BAG6 (BAG cochaperone 6) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: BAG6 (BAG cochaperone 6) Sus scrofa
Analyze
Symbol: BAG6
Name: BAG cochaperone 6
RGD ID: 14011110
Description: ENCODES a protein that exhibits identical protein binding (ortholog); polyubiquitin modification-dependent protein binding (ortholog); proteasome binding (ortholog); INVOLVED IN apoptotic process (ortholog); brain development (ortholog); endoplasmic reticulum stress-induced pre-emptive quality control (ortholog); ASSOCIATED WITH gastrointestinal stromal tumor (ortholog); lung non-small cell carcinoma (ortholog); osteoarthritis (ortholog); FOUND IN BAT3 complex (ortholog); cytoplasm (ortholog); cytosol (ortholog)
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: BAT3; BCL2 associated athanogene 6; HLA-B-associated transcript 3; large proline-rich protein BAG6; Large proline-rich protein BAT3
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl723,756,897 - 23,775,893 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1723,756,897 - 23,768,659 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2727,483,304 - 27,495,077 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

References
Additional References at PubMed
PMID:14681463   PMID:17145712   PMID:17625002   PMID:24901321  


Genomics

Comparative Map Data
BAG6
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl723,756,897 - 23,775,893 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1723,756,897 - 23,768,659 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2727,483,304 - 27,495,077 (+)NCBISscrofa10.2Sscrofa10.2susScr3
BAG6
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl631,639,028 - 31,652,705 (-)EnsemblGRCh38hg38GRCh38
GRCh38631,639,028 - 31,660,900 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh37631,606,805 - 31,620,438 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36631,714,784 - 31,728,456 (-)NCBINCBI36hg18NCBI36
Build 34631,714,796 - 31,728,426NCBI
Celera633,205,026 - 33,218,698 (-)NCBI
Cytogenetic Map6p21.33NCBI
HuRef631,392,973 - 31,406,702 (-)NCBIHuRef
CHM1_1631,608,941 - 31,622,613 (-)NCBICHM1_1
Bag6
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391735,354,132 - 35,366,297 (+)NCBIGRCm39mm39
GRCm39 Ensembl1735,354,154 - 35,366,298 (+)Ensembl
GRCm381735,135,156 - 35,147,321 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1735,135,178 - 35,147,322 (+)EnsemblGRCm38mm10GRCm38
MGSCv371735,272,187 - 35,284,181 (+)NCBIGRCm37mm9NCBIm37
MGSCv361734,743,298 - 34,755,292 (+)NCBImm8
Celera1738,232,179 - 38,244,173 (+)NCBICelera
Cytogenetic Map17B1NCBI
cM Map1718.59NCBI
Bag6
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2203,675,938 - 3,690,414 (-)NCBI
Rnor_6.0 Ensembl205,125,349 - 5,138,084 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0205,124,512 - 5,138,084 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0207,198,613 - 7,211,343 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4203,739,593 - 3,752,311 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1203,739,819 - 3,752,493 (-)NCBI
Celera204,336,986 - 4,349,704 (+)NCBICelera
Cytogenetic Map20p12NCBI
Bag6
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955437176,797 - 188,003 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955437176,848 - 188,243 (-)NCBIChiLan1.0ChiLan1.0
BAG6
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1632,190,037 - 32,204,321 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl632,190,037 - 32,204,321 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0631,300,126 - 31,313,829 (-)NCBIMhudiblu_PPA_v0panPan3
BAG6
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1121,126,730 - 1,141,978 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl121,126,732 - 1,137,896 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha121,263,174 - 1,278,145 (-)NCBI
ROS_Cfam_1.0121,271,966 - 1,286,938 (-)NCBI
UMICH_Zoey_3.1121,131,332 - 1,146,287 (-)NCBI
UNSW_CanFamBas_1.0121,198,583 - 1,213,550 (-)NCBI
UU_Cfam_GSD_1.0121,265,643 - 1,280,617 (-)NCBI
Bag6
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494635,676,078 - 35,695,078 (-)NCBI
SpeTri2.0NW_0049367271,866,235 - 1,885,266 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
BAG6
(Chlorocebus sabaeus - African green monkey)
No map positions available.
Bag6
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462475424,559,483 - 24,571,073 (+)NCBI


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 6 3 3 5 2 20 2 3 3
Low 4 1 3
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSSSCT00000001542   ⟹   ENSSSCP00000001500
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl723,756,897 - 23,768,623 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000034083   ⟹   ENSSSCP00000030229
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl723,756,897 - 23,768,655 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000034386   ⟹   ENSSSCP00000029889
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl723,756,897 - 23,768,635 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000067221   ⟹   ENSSSCP00000060981
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl723,756,897 - 23,768,635 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000069519   ⟹   ENSSSCP00000070517
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl723,764,747 - 23,775,893 (-)Ensembl
RefSeq Acc Id: NM_001145382   ⟹   NP_001138854
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1723,756,897 - 23,768,659 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001138854 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein A5D9M6 (Get FASTA)   NCBI Sequence Viewer  
  ABX82810 (Get FASTA)   NCBI Sequence Viewer  
  AID16307 (Get FASTA)   NCBI Sequence Viewer  
  CAN59676 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: NP_001138854   ⟸   NM_001145382
- UniProtKB: A5D9M6 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSSSCP00000001500   ⟸   ENSSSCT00000001542
RefSeq Acc Id: ENSSSCP00000030229   ⟸   ENSSSCT00000034083
RefSeq Acc Id: ENSSSCP00000029889   ⟸   ENSSSCT00000034386
RefSeq Acc Id: ENSSSCP00000070517   ⟸   ENSSSCT00000069519
RefSeq Acc Id: ENSSSCP00000060981   ⟸   ENSSSCT00000067221
Protein Domains
Ubiquitin-like


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000001410 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00005033087 UniProtKB/Swiss-Prot
  ENSSSCG00025077573 UniProtKB/Swiss-Prot
  ENSSSCG00030062793 UniProtKB/Swiss-Prot
  ENSSSCG00040061565 UniProtKB/Swiss-Prot
  ENSSSCG00045032435 UniProtKB/Swiss-Prot
  ENSSSCG00050006825 UniProtKB/Swiss-Prot
  ENSSSCG00055025612 UniProtKB/Swiss-Prot
  ENSSSCG00065036083 UniProtKB/Swiss-Prot
  ENSSSCG00070023948 UniProtKB/TrEMBL
Ensembl Protein ENSSSCP00000001500 UniProtKB/TrEMBL
  ENSSSCP00000029889 UniProtKB/TrEMBL
  ENSSSCP00000030229 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCP00000060981 UniProtKB/TrEMBL
  ENSSSCP00000070517 UniProtKB/TrEMBL
  ENSSSCP00005034429 UniProtKB/Swiss-Prot
  ENSSSCP00025048949 UniProtKB/Swiss-Prot
  ENSSSCP00025048953 UniProtKB/Swiss-Prot
  ENSSSCP00030041572 UniProtKB/Swiss-Prot
  ENSSSCP00030041615 UniProtKB/Swiss-Prot
  ENSSSCP00040040602 UniProtKB/Swiss-Prot
  ENSSSCP00040041083 UniProtKB/Swiss-Prot
  ENSSSCP00045044891 UniProtKB/Swiss-Prot
  ENSSSCP00045045125 UniProtKB/Swiss-Prot
  ENSSSCP00050004452 UniProtKB/Swiss-Prot
  ENSSSCP00050004473 UniProtKB/Swiss-Prot
  ENSSSCP00055043953 UniProtKB/Swiss-Prot
  ENSSSCP00055044239 UniProtKB/Swiss-Prot
  ENSSSCP00065021657 UniProtKB/Swiss-Prot
  ENSSSCP00065021668 UniProtKB/Swiss-Prot
  ENSSSCP00070040497 UniProtKB/TrEMBL
  ENSSSCP00070040503 UniProtKB/TrEMBL
  ENSSSCP00070040511 UniProtKB/TrEMBL
  ENSSSCP00070040515 UniProtKB/TrEMBL
  ENSSSCP00070040519 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000001542 UniProtKB/TrEMBL
  ENSSSCT00000034083 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCT00000034386 UniProtKB/TrEMBL
  ENSSSCT00000067221 UniProtKB/TrEMBL
  ENSSSCT00000069519 UniProtKB/TrEMBL
  ENSSSCT00005055896 UniProtKB/Swiss-Prot
  ENSSSCT00025108140 UniProtKB/Swiss-Prot
  ENSSSCT00025108155 UniProtKB/Swiss-Prot
  ENSSSCT00030090218 UniProtKB/Swiss-Prot
  ENSSSCT00030090318 UniProtKB/Swiss-Prot
  ENSSSCT00040092025 UniProtKB/Swiss-Prot
  ENSSSCT00040092992 UniProtKB/Swiss-Prot
  ENSSSCT00045063617 UniProtKB/Swiss-Prot
  ENSSSCT00045063926 UniProtKB/Swiss-Prot
  ENSSSCT00050010383 UniProtKB/Swiss-Prot
  ENSSSCT00050010432 UniProtKB/Swiss-Prot
  ENSSSCT00055055086 UniProtKB/Swiss-Prot
  ENSSSCT00055055423 UniProtKB/Swiss-Prot
  ENSSSCT00065050051 UniProtKB/Swiss-Prot
  ENSSSCT00065050074 UniProtKB/Swiss-Prot
  ENSSSCT00070047980 UniProtKB/TrEMBL
  ENSSSCT00070047986 UniProtKB/TrEMBL
  ENSSSCT00070047994 UniProtKB/TrEMBL
  ENSSSCT00070047998 UniProtKB/TrEMBL
  ENSSSCT00070048002 UniProtKB/TrEMBL
InterPro BAG6 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  DUF4661 UniProtKB/TrEMBL
  Ubiquitin-like_dom UniProtKB/TrEMBL
  Ubiquitin-like_domsf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ubiquitin_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ubiquitin_dom UniProtKB/Swiss-Prot
KEGG Report ssc:100153950 UniProtKB/Swiss-Prot
NCBI Gene BAG6 ENTREZGENE
PANTHER PTHR14307 UniProtKB/TrEMBL
Pfam BAG6 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  DUF4661 UniProtKB/TrEMBL
  ubiquitin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE UBIQUITIN_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  UBIQUITIN_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART UBQ UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF54236 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A068C697_PIG UniProtKB/TrEMBL
  A0A2C9F389_PIG UniProtKB/TrEMBL
  A0A2C9F3E5_PIG UniProtKB/TrEMBL
  A0A2C9F3H8_PIG UniProtKB/TrEMBL
  A0A4X1VFG6_PIG UniProtKB/TrEMBL
  A0A4X1VFH3_PIG UniProtKB/TrEMBL
  A0A4X1VFI1_PIG UniProtKB/TrEMBL
  A0A4X1VGI6_PIG UniProtKB/TrEMBL
  A0A4X1VI64_PIG UniProtKB/TrEMBL
  A0A5G2QAF4_PIG UniProtKB/TrEMBL
  A0A5G2R075_PIG UniProtKB/TrEMBL
  A5D9M6 ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary A5D9M5 UniProtKB/Swiss-Prot
  A5D9M7 UniProtKB/Swiss-Prot
  B9TSQ3 UniProtKB/Swiss-Prot
VGNC ID VGNC:97900 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-10-16 BAG6  BAG cochaperone 6  BAG6  BCL2 associated athanogene 6  Symbol and/or name change 5135510 APPROVED