MTM1 (myotubularin 1) - Rat Genome Database

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Gene: MTM1 (myotubularin 1) Sus scrofa
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Symbol: MTM1
Name: myotubularin 1
RGD ID: 14005411
Description: ENCODES a protein that exhibits phosphoprotein phosphatase activity (ortholog); INVOLVED IN mitochondrion distribution (ortholog); muscle cell cellular homeostasis (ortholog); negative regulation of autophagosome assembly (ortholog); ASSOCIATED WITH autistic disorder (ortholog); centronuclear myopathy (ortholog); centronuclear myopathy 1 (ortholog); FOUND IN cytoplasm (ortholog); I band (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: myotubularin
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 EnsemblX122,286,916 - 122,379,299 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1X122,286,904 - 122,379,302 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2X139,901,788 - 139,994,207 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Comparative Map Data
MTM1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 EnsemblX122,286,916 - 122,379,299 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1X122,286,904 - 122,379,302 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2X139,901,788 - 139,994,207 (+)NCBISscrofa10.2Sscrofa10.2susScr3
MTM1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 EnsemblX150,568,621 - 150,673,143 (+)EnsemblGRCh38hg38GRCh38
GRCh38X150,562,658 - 150,673,143 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh37X149,737,071 - 149,841,616 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36X149,487,727 - 149,592,272 (+)NCBINCBI36hg18NCBI36
Build 34X149,407,636 - 149,512,182NCBI
CeleraX149,984,899 - 150,089,187 (+)NCBI
Cytogenetic MapXq28NCBI
HuRefX138,597,863 - 138,702,094 (+)NCBIHuRef
CHM1_1X149,611,646 - 149,715,992 (+)NCBICHM1_1
Mtm1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X70,254,373 - 70,359,019 (+)NCBIGRCm39mm39
GRCm39 EnsemblX70,254,373 - 70,359,297 (+)Ensembl
GRCm38X71,210,767 - 71,315,413 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX71,210,767 - 71,315,691 (+)EnsemblGRCm38mm10GRCm38
MGSCv37X68,463,942 - 68,568,470 (+)NCBIGRCm37mm9NCBIm37
MGSCv36X67,475,638 - 67,575,821 (+)NCBImm8
CeleraX62,185,213 - 62,295,121 (+)NCBICelera
Cytogenetic MapXA7.2- A7.3NCBI
cM MapX36.55NCBI
Mtm1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.26488,691 - 506,964 (-)NCBI
Rnor_6.0 Ensembl618,821,815 - 18,839,409 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0618,821,821 - 18,840,449 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0628,722,724 - 28,736,560 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.47247,960 - 265,281 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.17247,959 - 265,280 (+)NCBI
Celera6311,677 - 329,242 (-)NCBICelera
Cytogenetic Map6q12NCBI
Mtm1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554986,329,275 - 6,445,169 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554986,329,402 - 6,444,708 (+)NCBIChiLan1.0ChiLan1.0
MTM1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1X150,174,762 - 150,255,381 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 EnsemblX150,174,758 - 150,255,381 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0X140,218,742 - 140,323,495 (+)NCBIMhudiblu_PPA_v0panPan3
MTM1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1X118,820,644 - 118,917,166 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 EnsemblX118,820,494 - 118,916,368 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_TashaX104,201,980 - 104,298,484 (+)NCBI
ROS_Cfam_1.0X121,040,671 - 121,137,182 (+)NCBI
UMICH_Zoey_3.1X117,766,609 - 117,863,103 (+)NCBI
UNSW_CanFamBas_1.0X120,208,871 - 120,297,026 (+)NCBI
UU_Cfam_GSD_1.0X120,127,109 - 120,223,642 (+)NCBI
Mtm1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2X116,358,970 - 116,463,514 (+)NCBI
SpeTri2.0NW_0049367141,792,893 - 1,870,338 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MTM1
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1X125,151,279 - 125,250,816 (+)NCBI
ChlSab1.1 EnsemblX125,174,289 - 125,249,588 (+)Ensembl
Vero_WHO_p1.0NW_02366606562,852,091 - 62,955,331 (+)NCBI
Mtm1
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_004624923952,782 - 1,062,391 (+)NCBI


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 1 1 2
Low 9 4 3 4 2 23 3 3
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSSSCT00000037235   ⟹   ENSSSCP00000034103
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 EnsemblX122,298,425 - 122,379,179 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000044618   ⟹   ENSSSCP00000055715
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 EnsemblX122,298,425 - 122,379,179 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000047632   ⟹   ENSSSCP00000054496
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 EnsemblX122,290,639 - 122,378,376 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000055968   ⟹   ENSSSCP00000038346
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 EnsemblX122,286,916 - 122,379,299 (+)Ensembl
RefSeq Acc Id: XM_003135463   ⟹   XP_003135511
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1X122,286,904 - 122,378,681 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013991044   ⟹   XP_013846498
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1X122,292,461 - 122,379,302 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013991045   ⟹   XP_013846499
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1X122,292,461 - 122,378,681 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021080833   ⟹   XP_020936492
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1X122,292,461 - 122,371,858 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021080835   ⟹   XP_020936494
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1X122,288,504 - 122,378,681 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021080836   ⟹   XP_020936495
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1X122,292,461 - 122,378,681 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021080837   ⟹   XP_020936496
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1X122,286,940 - 122,378,681 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021080838   ⟹   XP_020936497
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1X122,293,545 - 122,378,681 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021080839   ⟹   XP_020936498
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1X122,290,727 - 122,378,681 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021080840   ⟹   XP_020936499
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1X122,286,907 - 122,379,302 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021080841   ⟹   XP_020936500
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1X122,286,907 - 122,378,681 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021080842   ⟹   XP_020936501
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1X122,286,907 - 122,378,681 (+)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: XP_003135511   ⟸   XM_003135463
- Peptide Label: isoform X4
- UniProtKB: A0A287BD71 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020936499   ⟸   XM_021080840
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_020936500   ⟸   XM_021080841
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_020936501   ⟸   XM_021080842
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_020936496   ⟸   XM_021080837
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_020936494   ⟸   XM_021080835
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_020936498   ⟸   XM_021080839
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_013846498   ⟸   XM_013991044
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_013846499   ⟸   XM_013991045
- Peptide Label: isoform X3
- UniProtKB: A0A287A329 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020936495   ⟸   XM_021080836
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_020936492   ⟸   XM_021080833
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_020936497   ⟸   XM_021080838
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: ENSSSCP00000055715   ⟸   ENSSSCT00000044618
RefSeq Acc Id: ENSSSCP00000038346   ⟸   ENSSSCT00000055968
RefSeq Acc Id: ENSSSCP00000034103   ⟸   ENSSSCT00000037235
RefSeq Acc Id: ENSSSCP00000054496   ⟸   ENSSSCT00000047632

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000012742 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00070004636 UniProtKB/TrEMBL
Ensembl Protein ENSSSCP00000034103 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCP00000038346 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCP00000054496 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCP00000055715 UniProtKB/TrEMBL
  ENSSSCP00070007247 UniProtKB/TrEMBL
  ENSSSCP00070007262 UniProtKB/TrEMBL
  ENSSSCP00070007274 UniProtKB/TrEMBL
  ENSSSCP00070007282 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000037235 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCT00000044618 UniProtKB/TrEMBL
  ENSSSCT00000047632 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCT00000055968 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCT00070008829 UniProtKB/TrEMBL
  ENSSSCT00070008846 UniProtKB/TrEMBL
  ENSSSCT00070008860 UniProtKB/TrEMBL
  ENSSSCT00070008868 UniProtKB/TrEMBL
Gene3D-CATH 2.30.29.30 UniProtKB/TrEMBL
InterPro GRAM UniProtKB/TrEMBL
  Myotubularin UniProtKB/TrEMBL
  Myotubularin-like_Pase_dom UniProtKB/TrEMBL
  Myotubularin_fam UniProtKB/TrEMBL
  PH-like_dom_sf UniProtKB/TrEMBL
  Prot-tyrosine_phosphatase-like UniProtKB/TrEMBL
  Tyr_Pase_AS UniProtKB/TrEMBL
  Tyr_Pase_cat UniProtKB/TrEMBL
  TYR_PHOSPHATASE_dom UniProtKB/TrEMBL
KEGG Report ssc:100516892 UniProtKB/TrEMBL
NCBI Gene MTM1 ENTREZGENE
PANTHER PTHR10807 UniProtKB/TrEMBL
  PTHR10807:SF69 UniProtKB/TrEMBL
Pfam GRAM UniProtKB/TrEMBL
  Myotub-related UniProtKB/TrEMBL
PROSITE PPASE_MYOTUBULARIN UniProtKB/TrEMBL
  TYR_PHOSPHATASE_1 UniProtKB/TrEMBL
  TYR_PHOSPHATASE_2 UniProtKB/TrEMBL
SMART GRAM UniProtKB/TrEMBL
  PTPc_motif UniProtKB/TrEMBL
Superfamily-SCOP SSF52799 UniProtKB/TrEMBL
UniProt A0A286ZR95_PIG UniProtKB/TrEMBL
  A0A287A329 ENTREZGENE, UniProtKB/TrEMBL
  A0A287BD71 ENTREZGENE, UniProtKB/TrEMBL
  A0A287BGQ4_PIG UniProtKB/TrEMBL
  A0A4X1SWJ2_PIG UniProtKB/TrEMBL
  A0A4X1SXZ1_PIG UniProtKB/TrEMBL
  A0A4X1SY53_PIG UniProtKB/TrEMBL
  A0A4X1SY68_PIG UniProtKB/TrEMBL
VGNC ID VGNC:90455 ENTREZGENE