C9H11orf97 (chromosome 9 C11orf97 homolog) - Rat Genome Database

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Gene: C9H11orf97 (chromosome 9 C11orf97 homolog) Sus scrofa
Analyze
Symbol: C9H11orf97 (Ensembl: C11orf97)
Name: chromosome 9 C11orf97 homolog
RGD ID: 14000221
Description: INVOLVED IN cilium assembly (ortholog); ASSOCIATED WITH genetic disease (ortholog); FOUND IN ciliary basal body (ortholog); INTERACTS WITH deoxynivalenol
Type: protein-coding
RefSeq Status: MODEL
Previously known as: uncharacterized protein C9H11orf97
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl926,648,086 - 26,669,961 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1926,648,044 - 26,670,421 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2930,402,058 - 30,424,402 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
C9H11orf97
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl926,648,086 - 26,669,961 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1926,648,044 - 26,670,421 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2930,402,058 - 30,424,402 (+)NCBISscrofa10.2Sscrofa10.2susScr3
C11orf97
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381194,512,461 - 94,532,123 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1194,512,461 - 94,532,123 (+)EnsemblGRCh38hg38GRCh38
GRCh371194,245,627 - 94,265,289 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361193,885,253 - 93,904,937 (+)NCBINCBI36Build 36hg18NCBI36
Celera1191,533,505 - 91,553,099 (+)NCBICelera
Cytogenetic Map11q21NCBI
HuRef1190,311,195 - 90,330,737 (+)NCBIHuRef
CHM1_11194,128,714 - 94,148,277 (+)NCBICHM1_1
T2T-CHM13v2.01194,519,509 - 94,539,168 (+)NCBIT2T-CHM13v2.0
1700012B09Rik
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39914,667,888 - 14,682,345 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl914,667,883 - 14,682,326 (-)EnsemblGRCm39 Ensembl
GRCm38914,756,592 - 14,771,049 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl914,756,587 - 14,771,030 (-)EnsemblGRCm38mm10GRCm38
MGSCv37914,562,635 - 14,575,474 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36914,508,593 - 14,521,423 (-)NCBIMGSCv36mm8
Celera912,038,805 - 12,051,767 (-)NCBICelera
Cytogenetic Map9A2NCBI
cM Map94.31NCBI
C8h11orf97
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8819,884,682 - 19,901,931 (-)NCBIGRCr8
mRatBN7.2811,603,225 - 11,618,729 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl811,603,225 - 11,618,729 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx815,587,953 - 15,603,510 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0813,885,697 - 13,901,255 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0811,861,262 - 11,876,881 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0813,275,270 - 13,292,587 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl813,275,270 - 13,290,773 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0813,215,950 - 13,231,433 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4811,558,060 - 11,573,935 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera813,072,910 - 13,088,393 (-)NCBICelera
Cytogenetic Map8q12NCBI
CUNH11orf97
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955605399,534 - 421,648 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955605411,307 - 421,934 (-)NCBIChiLan1.0ChiLan1.0
C9H11orf97
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2995,359,590 - 95,379,247 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11196,450,909 - 96,470,735 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01189,519,161 - 89,538,858 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11193,004,501 - 93,024,099 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1193,004,501 - 93,024,099 (+)Ensemblpanpan1.1panPan2
C21H11orf97
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1216,406,406 - 6,425,574 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl216,406,488 - 6,425,415 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha216,417,099 - 6,436,252 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0216,586,799 - 6,605,991 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.1216,373,938 - 6,393,082 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0216,436,957 - 6,456,109 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0216,485,827 - 6,504,978 (-)NCBIUU_Cfam_GSD_1.0
CUNH11orf97
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494779,439,154 - 79,456,603 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936674435,119 - 452,150 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936674435,673 - 452,150 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CUNH11orf97
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1185,714,535 - 85,737,073 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl185,714,823 - 85,737,144 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604340,039,175 - 40,060,932 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
CUNH11orf97
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473539,173,421 - 39,210,180 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473539,173,905 - 39,209,871 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in C9H11orf97
908 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system endocrine system hemolymphoid system nervous system renal system reproductive system respiratory system
High
Medium 1
Low 10 3 1 20 2 2 1
Below cutoff 1

Sequence


Reference Sequences
RefSeq Acc Id: ENSSSCT00000016318   ⟹   ENSSSCP00000015881
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl926,648,086 - 26,669,750 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000054300   ⟹   ENSSSCP00000055603
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl926,648,110 - 26,669,961 (+)Ensembl
RefSeq Acc Id: XM_003129791   ⟹   XP_003129839
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1926,648,045 - 26,670,421 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013979287   ⟹   XP_013834741
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1926,648,044 - 26,665,288 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013979288   ⟹   XP_013834742
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1926,648,044 - 26,670,421 (+)NCBI
Sequence:
RefSeq Acc Id: XR_305284
Type: NON-CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1926,648,044 - 26,670,421 (+)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: XP_013834742   ⟸   XM_013979288
- Peptide Label: isoform X2
- UniProtKB: A0A287BGE4 (UniProtKB/TrEMBL),   A0A8D1WW86 (UniProtKB/TrEMBL),   A0A4X1TU56 (UniProtKB/TrEMBL),   A0A8D0NJ10 (UniProtKB/TrEMBL),   A0A8D1JC70 (UniProtKB/TrEMBL),   A0A8D0IN65 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013834741   ⟸   XM_013979287
- Peptide Label: isoform X1
- UniProtKB: F1STJ7 (UniProtKB/TrEMBL),   A0A8D1F2E4 (UniProtKB/TrEMBL),   A0A4X1TXB2 (UniProtKB/TrEMBL),   A0A8D0LJ78 (UniProtKB/TrEMBL),   A0A8D1L985 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_003129839   ⟸   XM_003129791
- Peptide Label: isoform X1
- UniProtKB: F1STJ7 (UniProtKB/TrEMBL),   A0A8D1F2E4 (UniProtKB/TrEMBL),   A0A4X1TXB2 (UniProtKB/TrEMBL),   A0A8D0LJ78 (UniProtKB/TrEMBL),   A0A8D1L985 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000055603   ⟸   ENSSSCT00000054300
RefSeq Acc Id: ENSSSCP00000015881   ⟸   ENSSSCT00000016318


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000014957 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00005014993 UniProtKB/TrEMBL
  ENSSSCG00015036535 UniProtKB/TrEMBL
  ENSSSCG00025042491 UniProtKB/TrEMBL
  ENSSSCG00030067477 UniProtKB/TrEMBL
  ENSSSCG00035033886 UniProtKB/TrEMBL
  ENSSSCG00040054306 UniProtKB/TrEMBL
  ENSSSCG00045036220 UniProtKB/TrEMBL
  ENSSSCG00050059904 UniProtKB/TrEMBL
  ENSSSCG00055000915 UniProtKB/TrEMBL
  ENSSSCG00060073314 UniProtKB/TrEMBL
  ENSSSCG00065048142 UniProtKB/TrEMBL
  ENSSSCG00070012362 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000016318 ENTREZGENE
  ENSSSCT00000016318.5 UniProtKB/TrEMBL
  ENSSSCT00000054300 ENTREZGENE
  ENSSSCT00000054300.3 UniProtKB/TrEMBL
  ENSSSCT00005023437.1 UniProtKB/TrEMBL
  ENSSSCT00005023463.1 UniProtKB/TrEMBL
  ENSSSCT00015048500.1 UniProtKB/TrEMBL
  ENSSSCT00015048590.1 UniProtKB/TrEMBL
  ENSSSCT00025057547.1 UniProtKB/TrEMBL
  ENSSSCT00025057647.1 UniProtKB/TrEMBL
  ENSSSCT00030094343.1 UniProtKB/TrEMBL
  ENSSSCT00030094363.1 UniProtKB/TrEMBL
  ENSSSCT00035044922.1 UniProtKB/TrEMBL
  ENSSSCT00035044925.1 UniProtKB/TrEMBL
  ENSSSCT00040073471.1 UniProtKB/TrEMBL
  ENSSSCT00040073524.1 UniProtKB/TrEMBL
  ENSSSCT00045062258.1 UniProtKB/TrEMBL
  ENSSSCT00045062279.1 UniProtKB/TrEMBL
  ENSSSCT00050081606.1 UniProtKB/TrEMBL
  ENSSSCT00050081610.1 UniProtKB/TrEMBL
  ENSSSCT00055001608.1 UniProtKB/TrEMBL
  ENSSSCT00055001615.1 UniProtKB/TrEMBL
  ENSSSCT00060100192.1 UniProtKB/TrEMBL
  ENSSSCT00060100229.1 UniProtKB/TrEMBL
  ENSSSCT00065065843.1 UniProtKB/TrEMBL
  ENSSSCT00065065849.1 UniProtKB/TrEMBL
  ENSSSCT00070024118.1 UniProtKB/TrEMBL
  ENSSSCT00070024121.1 UniProtKB/TrEMBL
InterPro C11orf97-like UniProtKB/TrEMBL
KEGG Report ssc:100517177 UniProtKB/TrEMBL
NCBI Gene C9H11orf97 ENTREZGENE
PANTHER CHROMOSOME 11 OPEN READING FRAME 97 UniProtKB/TrEMBL
  PTHR38326 UniProtKB/TrEMBL
UniProt A0A287BGE4 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1TU56 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1TXB2 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0IN65 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0LJ78 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0NJ10 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1F2E4 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1JC70 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1L985 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1WW86 ENTREZGENE, UniProtKB/TrEMBL
  F1STJ7 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:86091 ENTREZGENE