MIR144 (microRNA mir-144) - Rat Genome Database

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Gene: MIR144 (microRNA mir-144) Sus scrofa
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Symbol: MIR144
Name: microRNA mir-144
RGD ID: 14005473
Description: microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]
Type: ncrna
RefSeq Status: PROVISIONAL
Previously known as: microRNA 144; ssc-mir-144
RGD Orthologs
Human
Mouse
Rat
Dog
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1245,088,959 - 45,089,035 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11245,088,958 - 45,089,033 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21247,176,953 - 47,177,028 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:16381832   PMID:21312241  


Genomics

Comparative Map Data
MIR144
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1245,088,959 - 45,089,035 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11245,088,958 - 45,089,033 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21247,176,953 - 47,177,028 (+)NCBISscrofa10.2Sscrofa10.2susScr3
MIR144
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381728,861,533 - 28,861,618 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl1728,861,533 - 28,861,618 (-)EnsemblGRCh38hg38GRCh38
GRCh371727,188,551 - 27,188,636 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361724,212,676 - 24,212,761 (-)NCBINCBI36hg18NCBI36
Celera1724,047,975 - 24,048,060 (-)NCBI
Cytogenetic Map17q11.2NCBI
HuRef1723,396,841 - 23,396,926 (-)NCBIHuRef
CHM1_11727,251,065 - 27,251,150 (-)NCBICHM1_1
T2T-CHM13v2.01729,804,306 - 29,804,391 (-)NCBI
Mir144
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391177,963,831 - 77,963,896 (+)NCBIGRCm39mm39
GRCm39 Ensembl1177,963,831 - 77,963,896 (+)Ensembl
GRCm381178,073,005 - 78,073,070 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1178,073,005 - 78,073,070 (+)EnsemblGRCm38mm10GRCm38
MGSCv371177,886,507 - 77,886,572 (+)NCBIGRCm37mm9NCBIm37
Celera1185,572,607 - 85,572,672 (+)NCBICelera
Cytogenetic Map11B5NCBI
Mir144
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21062,961,348 - 62,961,430 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl1062,961,348 - 62,961,430 (+)Ensembl
Rnor_6.01065,291,365 - 65,291,447 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1065,291,365 - 65,291,447 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01066,340,681 - 66,340,763 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera1061,939,438 - 61,939,520 (+)NCBICelera
Cytogenetic Map10q25NCBI
MIR144
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1943,031,035 - 43,031,094 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl943,031,035 - 43,031,094 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha942,186,177 - 42,186,236 (-)NCBI
ROS_Cfam_1.0943,848,755 - 43,848,814 (-)NCBI
ROS_Cfam_1.0 Ensembl943,848,755 - 43,848,814 (-)Ensembl
UMICH_Zoey_3.1942,632,295 - 42,632,354 (-)NCBI
UNSW_CanFamBas_1.0942,924,318 - 42,924,377 (-)NCBI
UU_Cfam_GSD_1.0943,002,958 - 43,003,017 (-)NCBI


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

nervous system
High
Medium
Low 3
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSSSCT00000020988
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1245,088,959 - 45,089,035 (-)Ensembl
RefSeq Acc Id: NR_128419
RefSeq Status: PROVISIONAL
Type: NON-CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11245,088,958 - 45,089,033 (-)NCBI
Sequence:

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000019393 Ensembl, ENTREZGENE
Ensembl Transcript ENSSSCT00000020988 ENTREZGENE
miRBase MI0022132 ENTREZGENE
NCBI Gene MIR144 ENTREZGENE
RNAcentral URS0000190BB9 RNACentral
  URS00007E4A78 RNACentral


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-04-02 MIR144  microRNA mir-144    microRNA 144  Symbol and/or name change 5135510 APPROVED