JADE2 (Sus scrofa - pig) |
Pig Assembly | Chr | Position (strand) | Source | Genome Browsers |
---|
JBrowse | NCBI | UCSC | Ensembl |
---|
Sscrofa11.1 Ensembl | 2 | 136,788,372 - 136,832,001 (+) | Ensembl | Sscrofa11.1 | | susScr11 | Sscrofa11.1 | Sscrofa11.1 | 2 | 136,686,056 - 136,832,004 (+) | NCBI | Sscrofa11.1 | Sscrofa11.1 | susScr11 | Sscrofa11.1 | Sscrofa10.2 | 2 | 142,285,898 - 142,446,232 (+) | NCBI | Sscrofa10.2 | Sscrofa10.2 | susScr3 | |
|
JADE2 (Homo sapiens - human) |
Human Assembly | Chr | Position (strand) | Source | Genome Browsers |
---|
JBrowse | NCBI | UCSC | Ensembl |
---|
GRCh38 | 5 | 134,523,952 - 134,583,227 (+) | NCBI | GRCh38 | GRCh38 | hg38 | GRCh38 | GRCh38.p14 Ensembl | 5 | 134,524,312 - 134,583,230 (+) | Ensembl | GRCh38 | | hg38 | GRCh38 | GRCh37 | 5 | 133,860,006 - 133,918,917 (+) | NCBI | GRCh37 | GRCh37 | hg19 | GRCh37 | Build 36 | 5 | 133,889,697 - 133,946,817 (+) | NCBI | NCBI36 | Build 36 | hg18 | NCBI36 | Build 34 | 5 | 133,889,696 - 133,946,817 | NCBI | | | | | Celera | 5 | 129,987,691 - 130,044,831 (+) | NCBI | | Celera | | | Cytogenetic Map | 5 | q31.1 | NCBI | | | | | HuRef | 5 | 129,048,205 - 129,105,144 (+) | NCBI | | HuRef | | | CHM1_1 | 5 | 133,294,423 - 133,351,557 (+) | NCBI | | CHM1_1 | | | T2T-CHM13v2.0 | 5 | 135,049,572 - 135,108,849 (+) | NCBI | | T2T-CHM13v2.0 | | |
|
Jade2 (Mus musculus - house mouse) |
Mouse Assembly | Chr | Position (strand) | Source | Genome Browsers |
---|
JBrowse | NCBI | UCSC | Ensembl |
---|
GRCm39 | 11 | 51,704,278 - 51,749,835 (-) | NCBI | GRCm39 | GRCm39 | mm39 | | GRCm39 Ensembl | 11 | 51,704,282 - 51,748,480 (-) | Ensembl | | GRCm39 Ensembl | | | GRCm38 | 11 | 51,813,448 - 51,859,011 (-) | NCBI | GRCm38 | GRCm38 | mm10 | GRCm38 | GRCm38.p6 Ensembl | 11 | 51,813,455 - 51,857,653 (-) | Ensembl | GRCm38 | | mm10 | GRCm38 | MGSCv37 | 11 | 51,626,958 - 51,670,983 (-) | NCBI | GRCm37 | MGSCv37 | mm9 | NCBIm37 | MGSCv36 | 11 | 51,656,879 - 51,700,904 (-) | NCBI | | MGSCv36 | mm8 | | Celera | 11 | 56,380,578 - 56,416,174 (-) | NCBI | | Celera | | | Cytogenetic Map | 11 | B1.3 | NCBI | | | | | cM Map | 11 | 31.5 | NCBI | | | | |
|
Jade2 (Rattus norvegicus - Norway rat) |
Rat Assembly | Chr | Position (strand) | Source | Genome Browsers |
---|
JBrowse | NCBI | UCSC | Ensembl |
---|
GRCr8 | 10 | 36,576,187 - 36,625,129 (-) | NCBI | | GRCr8 | | | mRatBN7.2 | 10 | 36,075,239 - 36,124,210 (-) | NCBI | mRatBN7.2 | mRatBN7.2 | | | mRatBN7.2 Ensembl | 10 | 36,078,917 - 36,116,984 (-) | Ensembl | | mRatBN7.2 Ensembl | | | UTH_Rnor_SHR_Utx | 10 | 40,773,970 - 40,817,631 (-) | NCBI | Rnor_SHR | UTH_Rnor_SHR_Utx | | | UTH_Rnor_SHRSP_BbbUtx_1.0 | 10 | 40,263,950 - 40,307,612 (-) | NCBI | Rnor_SHRSP | UTH_Rnor_SHRSP_BbbUtx_1.0 | | | UTH_Rnor_WKY_Bbb_1.0 | 10 | 35,767,677 - 35,811,341 (-) | NCBI | Rnor_WKY | UTH_Rnor_WKY_Bbb_1.0 | | | Rnor_6.0 | 10 | 37,269,132 - 37,315,638 (-) | NCBI | Rnor6.0 | Rnor_6.0 | rn6 | Rnor6.0 | Rnor_6.0 Ensembl | 10 | 37,270,183 - 37,311,625 (-) | Ensembl | Rnor6.0 | | rn6 | Rnor6.0 | Rnor_5.0 | 10 | 37,042,215 - 37,089,638 (-) | NCBI | Rnor5.0 | Rnor_5.0 | rn5 | Rnor5.0 | RGSC_v3.4 | 10 | 37,338,457 - 37,379,931 (-) | NCBI | RGSC3.4 | RGSC_v3.4 | rn4 | RGSC3.4 | RGSC_v3.1 | 10 | 37,344,531 - 37,389,056 (-) | NCBI | | | | | Celera | 10 | 35,433,709 - 35,474,835 (-) | NCBI | | Celera | | | Cytogenetic Map | 10 | q22 | NCBI | | | | |
|
Jade2 (Chinchilla lanigera - long-tailed chinchilla) |
Chinchilla Assembly | Chr | Position (strand) | Source | Genome Browsers |
---|
JBrowse | NCBI | UCSC | Ensembl |
---|
ChiLan1.0 Ensembl | NW_004955408 | 5,687,544 - 5,723,122 (+) | Ensembl | ChiLan1.0 | | | | ChiLan1.0 | NW_004955408 | 5,676,590 - 5,722,726 (+) | NCBI | ChiLan1.0 | ChiLan1.0 | | |
|
JADE2 (Pan paniscus - bonobo/pygmy chimpanzee) |
Bonobo Assembly | Chr | Position (strand) | Source | Genome Browsers |
---|
JBrowse | NCBI | UCSC | Ensembl |
---|
NHGRI_mPanPan1-v2 | 4 | 129,824,142 - 129,881,507 (+) | NCBI | | NHGRI_mPanPan1-v2 | | | NHGRI_mPanPan1 | 5 | 127,963,704 - 128,021,068 (+) | NCBI | | NHGRI_mPanPan1 | | | Mhudiblu_PPA_v0 | 5 | 129,929,127 - 129,986,367 (+) | NCBI | Mhudiblu_PPA_v0 | Mhudiblu_PPA_v0 | panPan3 | | PanPan1.1 | 5 | 136,076,613 - 136,133,837 (+) | NCBI | panpan1.1 | PanPan1.1 | panPan2 | | PanPan1.1 Ensembl | 5 | 136,087,999 - 136,129,929 (+) | Ensembl | panpan1.1 | | panPan2 | |
|
JADE2 (Canis lupus familiaris - dog) |
Dog Assembly | Chr | Position (strand) | Source | Genome Browsers |
---|
JBrowse | NCBI | UCSC | Ensembl |
---|
CanFam3.1 | 11 | 22,646,487 - 22,698,436 (+) | NCBI | CanFam3.1 | CanFam3.1 | canFam3 | CanFam3.1 | CanFam3.1 Ensembl | 11 | 22,648,221 - 22,698,448 (+) | Ensembl | CanFam3.1 | | canFam3 | CanFam3.1 | Dog10K_Boxer_Tasha | 11 | 21,391,897 - 21,443,605 (+) | NCBI | | Dog10K_Boxer_Tasha | | | ROS_Cfam_1.0 | 11 | 23,448,186 - 23,499,936 (+) | NCBI | | ROS_Cfam_1.0 | | | ROS_Cfam_1.0 Ensembl | 11 | 23,449,501 - 23,499,907 (+) | Ensembl | | ROS_Cfam_1.0 Ensembl | | | UMICH_Zoey_3.1 | 11 | 22,147,768 - 22,199,512 (+) | NCBI | | UMICH_Zoey_3.1 | | | UNSW_CanFamBas_1.0 | 11 | 22,013,922 - 22,065,838 (+) | NCBI | | UNSW_CanFamBas_1.0 | | | UU_Cfam_GSD_1.0 | 11 | 22,655,998 - 22,707,942 (+) | NCBI | | UU_Cfam_GSD_1.0 | | |
|
Jade2 (Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
|
JADE2 (Chlorocebus sabaeus - green monkey) |
Green Monkey Assembly | Chr | Position (strand) | Source | Genome Browsers |
---|
JBrowse | NCBI | UCSC | Ensembl |
---|
ChlSab1.1 | 23 | 37,329,090 - 37,385,910 (+) | NCBI | ChlSab1.1 | ChlSab1.1 | chlSab2 | | ChlSab1.1 Ensembl | 23 | 37,330,498 - 37,386,035 (+) | Ensembl | ChlSab1.1 | ChlSab1.1 Ensembl | chlSab2 | | Vero_WHO_p1.0 | NW_023666034 | 40,546,434 - 40,603,456 (-) | NCBI | Vero_WHO_p1.0 | Vero_WHO_p1.0 | | |
|
Jade2 (Heterocephalus glaber - naked mole-rat) |
|