TERF1 (telomeric repeat binding factor 1) - Rat Genome Database

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Gene: TERF1 (telomeric repeat binding factor 1) Sus scrofa
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Symbol: TERF1
Name: telomeric repeat binding factor 1
RGD ID: 14000516
Description: ENCODES a protein that exhibits identical protein binding (ortholog); protein C-terminus binding (ortholog); telomeric DNA binding (ortholog); INVOLVED IN meiotic telomere clustering (ortholog); response to drug (ortholog); telomeric loop formation (ortholog); ASSOCIATED WITH breast cancer (ortholog); squamous cell carcinoma (ortholog); stomach cancer (ortholog); FOUND IN nucleolus (ortholog); nucleus (ortholog); spindle (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: telomeric repeat-binding factor 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl462,796,999 - 62,831,422 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1462,797,244 - 62,831,459 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2468,341,702 - 68,375,863 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References
Additional References at PubMed
PMID:20865782  


Genomics

Comparative Map Data
TERF1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl462,796,999 - 62,831,422 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1462,797,244 - 62,831,459 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2468,341,702 - 68,375,863 (-)NCBISscrofa10.2Sscrofa10.2susScr3
TERF1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl873,008,856 - 73,048,123 (+)EnsemblGRCh38hg38GRCh38
GRCh38873,008,856 - 73,048,123 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh37873,921,099 - 73,960,358 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36874,083,661 - 74,122,281 (+)NCBINCBI36hg18NCBI36
Build 34874,083,662 - 74,122,281NCBI
Celera869,918,262 - 69,957,163 (+)NCBI
Cytogenetic Map8q21.11NCBI
HuRef869,411,980 - 69,450,876 (+)NCBIHuRef
CHM1_1873,973,943 - 74,012,842 (+)NCBICHM1_1
Terf1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39115,875,634 - 15,914,276 (+)NCBIGRCm39mm39
GRCm39 Ensembl115,875,870 - 15,914,276 (+)Ensembl
GRCm38115,805,546 - 15,844,052 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl115,805,646 - 15,844,052 (+)EnsemblGRCm38mm10GRCm38
MGSCv37115,795,739 - 15,833,510 (+)NCBIGRCm37mm9NCBIm37
MGSCv36115,790,872 - 15,828,643 (+)NCBImm8
Celera115,750,793 - 15,788,563 (+)NCBICelera
Cytogenetic Map1A3NCBI
cM Map14.88NCBI
Terf1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.253,443,103 - 3,472,377 (-)NCBI
Rnor_6.0 Ensembl52,853,459 - 2,882,668 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.052,853,455 - 2,882,731 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.052,843,150 - 2,872,418 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.452,556,918 - 2,586,086 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.152,556,917 - 2,586,086 (-)NCBI
Celera53,039,138 - 3,068,345 (-)NCBICelera
Cytogenetic Map5q11NCBI
Terf1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554447,103,552 - 7,150,323 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554447,103,282 - 7,149,450 (-)NCBIChiLan1.0ChiLan1.0
TERF1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1871,192,716 - 71,231,648 (+)NCBIpanpan1.1PanPan1.1panPan2
Mhudiblu_PPA_v0869,545,115 - 69,583,997 (+)NCBIMhudiblu_PPA_v0panPan3
TERF1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12921,664,378 - 21,701,491 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2921,664,186 - 21,700,495 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2921,929,296 - 21,966,341 (+)NCBI
ROS_Cfam_1.02921,773,860 - 21,811,415 (+)NCBI
UMICH_Zoey_3.12921,832,463 - 21,869,553 (+)NCBI
UNSW_CanFamBas_1.02921,868,610 - 21,906,117 (+)NCBI
UU_Cfam_GSD_1.02922,149,876 - 22,187,001 (+)NCBI
Terf1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530357,612,694 - 57,639,199 (-)NCBI
SpeTri2.0NW_0049366481,809,395 - 1,835,890 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TERF1
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1868,608,830 - 68,647,220 (+)NCBI
ChlSab1.1 Ensembl868,608,844 - 68,648,171 (+)Ensembl
Vero_WHO_p1.0NW_02366603972,734,995 - 72,774,562 (-)NCBI
Terf1
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462474418,120,677 - 18,156,920 (-)NCBI


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 6 2 3 5 2 23 2 3 3
Low 4 2
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSSSCT00000006778   ⟹   ENSSSCP00000006595
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl462,796,999 - 62,831,422 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000043560   ⟹   ENSSSCP00000044800
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl462,796,999 - 62,831,422 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000065102   ⟹   ENSSSCP00000032864
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl462,796,999 - 62,831,422 (-)Ensembl
RefSeq Acc Id: XM_005663028   ⟹   XP_005663085
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1462,797,244 - 62,831,459 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005663029   ⟹   XP_005663086
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1462,797,601 - 62,831,448 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005663085 (Get FASTA)   NCBI Sequence Viewer  
  XP_005663086 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_005663085   ⟸   XM_005663028
- Peptide Label: isoform X1
- UniProtKB: A0A287ALL2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005663086   ⟸   XM_005663029
- Peptide Label: isoform X2
- UniProtKB: A0A286ZMS0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000006595   ⟸   ENSSSCT00000006778
RefSeq Acc Id: ENSSSCP00000032864   ⟸   ENSSSCT00000065102
RefSeq Acc Id: ENSSSCP00000044800   ⟸   ENSSSCT00000043560
Protein Domains
HTH myb-type


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000006184 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00070018169 UniProtKB/TrEMBL
Ensembl Protein ENSSSCP00000006595 UniProtKB/TrEMBL
  ENSSSCP00000032864 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCP00000044800 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCP00070029980 UniProtKB/TrEMBL
  ENSSSCP00070029987 UniProtKB/TrEMBL
  ENSSSCP00070029993 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000006778 UniProtKB/TrEMBL
  ENSSSCT00000043560 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCT00000065102 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCT00070035880 UniProtKB/TrEMBL
  ENSSSCT00070035889 UniProtKB/TrEMBL
  ENSSSCT00070035895 UniProtKB/TrEMBL
Gene3D-CATH 1.25.40.210 UniProtKB/TrEMBL
InterPro Homeobox-like_sf UniProtKB/TrEMBL
  Myb_dom UniProtKB/TrEMBL
  SANT/Myb UniProtKB/TrEMBL
  Telomere_rpt-bd_fac_dimer_dom UniProtKB/TrEMBL
  Telomere_rpt-bd_fac_dimer_sf UniProtKB/TrEMBL
  TERF1/2 UniProtKB/TrEMBL
KEGG Report ssc:100516798 UniProtKB/TrEMBL
NCBI Gene TERF1 ENTREZGENE
Pfam Myb_DNA-binding UniProtKB/TrEMBL
  TRF UniProtKB/TrEMBL
PIRSF Telomere_bd-1_Pin2 UniProtKB/TrEMBL
PROSITE HTH_MYB UniProtKB/TrEMBL
SMART SANT UniProtKB/TrEMBL
Superfamily-SCOP SSF46689 UniProtKB/TrEMBL
  SSF63600 UniProtKB/TrEMBL
UniProt A0A286ZMS0 ENTREZGENE, UniProtKB/TrEMBL
  A0A287ALL2 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1UIZ8_PIG UniProtKB/TrEMBL
  A0A4X1UL63_PIG UniProtKB/TrEMBL
  A0A4X1UP77_PIG UniProtKB/TrEMBL
  F1RWI3_PIG UniProtKB/TrEMBL
VGNC ID VGNC:93881 ENTREZGENE