GASK1A (golgi associated kinase 1A) - Rat Genome Database

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Gene: GASK1A (golgi associated kinase 1A) Sus scrofa
Analyze
Symbol: GASK1A
Name: golgi associated kinase 1A
RGD ID: 14008852
Description: ASSOCIATED WITH congenital muscular dystrophy-dystroglycanopathy type A8 (ortholog); genetic disease (ortholog); FOUND IN endoplasmic reticulum (ortholog); extracellular region (ortholog); intracellular membrane-bounded organelle (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: FAM198A; family with sequence similarity 198 member A
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1326,415,710 - 26,473,645 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11326,415,637 - 26,473,649 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21329,168,962 - 29,181,652 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
GASK1A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1326,415,710 - 26,473,645 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11326,415,637 - 26,473,649 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21329,168,962 - 29,181,652 (-)NCBISscrofa10.2Sscrofa10.2susScr3
GASK1A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38342,979,311 - 43,057,715 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl342,979,087 - 43,067,898 (+)EnsemblGRCh38hg38GRCh38
GRCh37343,020,803 - 43,099,207 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36342,995,763 - 43,074,211 (+)NCBINCBI36Build 36hg18NCBI36
Celera342,958,596 - 43,036,717 (+)NCBICelera
Cytogenetic Map3p22.1NCBI
HuRef343,063,911 - 43,142,036 (+)NCBIHuRef
CHM1_1342,970,704 - 43,048,832 (+)NCBICHM1_1
T2T-CHM13v2.0342,994,952 - 43,073,043 (+)NCBIT2T-CHM13v2.0
Gask1a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm399121,780,057 - 121,817,379 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl9121,780,054 - 121,809,275 (+)EnsemblGRCm39 Ensembl
GRCm389121,950,988 - 121,988,313 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl9121,950,988 - 121,980,209 (+)EnsemblGRCm38mm10GRCm38
MGSCv379121,861,852 - 121,887,803 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv369121,801,432 - 121,827,385 (+)NCBIMGSCv36mm8
Celera9122,428,461 - 122,453,585 (+)NCBICelera
Cytogenetic Map9F4NCBI
cM Map972.76NCBI
Gask1a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr88130,488,279 - 130,521,242 (+)NCBIGRCr8
mRatBN7.28121,610,779 - 121,643,742 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl8121,610,787 - 121,642,942 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx8127,202,332 - 127,238,573 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.08125,401,409 - 125,437,644 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.08123,231,119 - 123,264,497 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.08130,581,072 - 130,614,118 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl8130,581,062 - 130,612,510 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.08129,756,079 - 129,789,361 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.48126,953,763 - 126,991,033 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.18126,977,122 - 127,007,592 (-)NCBI
Celera8120,735,518 - 120,768,086 (+)NCBICelera
Cytogenetic Map8q32NCBI
Gask1a
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542027,901,885 - 27,952,998 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542027,900,342 - 27,931,079 (-)NCBIChiLan1.0ChiLan1.0
GASK1A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2242,902,830 - 43,025,371 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1342,907,592 - 43,035,181 (+)NCBINHGRI_mPanPan1
GASK1A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12312,019,079 - 12,085,993 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2312,034,221 - 12,085,293 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2311,979,016 - 12,061,600 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02312,294,713 - 12,377,445 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2312,323,816 - 12,380,574 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12312,096,868 - 12,179,732 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02312,239,116 - 12,321,841 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02312,242,835 - 12,325,526 (+)NCBIUU_Cfam_GSD_1.0
Gask1a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118199,798,226 - 199,854,605 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366952,150,559 - 2,206,982 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366952,150,547 - 2,206,931 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GASK1A
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1224,425,802 - 4,506,027 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl224,426,912 - 4,506,776 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666041162,692,097 - 162,772,597 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Gask1a
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473076,833,745 - 76,873,600 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473076,833,237 - 76,875,323 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in GASK1A
1937 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 2
Low 7 2 3 5 2 21 2 2 1
Below cutoff 1 2 1

Sequence


RefSeq Acc Id: ENSSSCT00000012364   ⟹   ENSSSCP00000012041
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1326,457,283 - 26,473,645 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000046213   ⟹   ENSSSCP00000050191
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1326,415,713 - 26,473,634 (+)Ensembl
RefSeq Acc Id: XM_013981528   ⟹   XP_013836982
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11326,415,637 - 26,473,649 (+)NCBI
Sequence:
RefSeq Acc Id: XP_013836982   ⟸   XM_013981528
- UniProtKB: A0A8D1WZM5 (UniProtKB/TrEMBL),   A0A8D0KA59 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000012041   ⟸   ENSSSCT00000012364
RefSeq Acc Id: ENSSSCP00000050191   ⟸   ENSSSCT00000046213


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000011294 Ensembl, UniProtKB/TrEMBL
  ENSSSCG00005038749 UniProtKB/TrEMBL
  ENSSSCG00015006122 UniProtKB/TrEMBL
  ENSSSCG00025031515 UniProtKB/TrEMBL
  ENSSSCG00030024287 UniProtKB/TrEMBL
  ENSSSCG00035056480 UniProtKB/TrEMBL
  ENSSSCG00040070456 UniProtKB/TrEMBL
  ENSSSCG00045010143 UniProtKB/TrEMBL
  ENSSSCG00050025283 UniProtKB/TrEMBL
  ENSSSCG00055001633 UniProtKB/TrEMBL
  ENSSSCG00060077756 UniProtKB/TrEMBL
  ENSSSCG00065027252 UniProtKB/TrEMBL
  ENSSSCG00070009355 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000046213.3 UniProtKB/TrEMBL
  ENSSSCT00005062061.1 UniProtKB/TrEMBL
  ENSSSCT00005062086.1 UniProtKB/TrEMBL
  ENSSSCT00015008136.1 UniProtKB/TrEMBL
  ENSSSCT00025042855.1 UniProtKB/TrEMBL
  ENSSSCT00030033781.1 UniProtKB/TrEMBL
  ENSSSCT00035075429.1 UniProtKB/TrEMBL
  ENSSSCT00040096666.1 UniProtKB/TrEMBL
  ENSSSCT00045017164.1 UniProtKB/TrEMBL
  ENSSSCT00050034028.1 UniProtKB/TrEMBL
  ENSSSCT00055002971.1 UniProtKB/TrEMBL
  ENSSSCT00060107168.1 UniProtKB/TrEMBL
  ENSSSCT00065036692.1 UniProtKB/TrEMBL
  ENSSSCT00070018145.1 UniProtKB/TrEMBL
  ENSSSCT00070018149.1 UniProtKB/TrEMBL
InterPro FAM198 UniProtKB/TrEMBL
NCBI Gene GASK1A ENTREZGENE
PANTHER GOLGI-ASSOCIATED KINASE 1A UniProtKB/TrEMBL
  PTHR15905 UniProtKB/TrEMBL
Pfam FAM198 UniProtKB/TrEMBL
UniProt A0A287B1Z8_PIG UniProtKB/TrEMBL
  A0A4X1TF45_PIG UniProtKB/TrEMBL
  A0A4X1TIV4_PIG UniProtKB/TrEMBL
  A0A8D0K671_PIG UniProtKB/TrEMBL
  A0A8D0KA59 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0RU06_PIG UniProtKB/TrEMBL
  A0A8D1FTT1_PIG UniProtKB/TrEMBL
  A0A8D1H0J7_PIG UniProtKB/TrEMBL
  A0A8D1WZM5 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:88361 ENTREZGENE