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Gene: LHX6 (LIM homeobox 6) Sus scrofa

Analyze

Symbol:

LHX6

Name:

LIM homeobox 6

RGD ID:

14005249

Description:

ENCODES a protein that exhibits DNA binding (inferred); DNA-binding transcription factor activity, RNA polymerase II-specific (inferred); metal ion binding (inferred); INVOLVED IN cerebral cortex GABAergic interneuron migration (ortholog); cerebral cortex neuron differentiation (ortholog); cerebral cortex radially oriented cell migration (ortholog); FOUND IN nucleus (inferred)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

LIM/homeobox protein Lhx6

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	LHX6 (LIM homeobox 6)	HGNC	EggNOG, Ensembl, NCBI, OMA, OrthoDB, Panther, Treefam
Mus musculus (house mouse):	Lhx6 (LIM homeobox protein 6)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus norvegicus (Norway rat):	Lhx6 (LIM homeobox 6)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Lhx6 (LIM homeobox 6)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	LHX6 (LIM homeobox 6)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	LHX6 (LIM homeobox 6)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Lhx6 (LIM homeobox 6)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	LHX6 (LIM homeobox 6)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Lhx6 (LIM homeobox 6)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline

Latest Assembly:

Sscrofa11.1 - Pig Sscrofa11.1 Assembly

Position:

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	1	262,295,353 - 262,322,530 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	1	262,297,557 - 262,322,777 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	1	294,597,333 - 294,622,577 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

cerebral cortex GABAergic interneuron migration (ISO)

cerebral cortex neuron differentiation (ISO)

cerebral cortex radially oriented cell migration (ISO)

cerebral cortex tangential migration (ISO)

forebrain neuron development (IBA,ISO)

forebrain neuron fate commitment (ISO)

neuron differentiation (IBA)

neuron maturation (ISO)

neuron migration (ISO)

regulation of DNA-templated transcription (IEA)

regulation of transcription by RNA polymerase II (IBA,IEA)

Cellular Component

nucleus (IBA,IEA)

Molecular Function

DNA binding (IEA)

DNA-binding transcription factor activity, RNA polymerase II-specific (IBA,IEA)

metal ion binding (IEA)

protein binding (ISO)

RNA polymerase II transcription regulatory region sequence-specific DNA binding (IBA)

sequence-specific double-stranded DNA binding (IEA)

References

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

LHX6
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	1	262,295,353 - 262,322,530 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	1	262,297,557 - 262,322,777 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	1	294,597,333 - 294,622,577 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

LHX6
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	9	122,202,582 - 122,228,957 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	9	122,202,577 - 122,229,626 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	9	124,964,861 - 124,991,236 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	9	124,004,679 - 124,030,840 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	9	95,613,158 - 95,639,326 (-)	NCBI		Celera
Cytogenetic Map	9	q33.2	NCBI
HuRef	9	94,579,638 - 94,605,760 (-)	NCBI		HuRef
CHM1_1	9	125,112,910 - 125,139,147 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	9	134,400,069 - 134,426,451 (-)	NCBI		T2T-CHM13v2.0

Lhx6
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	2	35,971,962 - 35,996,004 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	2	35,971,965 - 35,995,420 (-)	Ensembl		GRCm39 Ensembl
GRCm38	2	36,081,950 - 36,105,992 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	2	36,081,953 - 36,105,408 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	2	35,937,473 - 35,960,928 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	2	35,905,548 - 35,927,280 (-)	NCBI		MGSCv36	mm8
Celera	2	35,785,674 - 35,809,139 (-)	NCBI		Celera
Cytogenetic Map	2	B	NCBI
cM Map	2	24.17	NCBI

Lhx6
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	3	39,829,846 - 39,853,681 (-)	NCBI		GRCr8
mRatBN7.2	3	19,432,439 - 19,456,268 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	19,433,494 - 19,456,061 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	3	22,510,924 - 22,534,512 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	3	31,095,849 - 31,119,442 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	3	29,343,118 - 29,366,747 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	3	15,409,349 - 15,433,504 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	15,411,939 - 15,433,252 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	3	20,718,972 - 20,742,583 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	3	15,192,524 - 15,216,076 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	3	15,088,870 - 15,113,701 (-)	NCBI
Celera	3	14,144,852 - 14,168,405 (-)	NCBI		Celera
Cytogenetic Map	3	p11	NCBI

Lhx6
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955419	5,834,547 - 5,858,113 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955419	5,835,230 - 5,858,096 (+)	NCBI	ChiLan1.0	ChiLan1.0

LHX6
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	11	17,117,476 - 17,172,379 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	9	17,119,825 - 17,174,732 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	9	93,303,447 - 93,353,896 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	9	121,668,585 - 121,693,605 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	9	121,670,707 - 121,694,378 (-)	Ensembl	panpan1.1		panPan2

LHX6
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	9	60,348,529 - 60,374,037 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	9	60,348,335 - 60,374,024 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	9	59,543,996 - 59,581,491 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	9	61,263,724 - 61,301,199 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	9	61,263,679 - 61,289,115 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	9	60,037,892 - 60,075,327 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	9	60,354,214 - 60,391,774 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	9	60,442,894 - 60,480,404 (+)	NCBI		UU_Cfam_GSD_1.0

Lhx6
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404947	190,823,007 - 190,847,434 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936487	10,591,532 - 10,616,017 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936487	10,591,532 - 10,616,017 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

LHX6
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	12	17,364,693 - 17,392,756 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	12	17,366,826 - 17,386,276 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666035	25,656,604 - 25,683,197 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Lhx6
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624760	13,066,703 - 13,097,468 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624760	13,066,632 - 13,092,006 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in LHX6
731 total Variants

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	circulatory system	ectoderm	hemolymphoid system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system
3	4	11	4	8	11	11	1	2	1

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_021068367	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021068376	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021068384	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021068392	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AEMK02000005	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK390019	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GFLN01130695	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSSSCT00000006081 ⟹ ENSSSCP00000005926

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	1	262,298,686 - 262,321,928 (-)	Ensembl

Ensembl Acc Id:

ENSSSCT00000073213 ⟹ ENSSSCP00000062351

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	1	262,297,558 - 262,322,493 (-)	Ensembl

Ensembl Acc Id:

ENSSSCT00000076807 ⟹ ENSSSCP00000072995

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	1	262,295,353 - 262,321,232 (-)	Ensembl

Ensembl Acc Id:

ENSSSCT00000078868 ⟹ ENSSSCP00000062750

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	1	262,297,561 - 262,322,530 (-)	Ensembl

Ensembl Acc Id:

ENSSSCT00000079228 ⟹ ENSSSCP00000072147

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	1	262,297,588 - 262,314,605 (-)	Ensembl

Ensembl Acc Id:

ENSSSCT00000080673 ⟹ ENSSSCP00000064116

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	1	262,298,686 - 262,322,493 (-)	Ensembl

RefSeq Acc Id:

XM_021068367 ⟹ XP_020924026

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	1	262,297,557 - 262,322,775 (-)	NCBI

Sequence:

show sequence

TGTGTGTCTATATGTCTGTGTGTATGTGTCTCTGGGTCGCTGGCTCGCTGTGTGTGTCTCGCTC
TCCCTCCGCGGGGAGGGGATTGGTCACGCATGACTCATCTTGAACCGAGCGGGGCTCCAGCGGC
AGGGCGGCCGCCACCGCAGCTGGAGGGGGAGGAGGACGAGGAGGAGGGAGAGGAGGAGGAGGAC
TACGAGGAGCGAGAGGAGGAGGAGAAGGAGGGGGCGGGGGCCTCTCCAAGTTTGTCGGGACCTT
CTTCCGAGGCAGCTGCGGCGGCAGCCAGGGAGGCCAGGGCTGCGCGCGGGCCGGGGGCAGGGGC
TGGGGCCGGGCCCGGGGCGGCGGGGCCGGCACCTCGGCTCTCCTGCTGCTCCTGCTTCAGCTTT
TGCTCCCACTGCGGCCGTGGTCCCCCTCCGCGCGGCTCTTCGTGCTGCGCGCCGGCTGAGCCCG
CCGCTCCCCGGCCCATGTACTGGAAGCATGAGAACGCCGCCCCGGCGCTGCCCGAGGGCTGCCG
GCTGCCGGCCAAGGGCGGCCCCACCACCGAGCAGGTGATGGCCCAGCCAGGGTCCGGCTGCAAA
GCGACCACTCGCTGCCTTGAAGGGACCGCGCCGCCCGCCATGGCTCAATCTGACGCTGAGGCCC
TGGCAGGCGCTCTGGACAAGGACGAGGGTCGGGCCTCTCCCTGTACGCCCAGCACGCCATCTGT
CTGTTCACCGCCTTCTGCCGCCTCCTCCGTGCCGTCCGCGGGCAAGAACATCTGCTCCAGCTGC
GGCCTCGAGATCCTGGACCGGTATCTGCTCAAGGTCAACAACCTCATCTGGCACGTGCGGTGCC
TCGAGTGCTCCGTGTGTCGCACGTCGCTGAGGCAGCAGAACAGCTGCTACATCAAGAACAAGGA
AATCTTCTGCAAGATGGACTACTTCAGCCGGTTTGGGACCAAGTGCGCAAGGTGTGGCCGACAG
ATCTACGCCAGCGACTGGGTTCGGCGGGCACGAGGCAACGCCTACCACTTGGCCTGTTTCGCCT
GCTTCTCGTGCAAGCGCCAGCTATCCACCGGCGAGGAGTTTGGCTTGGTCGAGGAGAAGGTGCT
GTGCCGCATCCACTACGACACCATGATTGAAAACCTCAAGAGGGCCGCCGAGAACGGGAACGGC
CTCACGCTGGAGGGGGCAGTGCCCTCGGAACAGGACAGTCAGCCCAAGCCAGCCAAGCGCGCGC
GGACGTCCTTCACCGCCGAACAGTTGCAGGTTATGCAGGCGCAGTTCGCGCAGGACAACAACCC
CGACGCGCAGACGCTGCAGAAGCTTGCGGACATGACGGGCCTCAGCCGAAGGGTCATCCAGGTG
TGGTTTCAAAACTGCCGGGCGCGTCATAAAAAGCACACGCCACAGCATCCCGTGCCGCCCTCCG
GGGCGCCGCCGTCCCGCCTCCCCTCTACCCTGTCCGACGACATCCACTACTCCCCGTTCAGCAG
TCCCGAGCGGGCTCGCATGGTCACCCTGCACGGCTACATTGAGAGTCAGGTACAGTGCGGGCAG
GTGCACTGCCGGCTGCCTTACACCGCGCCCCCCGTCCACCTCAAAGCCGATATGGATGGGCCAC
TCTCCAACCGGGGTGAGAAGGTCATCCTTTTTCAGTACTAACGCTGCCAGCGCTTCCGCATCTG
TCCATGGGCGCCCCACAGCTGCCCCTCAGCCGCTGAAACCCGGAGTTCGAGCCGCTGCCAGGGA
TCCACCCGCTCCACGTCCACCCCTCCTCCGACGTCCTGCCCGCCACCAGCTAGGCCCCCAGGCC
TGGCCTTCCCCTCTCCTGCAGAGAACCAGAACCTGCCAGGAGCACCGCGGAGTCCTTCTCCCGG
AAGGCAGAGCTCCCTGAAATTTGGAGTCAGGGTGAAAACAACAGCCTTGTTTTTCCCATTTAGA
CAGGAGTCATCCTCAGCTTAAGCTGATCACAATAGCAAAAGGCCGAATTGAATTGCGTGACGCC
AACAGCCTTCCAATTTACAGGTTTTCTTTCCTCCCATGTTGGCCTTTATTTACTCCTTCCTTGG
AACCATCTCTGAATTCTGAATAGCTGACAACCCCATGTTATCCATTCTGTTGCTTTTGTCTGGA
AAACTCTACAGTGTTTGTGGGATGTCCCCAAAGGAAAGCTATGTTCTAATTTTATCATTTCCAT
CTGTCTGGTTATGTCAAGTTAATTCAGAGAGAGAAAAGACACTGACCAACCCTGAGAGGCCCAA
TAGGGCAGAGATGGAGGCCTGCCTAGACCAAGAGGCAGAGGGGGTAAGCAGAGCCTGGGAGGGG
ACAAAGACCCCCATTGGTTTGGAGACCCAGGAGAAGGATGTGGCACCTTGGGCTGAGAGAGACA
CTAGCCATTTTAAGGAGGGGAAAGAGGAAACTCGGGGTATGTGTTGGGGGCTCTGCCCCCACCT
AGTTATCCAGCATCTGTGCAGGAGACATAGTAGAGGTGGTCTTTGATCTGTGAGGTGACATTTC
TCAATGTTTGGACAGGTTTGAACTGGGGACCCCTGTTGGCTACTCGTTGACTCCTGATGGGGAT
GCTTGGGCCTCTTATGGGGAACTGGAGAACAGAGACCGGGGAAATGGCAGAGTGGTCATTCTGG
ACCCACCTCTGAGTAGATAGAGGGGGCCCACTGCCTAGGTCAGTGTGCCAAGCCCAGGATTCTG
GCTGTTGCTTCTGGGCTTCCCCATCAACCCTGCCCAGAGCCAGCCCCACCTACCCCTGAGAACG
CAGGCCAGACACAGCTGTGCTCTCATCCATCCTGTCCTGCTATAGCTCCTCCACCCCAGACTAA
AGGTCTTGGGCTCCACGCAGCCATGATTTATGTTTTCAGGGGACGCCCATCTGTCCCAAGCTTA
TCCTCTAATTATAGAAATACTTGGTGTCCTGATGCATTTCCCGCTAGAGGCTGCTAGTAAGCAT
GTTTCAGCCCAAGGTCTTCTTCCTGCTTTGGTTAACCTGATATGTTGCTTTTGGAAGGAGACTC
TAGAGCAGGGAAAGCAAGTTCATGGTACAAAGGTATCGGCTGTCCCTGTTTTCACCCCTGGCAG
ACATCGCTAATCGATTGCAGCACTCTCTATCTCACTGAGTCTGGATAAGGTTTCAGAATCCAAA
TGCTTGAATTTGGCATTTAAAATGAAAACCTATATGCCATTCTCACTATGGGACCTGGAGGAGG
GCTGGGCGTGGATGCAACCCCCAAAGGGAACCTGCTTCTTTTCCCTTTCGAAGATGGTTCCAGC
TGACTCAGGGCAAAGAGAAGGCACCCATTCAGAATGTGATCAGAGCAGCTTGGTTCAAAATTCA
CCCACCCTGCGAATAATGTGTGCCTGGCCCAGTGCTTGGTGCTTATGCTAACAGGAGCAGCTTG
GGTCTGATTGCTGATGTTTGGAGAGCTCTCATGTTTCCTTTGATTTTTTTTGCTCCCAATGATC
ACAGTCCCAAGCACAGTCATGTGGTGAGTGGGTGGCTGAGCCCTGCCCTGGGTCACCCAGTACC
CACTCTGCCTTGAGCCTCCCCCACAGGGTCTGTTCCTTACGTGGATCACATGGTTGTAGCATGT
TGCAGTTCAGACATGTCTCCACTAGCCTGTTAGAGCAGCCTGGGAACGTACAGGCCATCAAGAC
TATTTATTTAAATACGAAACAAAAGGGGGGAAACACATCCACATGGAAAAAAAATTGTAAGCAC
TTTTTTGTAAAACCAATGTCTGTTTTGTTACATACCTTTCATGTTGTGCTTTGTAAATGTCTTA
TTTGTGTAATAAATAAAGTTAATGCAAGTAGAAGTGCTGGCACTTACATCCAGA

hide sequence

RefSeq Acc Id:

XM_021068376 ⟹ XP_020924035

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	1	262,297,557 - 262,322,777 (-)	NCBI

Sequence:

show sequence

TCTGTGTGTCTATATGTCTGTGTGTATGTGTCTCTGGGTCGCTGGCTCGCTGTGTGTGTCTCGC
TCTCCCTCCGCGGGGAGGGGATTGGTCACGCATGACTCATCTTGAACCGAGCGGGGCTCCAGCG
GCAGGGCGGCCGCCACCGCAGCTGGAGGGGGAGGAGGACGAGGAGGAGGGAGAGGAGGAGGAGG
ACTACGAGGAGCGAGAGGAGGAGGAGAAGGAGGGGGCGGGGGCCTCTCCAAGTTTGTCGGGACC
TTCTTCCGAGGCAGCTGCGGCGGCAGCCAGGGAGGCCAGGGCTGCGCGCGGGCCGGGGGCAGGG
GCTGGGGCCGGGCCCGGGGCGGCGGGGCCGGCACCTCGGCTCTCCTGCTGCTCCTGCTTCAGCT
TTTGCTCCCACTGCGGCCGTGGTCCCCCTCCGCGCGGCTCTTCGTGCTGCGCGCCGGCTGAGCC
CGCCGCTCCCCGGCCCATGTACTGGAAGCATGAGAACGCCGCCCCGGCGCTGCCCGAGGGCTGC
CGGCTGCCGGCCAAGGGCGGCCCCACCACCGAGCAGGTGATGGCCCAGCCAGGGTCCGGCTGCA
AAGCGACCACTCGCTGCCTTGAAGGGACCGCGCCGCCCGCCATGGCTCAATCTGACGCTGAGGC
CCTGGCAGGCGCTCTGGACAAGGACGAGGGTCGGGCCTCTCCCTGTACGCCCAGCACGCCATCT
GTCTGTTCACCGCCTTCTGCCGCCTCCTCCGTGCCGTCCGCGGGCAAGAACATCTGCTCCAGCT
GCGGCCTCGAGATCCTGGACCGGTATCTGCTCAAGGTCAACAACCTCATCTGGCACGTGCGGTG
CCTCGAGTGCTCCGTGTGTCGCACGTCGCTGAGGCAGCAGAACAGCTGCTACATCAAGAACAAG
GAAATCTTCTGCAAGATGGACTACTTCAGCCGGTTTGGGACCAAGTGCGCAAGGTGTGGCCGAC
AGATCTACGCCAGCGACTGGGTTCGGCGGGCACGAGGCAACGCCTACCACTTGGCCTGTTTCGC
CTGCTTCTCGTGCAAGCGCCAGCTATCCACCGGCGAGGAGTTTGGCTTGGTCGAGGAGAAGGTG
CTGTGCCGCATCCACTACGACACCATGATTGAAAACCTCAAGAGGGCCGCCGAGAACGGGAACG
GCCTCACGCTGGAGGGGGCAGTGCCCTCGGAACAGGACAGTCAGCCCAAGCCAGCCAAGCGCGC
GCGGACGTCCTTCACCGCCGAACAGTTGCAGGTTATGCAGGCGCAGTTCGCGCAGGACAACAAC
CCCGACGCGCAGACGCTGCAGAAGCTTGCGGACATGACGGGCCTCAGCCGAAGGGTCATCCAGG
TGTGGTTTCAAAACTGCCGGGCGCGTCATAAAAAGCACACGCCACAGCATCCCGTGCCGCCCTC
CGGGGCGCCGCCGTCCCGCCTCCCCTCTACCCTGTCCGACGACATCCACTACTCCCCGTTCAGC
AGTCCCGAGCGGGCTCGCATGGTCACCCTGCACGGCTACATTGAGAGTCATCCTTTTTCAGTAC
TAACGCTGCCAGCGCTTCCGCATCTGTCCATGGGCGCCCCACAGCTGCCCCTCAGCCGCTGAAA
CCCGGAGTTCGAGCCGCTGCCAGGGATCCACCCGCTCCACGTCCACCCCTCCTCCGACGTCCTG
CCCGCCACCAGCTAGGCCCCCAGGCCTGGCCTTCCCCTCTCCTGCAGAGAACCAGAACCTGCCA
GGAGCACCGCGGAGTCCTTCTCCCGGAAGGCAGAGCTCCCTGAAATTTGGAGTCAGGGTGAAAA
CAACAGCCTTGTTTTTCCCATTTAGACAGGAGTCATCCTCAGCTTAAGCTGATCACAATAGCAA
AAGGCCGAATTGAATTGCGTGACGCCAACAGCCTTCCAATTTACAGGTTTTCTTTCCTCCCATG
TTGGCCTTTATTTACTCCTTCCTTGGAACCATCTCTGAATTCTGAATAGCTGACAACCCCATGT
TATCCATTCTGTTGCTTTTGTCTGGAAAACTCTACAGTGTTTGTGGGATGTCCCCAAAGGAAAG
CTATGTTCTAATTTTATCATTTCCATCTGTCTGGTTATGTCAAGTTAATTCAGAGAGAGAAAAG
ACACTGACCAACCCTGAGAGGCCCAATAGGGCAGAGATGGAGGCCTGCCTAGACCAAGAGGCAG
AGGGGGTAAGCAGAGCCTGGGAGGGGACAAAGACCCCCATTGGTTTGGAGACCCAGGAGAAGGA
TGTGGCACCTTGGGCTGAGAGAGACACTAGCCATTTTAAGGAGGGGAAAGAGGAAACTCGGGGT
ATGTGTTGGGGGCTCTGCCCCCACCTAGTTATCCAGCATCTGTGCAGGAGACATAGTAGAGGTG
GTCTTTGATCTGTGAGGTGACATTTCTCAATGTTTGGACAGGTTTGAACTGGGGACCCCTGTTG
GCTACTCGTTGACTCCTGATGGGGATGCTTGGGCCTCTTATGGGGAACTGGAGAACAGAGACCG
GGGAAATGGCAGAGTGGTCATTCTGGACCCACCTCTGAGTAGATAGAGGGGGCCCACTGCCTAG
GTCAGTGTGCCAAGCCCAGGATTCTGGCTGTTGCTTCTGGGCTTCCCCATCAACCCTGCCCAGA
GCCAGCCCCACCTACCCCTGAGAACGCAGGCCAGACACAGCTGTGCTCTCATCCATCCTGTCCT
GCTATAGCTCCTCCACCCCAGACTAAAGGTCTTGGGCTCCACGCAGCCATGATTTATGTTTTCA
GGGGACGCCCATCTGTCCCAAGCTTATCCTCTAATTATAGAAATACTTGGTGTCCTGATGCATT
TCCCGCTAGAGGCTGCTAGTAAGCATGTTTCAGCCCAAGGTCTTCTTCCTGCTTTGGTTAACCT
GATATGTTGCTTTTGGAAGGAGACTCTAGAGCAGGGAAAGCAAGTTCATGGTACAAAGGTATCG
GCTGTCCCTGTTTTCACCCCTGGCAGACATCGCTAATCGATTGCAGCACTCTCTATCTCACTGA
GTCTGGATAAGGTTTCAGAATCCAAATGCTTGAATTTGGCATTTAAAATGAAAACCTATATGCC
ATTCTCACTATGGGACCTGGAGGAGGGCTGGGCGTGGATGCAACCCCCAAAGGGAACCTGCTTC
TTTTCCCTTTCGAAGATGGTTCCAGCTGACTCAGGGCAAAGAGAAGGCACCCATTCAGAATGTG
ATCAGAGCAGCTTGGTTCAAAATTCACCCACCCTGCGAATAATGTGTGCCTGGCCCAGTGCTTG
GTGCTTATGCTAACAGGAGCAGCTTGGGTCTGATTGCTGATGTTTGGAGAGCTCTCATGTTTCC
TTTGATTTTTTTTGCTCCCAATGATCACAGTCCCAAGCACAGTCATGTGGTGAGTGGGTGGCTG
AGCCCTGCCCTGGGTCACCCAGTACCCACTCTGCCTTGAGCCTCCCCCACAGGGTCTGTTCCTT
ACGTGGATCACATGGTTGTAGCATGTTGCAGTTCAGACATGTCTCCACTAGCCTGTTAGAGCAG
CCTGGGAACGTACAGGCCATCAAGACTATTTATTTAAATACGAAACAAAAGGGGGGAAACACAT
CCACATGGAAAAAAAATTGTAAGCACTTTTTTGTAAAACCAATGTCTGTTTTGTTACATACCTT
TCATGTTGTGCTTTGTAAATGTCTTATTTGTGTAATAAATAAAGTTAATGCAAGTAGAAGTGCT
GGCACTTACATCCAGA

hide sequence

RefSeq Acc Id:

XM_021068384 ⟹ XP_020924043

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	1	262,297,557 - 262,322,606 (-)	NCBI

Sequence:

show sequence

AGGAGGGAGAGGAGGAGGAGGACTACGAGGAGCGAGAGGAGGAGGAGAAGGAGGGGGCGGGGGC
CTCTCCAAGTTTGTCGGGACCTTCTTCCGAGGCAGCTGCGGCGGCAGCCAGGGAGGCCAGGGCT
GCGCGCGGGCCGGGGGCAGGGGCTGGGGCCGGGCCCGGGGCGGCGGGGCCGGCACCTCGGCTCT
CCTGCTGCTCCTGCTTCAGCTTTTGCTCCCACTGCGGCCGTGGTCCCCCTCCGCGCGGCTCTTC
GTGCTGCGCGCCGGCTGAGCCCGCCGCTCCCCGGCCCATGTACTGGAAGCATGAGAACGCCGCC
CCGGCGCTGCCCGAGGGCTGCCGGCTGCCGGCCAAGGGCGGCCCCACCACCGAGCAGGCTCAAT
CTGACGCTGAGGCCCTGGCAGGCGCTCTGGACAAGGACGAGGGTCGGGCCTCTCCCTGTACGCC
CAGCACGCCATCTGTCTGTTCACCGCCTTCTGCCGCCTCCTCCGTGCCGTCCGCGGGCAAGAAC
ATCTGCTCCAGCTGCGGCCTCGAGATCCTGGACCGGTATCTGCTCAAGGTCAACAACCTCATCT
GGCACGTGCGGTGCCTCGAGTGCTCCGTGTGTCGCACGTCGCTGAGGCAGCAGAACAGCTGCTA
CATCAAGAACAAGGAAATCTTCTGCAAGATGGACTACTTCAGCCGGTTTGGGACCAAGTGCGCA
AGGTGTGGCCGACAGATCTACGCCAGCGACTGGGTTCGGCGGGCACGAGGCAACGCCTACCACT
TGGCCTGTTTCGCCTGCTTCTCGTGCAAGCGCCAGCTATCCACCGGCGAGGAGTTTGGCTTGGT
CGAGGAGAAGGTGCTGTGCCGCATCCACTACGACACCATGATTGAAAACCTCAAGAGGGCCGCC
GAGAACGGGAACGGCCTCACGCTGGAGGGGGCAGTGCCCTCGGAACAGGACAGTCAGCCCAAGC
CAGCCAAGCGCGCGCGGACGTCCTTCACCGCCGAACAGTTGCAGGTTATGCAGGCGCAGTTCGC
GCAGGACAACAACCCCGACGCGCAGACGCTGCAGAAGCTTGCGGACATGACGGGCCTCAGCCGA
AGGGTCATCCAGGTGTGGTTTCAAAACTGCCGGGCGCGTCATAAAAAGCACACGCCACAGCATC
CCGTGCCGCCCTCCGGGGCGCCGCCGTCCCGCCTCCCCTCTACCCTGTCCGACGACATCCACTA
CTCCCCGTTCAGCAGTCCCGAGCGGGCTCGCATGGTCACCCTGCACGGCTACATTGAGAGTCAG
GTACAGTGCGGGCAGGTGCACTGCCGGCTGCCTTACACCGCGCCCCCCGTCCACCTCAAAGCCG
ATATGGATGGGCCACTCTCCAACCGGGGTGAGAAGGTCATCCTTTTTCAGTACTAACGCTGCCA
GCGCTTCCGCATCTGTCCATGGGCGCCCCACAGCTGCCCCTCAGCCGCTGAAACCCGGAGTTCG
AGCCGCTGCCAGGGATCCACCCGCTCCACGTCCACCCCTCCTCCGACGTCCTGCCCGCCACCAG
CTAGGCCCCCAGGCCTGGCCTTCCCCTCTCCTGCAGAGAACCAGAACCTGCCAGGAGCACCGCG
GAGTCCTTCTCCCGGAAGGCAGAGCTCCCTGAAATTTGGAGTCAGGGTGAAAACAACAGCCTTG
TTTTTCCCATTTAGACAGGAGTCATCCTCAGCTTAAGCTGATCACAATAGCAAAAGGCCGAATT
GAATTGCGTGACGCCAACAGCCTTCCAATTTACAGGTTTTCTTTCCTCCCATGTTGGCCTTTAT
TTACTCCTTCCTTGGAACCATCTCTGAATTCTGAATAGCTGACAACCCCATGTTATCCATTCTG
TTGCTTTTGTCTGGAAAACTCTACAGTGTTTGTGGGATGTCCCCAAAGGAAAGCTATGTTCTAA
TTTTATCATTTCCATCTGTCTGGTTATGTCAAGTTAATTCAGAGAGAGAAAAGACACTGACCAA
CCCTGAGAGGCCCAATAGGGCAGAGATGGAGGCCTGCCTAGACCAAGAGGCAGAGGGGGTAAGC
AGAGCCTGGGAGGGGACAAAGACCCCCATTGGTTTGGAGACCCAGGAGAAGGATGTGGCACCTT
GGGCTGAGAGAGACACTAGCCATTTTAAGGAGGGGAAAGAGGAAACTCGGGGTATGTGTTGGGG
GCTCTGCCCCCACCTAGTTATCCAGCATCTGTGCAGGAGACATAGTAGAGGTGGTCTTTGATCT
GTGAGGTGACATTTCTCAATGTTTGGACAGGTTTGAACTGGGGACCCCTGTTGGCTACTCGTTG
ACTCCTGATGGGGATGCTTGGGCCTCTTATGGGGAACTGGAGAACAGAGACCGGGGAAATGGCA
GAGTGGTCATTCTGGACCCACCTCTGAGTAGATAGAGGGGGCCCACTGCCTAGGTCAGTGTGCC
AAGCCCAGGATTCTGGCTGTTGCTTCTGGGCTTCCCCATCAACCCTGCCCAGAGCCAGCCCCAC
CTACCCCTGAGAACGCAGGCCAGACACAGCTGTGCTCTCATCCATCCTGTCCTGCTATAGCTCC
TCCACCCCAGACTAAAGGTCTTGGGCTCCACGCAGCCATGATTTATGTTTTCAGGGGACGCCCA
TCTGTCCCAAGCTTATCCTCTAATTATAGAAATACTTGGTGTCCTGATGCATTTCCCGCTAGAG
GCTGCTAGTAAGCATGTTTCAGCCCAAGGTCTTCTTCCTGCTTTGGTTAACCTGATATGTTGCT
TTTGGAAGGAGACTCTAGAGCAGGGAAAGCAAGTTCATGGTACAAAGGTATCGGCTGTCCCTGT
TTTCACCCCTGGCAGACATCGCTAATCGATTGCAGCACTCTCTATCTCACTGAGTCTGGATAAG
GTTTCAGAATCCAAATGCTTGAATTTGGCATTTAAAATGAAAACCTATATGCCATTCTCACTAT
GGGACCTGGAGGAGGGCTGGGCGTGGATGCAACCCCCAAAGGGAACCTGCTTCTTTTCCCTTTC
GAAGATGGTTCCAGCTGACTCAGGGCAAAGAGAAGGCACCCATTCAGAATGTGATCAGAGCAGC
TTGGTTCAAAATTCACCCACCCTGCGAATAATGTGTGCCTGGCCCAGTGCTTGGTGCTTATGCT
AACAGGAGCAGCTTGGGTCTGATTGCTGATGTTTGGAGAGCTCTCATGTTTCCTTTGATTTTTT
TTGCTCCCAATGATCACAGTCCCAAGCACAGTCATGTGGTGAGTGGGTGGCTGAGCCCTGCCCT
GGGTCACCCAGTACCCACTCTGCCTTGAGCCTCCCCCACAGGGTCTGTTCCTTACGTGGATCAC
ATGGTTGTAGCATGTTGCAGTTCAGACATGTCTCCACTAGCCTGTTAGAGCAGCCTGGGAACGT
ACAGGCCATCAAGACTATTTATTTAAATACGAAACAAAAGGGGGGAAACACATCCACATGGAAA
AAAAATTGTAAGCACTTTTTTGTAAAACCAATGTCTGTTTTGTTACATACCTTTCATGTTGTGC
TTTGTAAATGTCTTATTTGTGTAATAAATAAAGTTAATGCAAGTAGAAGTGCTGGCACTTACAT
CCAGA

hide sequence

RefSeq Acc Id:

XM_021068392 ⟹ XP_020924051

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	1	262,297,557 - 262,320,866 (-)	NCBI

Sequence:

show sequence

TTTTCTGGCCGGGAATGTGAGCTTTGACCGCACCTTGTACCTAGGACGTGCGTGCTAAAAGTTG
GAGCCGTTCTTTCCTCTCCAGCTCAATCTGACGCTGAGGCCCTGGCAGGCGCTCTGGACAAGGA
CGAGGGTCGGGCCTCTCCCTGTACGCCCAGCACGCCATCTGTCTGTTCACCGCCTTCTGCCGCC
TCCTCCGTGCCGTCCGCGGGCAAGAACATCTGCTCCAGCTGCGGCCTCGAGATCCTGGACCGGT
ATCTGCTCAAGGTCAACAACCTCATCTGGCACGTGCGGTGCCTCGAGTGCTCCGTGTGTCGCAC
GTCGCTGAGGCAGCAGAACAGCTGCTACATCAAGAACAAGGAAATCTTCTGCAAGATGGACTAC
TTCAGCCGGTTTGGGACCAAGTGCGCAAGGTGTGGCCGACAGATCTACGCCAGCGACTGGGTTC
GGCGGGCACGAGGCAACGCCTACCACTTGGCCTGTTTCGCCTGCTTCTCGTGCAAGCGCCAGCT
ATCCACCGGCGAGGAGTTTGGCTTGGTCGAGGAGAAGGTGCTGTGCCGCATCCACTACGACACC
ATGATTGAAAACCTCAAGAGGGCCGCCGAGAACGGGAACGGCCTCACGCTGGAGGGGGCAGTGC
CCTCGGAACAGGACAGTCAGCCCAAGCCAGCCAAGCGCGCGCGGACGTCCTTCACCGCCGAACA
GTTGCAGGTTATGCAGGCGCAGTTCGCGCAGGACAACAACCCCGACGCGCAGACGCTGCAGAAG
CTTGCGGACATGACGGGCCTCAGCCGAAGGGTCATCCAGGTGTGGTTTCAAAACTGCCGGGCGC
GTCATAAAAAGCACACGCCACAGCATCCCGTGCCGCCCTCCGGGGCGCCGCCGTCCCGCCTCCC
CTCTACCCTGTCCGACGACATCCACTACTCCCCGTTCAGCAGTCCCGAGCGGGCTCGCATGGTC
ACCCTGCACGGCTACATTGAGAGTCAGGTACAGTGCGGGCAGGTGCACTGCCGGCTGCCTTACA
CCGCGCCCCCCGTCCACCTCAAAGCCGATATGGATGGGCCACTCTCCAACCGGGGTGAGAAGGT
CATCCTTTTTCAGTACTAACGCTGCCAGCGCTTCCGCATCTGTCCATGGGCGCCCCACAGCTGC
CCCTCAGCCGCTGAAACCCGGAGTTCGAGCCGCTGCCAGGGATCCACCCGCTCCACGTCCACCC
CTCCTCCGACGTCCTGCCCGCCACCAGCTAGGCCCCCAGGCCTGGCCTTCCCCTCTCCTGCAGA
GAACCAGAACCTGCCAGGAGCACCGCGGAGTCCTTCTCCCGGAAGGCAGAGCTCCCTGAAATTT
GGAGTCAGGGTGAAAACAACAGCCTTGTTTTTCCCATTTAGACAGGAGTCATCCTCAGCTTAAG
CTGATCACAATAGCAAAAGGCCGAATTGAATTGCGTGACGCCAACAGCCTTCCAATTTACAGGT
TTTCTTTCCTCCCATGTTGGCCTTTATTTACTCCTTCCTTGGAACCATCTCTGAATTCTGAATA
GCTGACAACCCCATGTTATCCATTCTGTTGCTTTTGTCTGGAAAACTCTACAGTGTTTGTGGGA
TGTCCCCAAAGGAAAGCTATGTTCTAATTTTATCATTTCCATCTGTCTGGTTATGTCAAGTTAA
TTCAGAGAGAGAAAAGACACTGACCAACCCTGAGAGGCCCAATAGGGCAGAGATGGAGGCCTGC
CTAGACCAAGAGGCAGAGGGGGTAAGCAGAGCCTGGGAGGGGACAAAGACCCCCATTGGTTTGG
AGACCCAGGAGAAGGATGTGGCACCTTGGGCTGAGAGAGACACTAGCCATTTTAAGGAGGGGAA
AGAGGAAACTCGGGGTATGTGTTGGGGGCTCTGCCCCCACCTAGTTATCCAGCATCTGTGCAGG
AGACATAGTAGAGGTGGTCTTTGATCTGTGAGGTGACATTTCTCAATGTTTGGACAGGTTTGAA
CTGGGGACCCCTGTTGGCTACTCGTTGACTCCTGATGGGGATGCTTGGGCCTCTTATGGGGAAC
TGGAGAACAGAGACCGGGGAAATGGCAGAGTGGTCATTCTGGACCCACCTCTGAGTAGATAGAG
GGGGCCCACTGCCTAGGTCAGTGTGCCAAGCCCAGGATTCTGGCTGTTGCTTCTGGGCTTCCCC
ATCAACCCTGCCCAGAGCCAGCCCCACCTACCCCTGAGAACGCAGGCCAGACACAGCTGTGCTC
TCATCCATCCTGTCCTGCTATAGCTCCTCCACCCCAGACTAAAGGTCTTGGGCTCCACGCAGCC
ATGATTTATGTTTTCAGGGGACGCCCATCTGTCCCAAGCTTATCCTCTAATTATAGAAATACTT
GGTGTCCTGATGCATTTCCCGCTAGAGGCTGCTAGTAAGCATGTTTCAGCCCAAGGTCTTCTTC
CTGCTTTGGTTAACCTGATATGTTGCTTTTGGAAGGAGACTCTAGAGCAGGGAAAGCAAGTTCA
TGGTACAAAGGTATCGGCTGTCCCTGTTTTCACCCCTGGCAGACATCGCTAATCGATTGCAGCA
CTCTCTATCTCACTGAGTCTGGATAAGGTTTCAGAATCCAAATGCTTGAATTTGGCATTTAAAA
TGAAAACCTATATGCCATTCTCACTATGGGACCTGGAGGAGGGCTGGGCGTGGATGCAACCCCC
AAAGGGAACCTGCTTCTTTTCCCTTTCGAAGATGGTTCCAGCTGACTCAGGGCAAAGAGAAGGC
ACCCATTCAGAATGTGATCAGAGCAGCTTGGTTCAAAATTCACCCACCCTGCGAATAATGTGTG
CCTGGCCCAGTGCTTGGTGCTTATGCTAACAGGAGCAGCTTGGGTCTGATTGCTGATGTTTGGA
GAGCTCTCATGTTTCCTTTGATTTTTTTTGCTCCCAATGATCACAGTCCCAAGCACAGTCATGT
GGTGAGTGGGTGGCTGAGCCCTGCCCTGGGTCACCCAGTACCCACTCTGCCTTGAGCCTCCCCC
ACAGGGTCTGTTCCTTACGTGGATCACATGGTTGTAGCATGTTGCAGTTCAGACATGTCTCCAC
TAGCCTGTTAGAGCAGCCTGGGAACGTACAGGCCATCAAGACTATTTATTTAAATACGAAACAA
AAGGGGGGAAACACATCCACATGGAAAAAAAATTGTAAGCACTTTTTTGTAAAACCAATGTCTG
TTTTGTTACATACCTTTCATGTTGTGCTTTGTAAATGTCTTATTTGTGTAATAAATAAAGTTAA
TGCAAGTAGAAGTGCTGGCACTTACATCCAGA

hide sequence

Protein Sequences


Protein RefSeqs	XP_020924026	(Get FASTA)	NCBI Sequence Viewer
	XP_020924035	(Get FASTA)	NCBI Sequence Viewer
	XP_020924043	(Get FASTA)	NCBI Sequence Viewer
	XP_020924051	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSSCP00000005926.4
	ENSSSCP00000062351.1
	ENSSSCP00000062750
	ENSSSCP00000062750.1
	ENSSSCP00000064116.2
	ENSSSCP00000072147.1
	ENSSSCP00000072995.1
	ENSSSCP00015032682.1
	ENSSSCP00025006987.1
	ENSSSCP00025007008.1
	ENSSSCP00025007021.1
	ENSSSCP00025007031.1
	ENSSSCP00025007046.1
	ENSSSCP00025007072.1
	ENSSSCP00030029179.1
	ENSSSCP00030029211.1
	ENSSSCP00030029239.1
	ENSSSCP00030029254.1
	ENSSSCP00030029269.1
	ENSSSCP00030029293.1
	ENSSSCP00035014429.1
	ENSSSCP00035014432.1
	ENSSSCP00035014434.1
	ENSSSCP00035014437.1
	ENSSSCP00040033237.1
	ENSSSCP00040033328.1
	ENSSSCP00040033435.1
	ENSSSCP00040033482.1
	ENSSSCP00040033572.1
	ENSSSCP00040033645.1
	ENSSSCP00045045907.1
	ENSSSCP00045045945.1
	ENSSSCP00045045974.1
	ENSSSCP00045045989.1
	ENSSSCP00045046016.1
	ENSSSCP00045046054.1
	ENSSSCP00050024093.1
	ENSSSCP00050024096.1
	ENSSSCP00050024099.1
	ENSSSCP00050024100.1
	ENSSSCP00050024101.1
	ENSSSCP00050024103.1
	ENSSSCP00055023051.1
	ENSSSCP00055023174.1
	ENSSSCP00055023259.1
	ENSSSCP00055023309.1
	ENSSSCP00055023377.1
	ENSSSCP00055023476.1
	ENSSSCP00060002081.1
	ENSSSCP00060002082.1
	ENSSSCP00060002084.1
	ENSSSCP00060002085.1
	ENSSSCP00060002086.1
	ENSSSCP00060002088.1
	ENSSSCP00065000307.1
	ENSSSCP00065000312.1
	ENSSSCP00065000317.1
	ENSSSCP00065000319.1
	ENSSSCP00065000323.1
	ENSSSCP00070029684.1
	ENSSSCP00070029689.1
	ENSSSCP00070029693.1

RefSeq Acc Id:

XP_020924035 ⟸ XM_021068376

- Peptide Label:

isoform X2

- Sequence:

show sequence

MTHLEPSGAPAAGRPPPQLEGEEDEEEGEEEEDYEEREEEEKEGAGASPSLSGPSSEAAAAAAR
EARAARGPGAGAGAGPGAAGPAPRLSCCSCFSFCSHCGRGPPPRGSSCCAPAEPAAPRPMYWKH
ENAAPALPEGCRLPAKGGPTTEQVMAQPGSGCKATTRCLEGTAPPAMAQSDAEALAGALDKDEG
RASPCTPSTPSVCSPPSAASSVPSAGKNICSSCGLEILDRYLLKVNNLIWHVRCLECSVCRTSL
RQQNSCYIKNKEIFCKMDYFSRFGTKCARCGRQIYASDWVRRARGNAYHLACFACFSCKRQLST
GEEFGLVEEKVLCRIHYDTMIENLKRAAENGNGLTLEGAVPSEQDSQPKPAKRARTSFTAEQLQ
VMQAQFAQDNNPDAQTLQKLADMTGLSRRVIQVWFQNCRARHKKHTPQHPVPPSGAPPSRLPST
LSDDIHYSPFSSPERARMVTLHGYIESHPFSVLTLPALPHLSMGAPQLPLSR

hide sequence

RefSeq Acc Id:

XP_020924026 ⟸ XM_021068367

- Peptide Label:

isoform X1

- Sequence:

show sequence

MTHLEPSGAPAAGRPPPQLEGEEDEEEGEEEEDYEEREEEEKEGAGASPSLSGPSSEAAAAAAR
EARAARGPGAGAGAGPGAAGPAPRLSCCSCFSFCSHCGRGPPPRGSSCCAPAEPAAPRPMYWKH
ENAAPALPEGCRLPAKGGPTTEQVMAQPGSGCKATTRCLEGTAPPAMAQSDAEALAGALDKDEG
RASPCTPSTPSVCSPPSAASSVPSAGKNICSSCGLEILDRYLLKVNNLIWHVRCLECSVCRTSL
RQQNSCYIKNKEIFCKMDYFSRFGTKCARCGRQIYASDWVRRARGNAYHLACFACFSCKRQLST
GEEFGLVEEKVLCRIHYDTMIENLKRAAENGNGLTLEGAVPSEQDSQPKPAKRARTSFTAEQLQ
VMQAQFAQDNNPDAQTLQKLADMTGLSRRVIQVWFQNCRARHKKHTPQHPVPPSGAPPSRLPST
LSDDIHYSPFSSPERARMVTLHGYIESQVQCGQVHCRLPYTAPPVHLKADMDGPLSNRGEKVIL
FQY

hide sequence

RefSeq Acc Id:	XP_020924043 ⟸ XM_021068384
- Peptide Label:	isoform X3
- UniProtKB:	A0A5G2QX35 (UniProtKB/TrEMBL), A0A8D0Z909 (UniProtKB/TrEMBL)
- Sequence:	show sequence MYWKHENAAPALPEGCRLPAKGGPTTEQAQSDAEALAGALDKDEGRASPCTPSTPSVCSPPSAA SSVPSAGKNICSSCGLEILDRYLLKVNNLIWHVRCLECSVCRTSLRQQNSCYIKNKEIFCKMDY FSRFGTKCARCGRQIYASDWVRRARGNAYHLACFACFSCKRQLSTGEEFGLVEEKVLCRIHYDT MIENLKRAAENGNGLTLEGAVPSEQDSQPKPAKRARTSFTAEQLQVMQAQFAQDNNPDAQTLQK LADMTGLSRRVIQVWFQNCRARHKKHTPQHPVPPSGAPPSRLPSTLSDDIHYSPFSSPERARMV TLHGYIESQVQCGQVHCRLPYTAPPVHLKADMDGPLSNRGEKVILFQY hide sequence

RefSeq Acc Id:

XP_020924051 ⟸ XM_021068392

- Peptide Label:

isoform X4

- Sequence:

show sequence

MDYFSRFGTKCARCGRQIYASDWVRRARGNAYHLACFACFSCKRQLSTGEEFGLVEEKVLCRIH
YDTMIENLKRAAENGNGLTLEGAVPSEQDSQPKPAKRARTSFTAEQLQVMQAQFAQDNNPDAQT
LQKLADMTGLSRRVIQVWFQNCRARHKKHTPQHPVPPSGAPPSRLPSTLSDDIHYSPFSSPERA
RMVTLHGYIESQVQCGQVHCRLPYTAPPVHLKADMDGPLSNRGEKVILFQY

hide sequence

Ensembl Acc Id:

ENSSSCP00000062750 ⟸ ENSSSCT00000078868

Ensembl Acc Id:

ENSSSCP00000064116 ⟸ ENSSSCT00000080673

Ensembl Acc Id:

ENSSSCP00000005926 ⟸ ENSSSCT00000006081

Ensembl Acc Id:

ENSSSCP00000072147 ⟸ ENSSSCT00000079228

Ensembl Acc Id:

ENSSSCP00000072995 ⟸ ENSSSCT00000076807

Ensembl Acc Id:

ENSSSCP00000062351 ⟸ ENSSSCT00000073213

Protein Domains

Homeobox LIM zinc-binding

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSSCG00000005530	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
	ENSSSCG00015059882	UniProtKB/TrEMBL
	ENSSSCG00025013173	UniProtKB/TrEMBL
	ENSSSCG00030045689	UniProtKB/TrEMBL
	ENSSSCG00035027410	UniProtKB/TrEMBL
	ENSSSCG00040056876	UniProtKB/TrEMBL
	ENSSSCG00045037600	UniProtKB/TrEMBL
	ENSSSCG00050041685	UniProtKB/TrEMBL
	ENSSSCG00055014677	UniProtKB/TrEMBL
	ENSSSCG00060004925	UniProtKB/TrEMBL
	ENSSSCG00065000911	UniProtKB/TrEMBL
	ENSSSCG00070017995	UniProtKB/TrEMBL
Ensembl Transcript	ENSSSCT00000006081.5	UniProtKB/TrEMBL
	ENSSSCT00000073213.2	UniProtKB/TrEMBL
	ENSSSCT00000076807.2	UniProtKB/TrEMBL
	ENSSSCT00000078868	ENTREZGENE
	ENSSSCT00000078868.2	UniProtKB/TrEMBL
	ENSSSCT00000079228.2	UniProtKB/TrEMBL
	ENSSSCT00000080673.2	UniProtKB/TrEMBL
	ENSSSCT00015080816.1	UniProtKB/TrEMBL
	ENSSSCT00025017461.1	UniProtKB/TrEMBL
	ENSSSCT00025017523.1	UniProtKB/TrEMBL
	ENSSSCT00025017559.1	UniProtKB/TrEMBL
	ENSSSCT00025017585.1	UniProtKB/TrEMBL
	ENSSSCT00025017628.1	UniProtKB/TrEMBL
	ENSSSCT00025017690.1	UniProtKB/TrEMBL
	ENSSSCT00030063739.1	UniProtKB/TrEMBL
	ENSSSCT00030063799.1	UniProtKB/TrEMBL
	ENSSSCT00030063860.1	UniProtKB/TrEMBL
	ENSSSCT00030063888.1	UniProtKB/TrEMBL
	ENSSSCT00030063924.1	UniProtKB/TrEMBL
	ENSSSCT00030063992.1	UniProtKB/TrEMBL
	ENSSSCT00035036284.1	UniProtKB/TrEMBL
	ENSSSCT00035036293.1	UniProtKB/TrEMBL
	ENSSSCT00035036296.1	UniProtKB/TrEMBL
	ENSSSCT00035036302.1	UniProtKB/TrEMBL
	ENSSSCT00040077316.1	UniProtKB/TrEMBL
	ENSSSCT00040077474.1	UniProtKB/TrEMBL
	ENSSSCT00040077682.1	UniProtKB/TrEMBL
	ENSSSCT00040077778.1	UniProtKB/TrEMBL
	ENSSSCT00040077956.1	UniProtKB/TrEMBL
	ENSSSCT00040078088.1	UniProtKB/TrEMBL
	ENSSSCT00045064925.1	UniProtKB/TrEMBL
	ENSSSCT00045064970.1	UniProtKB/TrEMBL
	ENSSSCT00045065002.1	UniProtKB/TrEMBL
	ENSSSCT00045065018.1	UniProtKB/TrEMBL
	ENSSSCT00045065050.1	UniProtKB/TrEMBL
	ENSSSCT00045065094.1	UniProtKB/TrEMBL
	ENSSSCT00050056573.1	UniProtKB/TrEMBL
	ENSSSCT00050056579.1	UniProtKB/TrEMBL
	ENSSSCT00050056583.1	UniProtKB/TrEMBL
	ENSSSCT00050056584.1	UniProtKB/TrEMBL
	ENSSSCT00050056587.1	UniProtKB/TrEMBL
	ENSSSCT00050056593.1	UniProtKB/TrEMBL
	ENSSSCT00055028940.1	UniProtKB/TrEMBL
	ENSSSCT00055029107.1	UniProtKB/TrEMBL
	ENSSSCT00055029225.1	UniProtKB/TrEMBL
	ENSSSCT00055029286.1	UniProtKB/TrEMBL
	ENSSSCT00055029371.1	UniProtKB/TrEMBL
	ENSSSCT00055029482.1	UniProtKB/TrEMBL
	ENSSSCT00060006129.1	UniProtKB/TrEMBL
	ENSSSCT00060006136.1	UniProtKB/TrEMBL
	ENSSSCT00060006139.1	UniProtKB/TrEMBL
	ENSSSCT00060006142.1	UniProtKB/TrEMBL
	ENSSSCT00060006144.1	UniProtKB/TrEMBL
	ENSSSCT00060006150.1	UniProtKB/TrEMBL
	ENSSSCT00065001087.1	UniProtKB/TrEMBL
	ENSSSCT00065001101.1	UniProtKB/TrEMBL
	ENSSSCT00065001110.1	UniProtKB/TrEMBL
	ENSSSCT00065001115.1	UniProtKB/TrEMBL
	ENSSSCT00065001122.1	UniProtKB/TrEMBL
	ENSSSCT00070035522.1	UniProtKB/TrEMBL
	ENSSSCT00070035527.1	UniProtKB/TrEMBL
	ENSSSCT00070035531.1	UniProtKB/TrEMBL
Gene3D-CATH	Cysteine Rich Protein	UniProtKB/TrEMBL
	Homeodomain-like	UniProtKB/TrEMBL
InterPro	Homeobox-like_sf	UniProtKB/TrEMBL
	Homeobox_CS	UniProtKB/TrEMBL
	Homeobox_dom	UniProtKB/TrEMBL
	LIM_Homeobox_TF	UniProtKB/TrEMBL
	Znf_LIM	UniProtKB/TrEMBL
NCBI Gene	LHX6	ENTREZGENE
PANTHER	LIM/HOMEOBOX PROTEIN LHX	UniProtKB/TrEMBL
	LIM/HOMEOBOX PROTEIN LHX6	UniProtKB/TrEMBL
Pfam	Homeodomain	UniProtKB/TrEMBL
	LIM	UniProtKB/TrEMBL
PROSITE	HOMEOBOX_1	UniProtKB/TrEMBL
	HOMEOBOX_2	UniProtKB/TrEMBL
	LIM_DOMAIN_1	UniProtKB/TrEMBL
	LIM_DOMAIN_2	UniProtKB/TrEMBL
SMART	HOX	UniProtKB/TrEMBL
	LIM	UniProtKB/TrEMBL
Superfamily-SCOP	Glucocorticoid receptor-like (DNA-binding domain)	UniProtKB/TrEMBL
	SSF46689	UniProtKB/TrEMBL
UniProt	A0A4X1UKC1_PIG	UniProtKB/TrEMBL
	A0A4X1UKC6_PIG	UniProtKB/TrEMBL
	A0A4X1UM24_PIG	UniProtKB/TrEMBL
	A0A5G2QCN8_PIG	UniProtKB/TrEMBL
	A0A5G2QX35	ENTREZGENE, UniProtKB/TrEMBL
	A0A5G2R0U4_PIG	UniProtKB/TrEMBL
	A0A5G2R7E1_PIG	UniProtKB/TrEMBL
	A0A5G2RCX4_PIG	UniProtKB/TrEMBL
	A0A8D0X0T7_PIG	UniProtKB/TrEMBL
	A0A8D0X1H8_PIG	UniProtKB/TrEMBL
	A0A8D0X4P3_PIG	UniProtKB/TrEMBL
	A0A8D0Z909	ENTREZGENE, UniProtKB/TrEMBL
	A0A8D1JBY4_PIG	UniProtKB/TrEMBL
	A0A8D1X8F7_PIG	UniProtKB/TrEMBL
	F1SLQ9_PIG	UniProtKB/TrEMBL
VGNC ID	VGNC:89716	ENTREZGENE

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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