RLBP1 (retinaldehyde binding protein 1) - Rat Genome Database

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Gene: RLBP1 (retinaldehyde binding protein 1) Sus scrofa
Analyze
Symbol: RLBP1
Name: retinaldehyde binding protein 1
RGD ID: 14009541
Description: ENCODES a protein that exhibits 11-cis retinal binding (inferred); phosphatidylinositol bisphosphate binding (inferred); PARTICIPATES IN altered retinoid cycle metabolic pathway; retinitis pigmentosa pathway; retinoid cycle metabolic pathway; ASSOCIATED WITH Alpers-Huttenlocher syndrome (ortholog); Bloom syndrome (ortholog); Bothnia retinal dystrophy (ortholog); FOUND IN cell body (ortholog); INTERACTS WITH deoxynivalenol
Type: protein-coding
RefSeq Status: MODEL
Previously known as: retinaldehyde-binding protein 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl754,776,113 - 54,889,014 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1754,783,965 - 54,800,008 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2759,759,346 - 59,775,286 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cell body  (ISO)
centrosome  (IEA)
cytosol  (IEA)
membrane  (IEA)
nucleoplasm  (IEA)

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
RLBP1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl754,776,113 - 54,889,014 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1754,783,965 - 54,800,008 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2759,759,346 - 59,775,286 (-)NCBISscrofa10.2Sscrofa10.2susScr3
RLBP1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381589,209,869 - 89,221,579 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1589,209,869 - 89,221,614 (-)EnsemblGRCh38hg38GRCh38
GRCh371589,753,100 - 89,764,810 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361587,554,102 - 87,565,926 (-)NCBINCBI36Build 36hg18NCBI36
Build 341587,554,102 - 87,565,926NCBI
Celera1566,154,386 - 66,166,204 (-)NCBICelera
Cytogenetic Map15q26.1NCBI
HuRef1565,865,051 - 65,876,811 (-)NCBIHuRef
CHM1_11589,594,080 - 89,605,905 (-)NCBICHM1_1
T2T-CHM13v2.01586,964,701 - 86,976,409 (-)NCBIT2T-CHM13v2.0
Rlbp1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39779,024,613 - 79,041,989 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl779,024,618 - 79,036,796 (-)EnsemblGRCm39 Ensembl
GRCm38779,374,865 - 79,392,250 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl779,374,870 - 79,387,048 (-)EnsemblGRCm38mm10GRCm38
MGSCv37786,519,756 - 86,531,913 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36779,248,384 - 79,258,298 (-)NCBIMGSCv36mm8
Celera776,771,983 - 76,784,152 (-)NCBICelera
Cytogenetic Map7D2NCBI
cM Map745.0NCBI
Rlbp1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81142,718,262 - 142,731,621 (-)NCBIGRCr8
mRatBN7.21133,308,920 - 133,322,296 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1133,308,938 - 133,322,296 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1141,217,953 - 141,231,346 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01148,387,376 - 148,400,769 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01141,305,075 - 141,318,468 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01141,097,789 - 141,111,375 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1141,097,695 - 141,111,400 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01142,059,882 - 142,073,463 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41135,122,063 - 135,135,420 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11135,201,061 - 135,219,115 (-)NCBI
Celera1125,372,094 - 125,385,448 (-)NCBICelera
Cytogenetic Map1q31NCBI
Rlbp1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541615,862,426 - 15,873,327 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541615,862,510 - 15,873,261 (+)NCBIChiLan1.0ChiLan1.0
RLBP1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21678,756,312 - 78,769,640 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11582,460,801 - 82,474,300 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01567,901,276 - 67,913,911 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11587,108,815 - 87,117,971 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1587,108,815 - 87,117,971 (-)Ensemblpanpan1.1panPan2
RLBP1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1352,260,872 - 52,282,532 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl352,260,944 - 52,282,134 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha354,896,890 - 54,917,412 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0352,679,708 - 52,700,241 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl352,679,781 - 52,700,236 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1352,202,149 - 52,222,270 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0352,412,790 - 52,432,911 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0352,751,756 - 52,772,280 (-)NCBIUU_Cfam_GSD_1.0
Rlbp1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640131,236,419 - 131,247,998 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648315,084,756 - 15,096,072 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493648315,086,485 - 15,097,980 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RLBP1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1297,756,742 - 7,769,061 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl297,757,158 - 7,765,777 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605939,059,553 - 39,071,474 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rlbp1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476816,406,925 - 16,421,385 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476816,410,328 - 16,423,722 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in RLBP1
598 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium
Low 1 2 3 4 2 23 2 3 1
Below cutoff 9 2 1 2

Sequence


Reference Sequences
RefSeq Acc Id: ENSSSCT00000002058   ⟹   ENSSSCP00000002009
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl754,783,969 - 54,799,822 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000046543   ⟹   ENSSSCP00000058384
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl754,776,113 - 54,889,014 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000049467   ⟹   ENSSSCP00000057706
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl754,776,113 - 54,799,822 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000057356   ⟹   ENSSSCP00000041134
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl754,776,113 - 54,889,014 (-)Ensembl
RefSeq Acc Id: XM_003356660   ⟹   XP_003356708
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1754,783,965 - 54,800,008 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021098958   ⟹   XP_020954617
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1754,783,965 - 54,800,006 (-)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: XP_003356708   ⟸   XM_003356660
- Peptide Label: isoform X1
- UniProtKB: A0A4X1U3G6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020954617   ⟸   XM_021098958
- Peptide Label: isoform X2
- UniProtKB: A0A8D1IGI6 (UniProtKB/TrEMBL),   F1SK35 (UniProtKB/TrEMBL),   A0A4X1U3G6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000057706   ⟸   ENSSSCT00000049467
RefSeq Acc Id: ENSSSCP00000002009   ⟸   ENSSSCT00000002058
RefSeq Acc Id: ENSSSCP00000058384   ⟸   ENSSSCT00000046543
RefSeq Acc Id: ENSSSCP00000041134   ⟸   ENSSSCT00000057356
Protein Domains
CRAL-TRIO


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000001836 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00005028193 UniProtKB/TrEMBL
  ENSSSCG00015037095 UniProtKB/TrEMBL
  ENSSSCG00025075948 UniProtKB/TrEMBL
  ENSSSCG00030024366 UniProtKB/TrEMBL
  ENSSSCG00035080434 UniProtKB/TrEMBL
  ENSSSCG00040072083 UniProtKB/TrEMBL
  ENSSSCG00045026193 UniProtKB/TrEMBL
  ENSSSCG00050031933 UniProtKB/TrEMBL
  ENSSSCG00055007282 UniProtKB/TrEMBL
  ENSSSCG00060075359 UniProtKB/TrEMBL
  ENSSSCG00065041447 UniProtKB/TrEMBL
  ENSSSCG00070013863 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000002058 ENTREZGENE
  ENSSSCT00000002058.4 UniProtKB/TrEMBL
  ENSSSCT00000046543.3 UniProtKB/TrEMBL
  ENSSSCT00000049467.3 UniProtKB/TrEMBL
  ENSSSCT00000057356.3 UniProtKB/TrEMBL
  ENSSSCT00005045008.1 UniProtKB/TrEMBL
  ENSSSCT00005045049.1 UniProtKB/TrEMBL
  ENSSSCT00015050184.1 UniProtKB/TrEMBL
  ENSSSCT00025105043.1 UniProtKB/TrEMBL
  ENSSSCT00030033971.1 UniProtKB/TrEMBL
  ENSSSCT00035110223.1 UniProtKB/TrEMBL
  ENSSSCT00040099403.1 UniProtKB/TrEMBL
  ENSSSCT00045045074.1 UniProtKB/TrEMBL
  ENSSSCT00050042955.1 UniProtKB/TrEMBL
  ENSSSCT00055014384.1 UniProtKB/TrEMBL
  ENSSSCT00060103531.1 UniProtKB/TrEMBL
  ENSSSCT00065056723.1 UniProtKB/TrEMBL
  ENSSSCT00070027064.1 UniProtKB/TrEMBL
Gene3D-CATH 3.40.525.10 UniProtKB/TrEMBL
  Alpha-tocopherol transfer UniProtKB/TrEMBL
  N-terminal domain of phosphatidylinositol transfer protein sec14p UniProtKB/TrEMBL
InterPro CRAL-TRIO_dom UniProtKB/TrEMBL
  CRAL-TRIO_dom_sf UniProtKB/TrEMBL
  CRAL/TRIO_N_dom UniProtKB/TrEMBL
  CRAL/TRIO_N_dom_sf UniProtKB/TrEMBL
NCBI Gene RLBP1 ENTREZGENE
PANTHER ALPHA-TOCOPHEROL TRANSFER PROTEIN-RELATED UniProtKB/TrEMBL
  PTHR10174:SF200 UniProtKB/TrEMBL
Pfam CRAL_TRIO UniProtKB/TrEMBL
  CRAL_TRIO_N UniProtKB/TrEMBL
PRINTS CRETINALDHBP UniProtKB/TrEMBL
PROSITE CRAL_TRIO UniProtKB/TrEMBL
SMART CRAL_TRIO_N UniProtKB/TrEMBL
  SEC14 UniProtKB/TrEMBL
Superfamily-SCOP SSF46938 UniProtKB/TrEMBL
  SSF52087 UniProtKB/TrEMBL
UniProt A0A287BNP8_PIG UniProtKB/TrEMBL
  A0A4X1TYG3_PIG UniProtKB/TrEMBL
  A0A4X1U3G6 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1U3G9_PIG UniProtKB/TrEMBL
  A0A8D1IGI6 ENTREZGENE, UniProtKB/TrEMBL
  F1SK35 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary A0A287ABG0 UniProtKB/TrEMBL
  A0A287BQJ6 UniProtKB/TrEMBL
VGNC ID VGNC:92327 ENTREZGENE