TrEMBL
  ENSSSCG00035039173 UniProtKB/TrEMBL
  ENSSSCG00040042743 UniProtKB/TrEMBL
  ENSSSCG00045025233 UniProtKB/TrEMBL
  ENSSSCG00050070721 UniProtKB/TrEMBL
  ENSSSCG00055018422 UniProtKB/TrEMBL
  ENSSSCG00060022135 UniProtKB/TrEMBL
  ENSSSCG00065037341 UniProtKB/TrEMBL
  ENSSSCG00070023218 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000053756 ENTREZGENE
  ENSSSCT00000053756.2 UniProtKB/TrEMBL
  ENSSSCT00005068891.1 UniProtKB/TrEMBL
  ENSSSCT00005068907.1 UniProtKB/TrEMBL
  ENSSSCT00005068924.1 UniProtKB/TrEMBL
  ENSSSCT00015080342.1 UniProtKB/TrEMBL
  ENSSSCT00015080414.1 UniProtKB/TrEMBL
  ENSSSCT00015080509.1 UniProtKB/TrEMBL
  ENSSSCT00025011812.1 UniProtKB/TrEMBL
  ENSSSCT00025011821.1 UniProtKB/TrEMBL
  ENSSSCT00035052030.1 UniProtKB/TrEMBL
  ENSSSCT00035052033.1 UniProtKB/TrEMBL
  ENSSSCT00035052038.1 UniProtKB/TrEMBL
  ENSSSCT00040057164.1 UniProtKB/TrEMBL
  ENSSSCT00040057222.1 UniProtKB/TrEMBL
  ENSSSCT00045043039.1 UniProtKB/TrEMBL
  ENSSSCT00045043127.1 UniProtKB/TrEMBL
  ENSSSCT00045043206.1 UniProtKB/TrEMBL
  ENSSSCT00045043282.1 UniProtKB/TrEMBL
  ENSSSCT00050096445.1 UniProtKB/TrEMBL
  ENSSSCT00050096457.1 UniProtKB/TrEMBL
  ENSSSCT00055036025.1 UniProtKB/TrEMBL
  ENSSSCT00055036104.1 UniProtKB/TrEMBL
  ENSSSCT00060030047.1 UniProtKB/TrEMBL
  ENSSSCT00060030053.1 UniProtKB/TrEMBL
  ENSSSCT00065050956.1 UniProtKB/TrEMBL
  ENSSSCT00065050958.1 UniProtKB/TrEMBL
  ENSSSCT00070046289.1 UniProtKB/TrEMBL
  ENSSSCT00070046291.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.1250.20 UniProtKB/TrEMBL
InterPro MFS_dom UniProtKB/TrEMBL
  MFS_sugar_transport-like UniProtKB/TrEMBL
  MFS_trans_sf UniProtKB/TrEMBL
  Sugar/inositol_transpt UniProtKB/TrEMBL
  Sugar_transporter_CS UniProtKB/TrEMBL
KEGG Report ssc:100517381 UniProtKB/TrEMBL
NCBI Gene SLC2A12 ENTREZGENE
PANTHER D-XYLOSE-PROTON SYMPORTER-LIKE 2 UniProtKB/TrEMBL
  SOLUTE CARRIER FAMILY 2, FACILITATED GLUCOSE TRANSPORTER MEMBER 12 UniProtKB/TrEMBL
Pfam Sugar_tr UniProtKB/TrEMBL
PRINTS SUGRTRNSPORT UniProtKB/TrEMBL
PROSITE MFS UniProtKB/TrEMBL
  SUGAR_TRANSPORT_1 UniProtKB/TrEMBL
Superfamily-SCOP SSF103473 UniProtKB/TrEMBL
UniProt A0A0B8RZ57 ENTREZGENE
  A0A287BJ50 ENTREZGENE, UniProtKB/TrEMBL
  A0A287BR15 ENTREZGENE
  A0A480R5U9 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1VBK9 ENTREZGENE
  A0A4X1VBL4_PIG UniProtKB/TrEMBL
  A0A8D0LZX9 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0M0A8 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0PF48 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0PL75 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0PLA6 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0QYS2 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1L1W6 ENTREZGENE
  A0A8D1R5I5 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1UQK6 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1UQP9 ENTREZGENE, UniProtKB/TrEMBL
  Q15I71_PIG UniProtKB/TrEMBL
UniProt Secondary A0A287BR15 UniProtKB/TrEMBL
  A0A4X1VBK9 UniProtKB/TrEMBL
  A0A8D1L1W6 UniProtKB/TrEMBL
VGNC ID VGNC:93046 ENTREZGENE