CAVIN2 (caveolae associated protein 2) - Rat Genome Database

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Gene: CAVIN2 (caveolae associated protein 2) Sus scrofa
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Symbol: CAVIN2
Name: caveolae associated protein 2
RGD ID: 14000510
Description: ENCODES a protein that exhibits phosphatidylserine binding (inferred); protein kinase C binding (inferred); INVOLVED IN plasma membrane tubulation (inferred); ASSOCIATED WITH genetic disease (ortholog); Hirschsprung's disease (ortholog); Neurodevelopmental Disorders (ortholog); FOUND IN caveola (inferred); cytoplasm (inferred); cytosol (inferred); INTERACTS WITH deoxynivalenol; resveratrol
Type: protein-coding
RefSeq Status: MODEL
Previously known as: SDPR; serum deprivation response; serum deprivation-response protein
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1596,474,284 - 96,490,016 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11596,476,675 - 96,490,231 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.215107,752,053 - 107,765,594 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
caveola  (IBA,IEA)
cytoplasm  (IBA,IEA)
cytosol  (IEA)
membrane  (IEA)
membrane raft  (IEA)
nucleoplasm  (IEA)
plasma membrane  (IEA)

Molecular Function

References
Additional References at PubMed
PMID:14681463   PMID:17145712   PMID:30032202  


Genomics

Comparative Map Data
CAVIN2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1596,474,284 - 96,490,016 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11596,476,675 - 96,490,231 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.215107,752,053 - 107,765,594 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CAVIN2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382191,834,310 - 191,847,088 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2191,834,310 - 191,847,088 (-)EnsemblGRCh38hg38GRCh38
GRCh372192,699,036 - 192,711,814 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362192,407,281 - 192,420,226 (-)NCBINCBI36Build 36hg18NCBI36
Build 342192,525,246 - 192,537,296NCBI
Celera2186,294,205 - 186,307,180 (-)NCBICelera
Cytogenetic Map2q32.3NCBI
HuRef2184,557,290 - 184,570,265 (-)NCBIHuRef
CHM1_12192,705,004 - 192,717,980 (-)NCBICHM1_1
T2T-CHM13v2.02192,322,523 - 192,335,302 (-)NCBIT2T-CHM13v2.0
Cavin2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39151,328,285 - 51,342,119 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl151,328,285 - 51,342,119 (+)EnsemblGRCm39 Ensembl
GRCm38151,289,126 - 51,302,960 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl151,289,126 - 51,302,960 (+)EnsemblGRCm38mm10GRCm38
MGSCv37151,345,970 - 51,359,804 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36151,233,671 - 51,247,505 (+)NCBIMGSCv36mm8
Celera151,588,665 - 51,602,512 (+)NCBICelera
Cytogenetic Map1C1.1NCBI
cM Map126.13NCBI
Cavin2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8957,794,007 - 57,806,024 (-)NCBIGRCr8
mRatBN7.2950,302,079 - 50,314,096 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl950,301,206 - 50,314,147 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx958,844,832 - 58,856,873 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0963,967,673 - 63,979,714 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0962,263,643 - 62,275,680 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0955,244,136 - 55,256,153 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl955,243,255 - 55,256,340 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0954,940,738 - 54,952,755 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4947,373,044 - 47,385,061 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1947,374,457 - 47,386,475 (-)NCBI
Celera947,939,632 - 47,951,653 (-)NCBICelera
Cytogenetic Map9q22NCBI
Cavin2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554037,458,900 - 7,471,257 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554037,459,038 - 7,471,809 (+)NCBIChiLan1.0ChiLan1.0
CAVIN2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21394,508,021 - 94,520,975 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12B94,523,005 - 94,535,934 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02B79,127,676 - 79,140,585 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12B197,042,366 - 197,055,326 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B197,042,366 - 197,055,326 (-)Ensemblpanpan1.1panPan2
CAVIN2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1372,300,301 - 2,307,957 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha373,248,356 - 3,262,084 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0372,188,764 - 2,202,518 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl372,188,758 - 2,202,518 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1372,198,415 - 2,212,031 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0372,165,704 - 2,180,655 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0372,178,440 - 2,192,258 (-)NCBIUU_Cfam_GSD_1.0
Cavin2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303150,371,498 - 150,384,175 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365066,453,652 - 6,466,770 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365066,453,914 - 6,466,574 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CAVIN2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11077,371,220 - 77,384,574 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_023666040122,090,276 - 122,103,217 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cavin2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248544,354,024 - 4,364,992 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248544,354,099 - 4,364,992 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in CAVIN2
128 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 4 4 2 1 3
Low 6 3 3 1 23 2 1
Below cutoff

Sequence


RefSeq Acc Id: ENSSSCT00000025082   ⟹   ENSSSCP00000022203
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1596,474,284 - 96,490,016 (-)Ensembl
RefSeq Acc Id: XM_005652440   ⟹   XP_005652497
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11596,476,675 - 96,490,231 (-)NCBI
Sequence:
RefSeq Acc Id: XP_005652497   ⟸   XM_005652440
- UniProtKB: I3LDR9 (UniProtKB/TrEMBL),   A0A4X1SGA2 (UniProtKB/TrEMBL),   A0A8D1NDH0 (UniProtKB/TrEMBL),   A0A8D0IRC1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000022203   ⟸   ENSSSCT00000025082


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000026618 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00005013695 UniProtKB/TrEMBL
  ENSSSCG00015053363 UniProtKB/TrEMBL
  ENSSSCG00025063952 UniProtKB/TrEMBL
  ENSSSCG00030068129 UniProtKB/TrEMBL
  ENSSSCG00035014368 UniProtKB/TrEMBL
  ENSSSCG00040026846 UniProtKB/TrEMBL
  ENSSSCG00045017962 UniProtKB/TrEMBL
  ENSSSCG00050061300 UniProtKB/TrEMBL
  ENSSSCG00055029992 UniProtKB/TrEMBL
  ENSSSCG00065047321 UniProtKB/TrEMBL
  ENSSSCG00070000739 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000025082 ENTREZGENE
  ENSSSCT00000025082.4 UniProtKB/TrEMBL
  ENSSSCT00005021346.1 UniProtKB/TrEMBL
  ENSSSCT00015071074.1 UniProtKB/TrEMBL
  ENSSSCT00025087617.1 UniProtKB/TrEMBL
  ENSSSCT00030095281.1 UniProtKB/TrEMBL
  ENSSSCT00035018187.1 UniProtKB/TrEMBL
  ENSSSCT00040035905.1 UniProtKB/TrEMBL
  ENSSSCT00045030562.1 UniProtKB/TrEMBL
  ENSSSCT00050083528.1 UniProtKB/TrEMBL
  ENSSSCT00055059632.1 UniProtKB/TrEMBL
  ENSSSCT00065064719.1 UniProtKB/TrEMBL
  ENSSSCT00070001366.1 UniProtKB/TrEMBL
InterPro Cavin_fam UniProtKB/TrEMBL
KEGG Report ssc:100517010 UniProtKB/TrEMBL
NCBI Gene CAVIN2 ENTREZGENE
PANTHER PTHR15240 UniProtKB/TrEMBL
  PTHR15240:SF1 UniProtKB/TrEMBL
Pfam PTRF_SDPR UniProtKB/TrEMBL
UniProt A0A4X1SGA2 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0IRC1 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1NDH0 ENTREZGENE, UniProtKB/TrEMBL
  I3LDR9 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:95489 ENTREZGENE