MRPL27 (mitochondrial ribosomal protein L27) - Rat Genome Database

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Gene: MRPL27 (mitochondrial ribosomal protein L27) Sus scrofa
Analyze
Symbol: MRPL27
Name: mitochondrial ribosomal protein L27
RGD ID: 14000174
Description: ENCODES a protein that exhibits structural constituent of ribosome (inferred); INVOLVED IN translation (inferred); ASSOCIATED WITH genetic disease (ortholog); osteogenesis imperfecta type 1 (ortholog); trichodontoosseous syndrome (ortholog); FOUND IN mitochondrion (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: 39S ribosomal protein L27, mitochondrial; 39S ribosomal protein L27, mitochondrial-like
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1226,663,595 - 26,664,984 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11226,663,884 - 26,670,167 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21226,754,907 - 26,761,191 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
translation  (IEA)

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:14681463   PMID:17145712   PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
MRPL27
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1226,663,595 - 26,664,984 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11226,663,884 - 26,670,167 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21226,754,907 - 26,761,191 (+)NCBISscrofa10.2Sscrofa10.2susScr3
MRPL27
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381750,367,867 - 50,373,184 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1750,367,857 - 50,373,207 (-)EnsemblGRCh38hg38GRCh38
GRCh371748,445,228 - 48,450,545 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361745,800,227 - 45,805,561 (-)NCBINCBI36Build 36hg18NCBI36
Build 341745,800,227 - 45,805,561NCBI
Celera1744,906,525 - 44,911,851 (-)NCBICelera
Cytogenetic Map17q21.33NCBI
HuRef1743,813,098 - 43,818,424 (-)NCBIHuRef
CHM1_11748,509,076 - 48,514,410 (-)NCBICHM1_1
T2T-CHM13v2.01751,234,852 - 51,240,169 (-)NCBIT2T-CHM13v2.0
Mrpl27
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391194,544,593 - 94,552,758 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1194,544,593 - 94,550,915 (+)EnsemblGRCm39 Ensembl
GRCm381194,653,770 - 94,661,932 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1194,653,767 - 94,660,089 (+)EnsemblGRCm38mm10GRCm38
MGSCv371194,515,105 - 94,521,401 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361194,469,881 - 94,476,177 (+)NCBIMGSCv36mm8
Celera11104,272,932 - 104,279,168 (+)NCBICelera
Cytogenetic Map11DNCBI
cM Map1158.9NCBI
Mrpl27
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81080,092,327 - 80,098,105 (+)NCBIGRCr8
mRatBN7.21079,595,459 - 79,601,242 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1079,595,479 - 79,601,239 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1084,200,105 - 84,205,868 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01083,698,181 - 83,703,944 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01079,213,659 - 79,219,419 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01082,375,572 - 82,381,332 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1082,375,572 - 82,381,332 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01082,194,189 - 82,199,949 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41083,287,375 - 83,293,135 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11083,301,749 - 83,307,488 (+)NCBI
Celera1078,382,862 - 78,388,622 (+)NCBICelera
Cytogenetic Map10q26NCBI
Mrpl27
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545111,336,070 - 11,342,353 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495545111,336,070 - 11,342,353 (+)NCBIChiLan1.0ChiLan1.0
MRPL27
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21966,559,687 - 66,565,045 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11771,366,770 - 71,372,128 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01744,462,261 - 44,467,605 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11749,336,452 - 49,341,783 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1749,336,449 - 49,341,783 (-)Ensemblpanpan1.1panPan2
MRPL27
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1926,336,595 - 26,342,512 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl926,336,598 - 26,342,424 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha925,729,593 - 25,735,493 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0927,131,012 - 27,136,917 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl927,131,013 - 27,136,848 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1925,898,796 - 25,904,691 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0926,157,441 - 26,163,369 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0926,287,485 - 26,293,392 (-)NCBIUU_Cfam_GSD_1.0
Mrpl27
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560225,753,466 - 25,758,955 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493649011,316,169 - 11,322,515 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493649011,316,243 - 11,321,673 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MRPL27
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11642,957,287 - 42,962,554 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1642,957,253 - 42,962,328 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607713,672,969 - 13,678,299 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Mrpl27
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247956,301,936 - 6,309,778 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247956,302,983 - 6,309,250 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in MRPL27
109 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 10 4 3 5 2 22 2 3 3
Low 1
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSSSCT00000024316   ⟹   ENSSSCP00000022713
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1226,663,901 - 26,670,150 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000069363   ⟹   ENSSSCP00000065958
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1226,663,887 - 26,668,530 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000072396   ⟹   ENSSSCP00000062056
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1226,663,595 - 26,664,984 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000076168   ⟹   ENSSSCP00000069149
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1226,663,887 - 26,668,980 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000079622   ⟹   ENSSSCP00000062397
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1226,667,800 - 26,670,150 (-)Ensembl
RefSeq Acc Id: XM_003483010   ⟹   XP_003483058
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11226,663,884 - 26,670,167 (-)NCBI
Sequence:
RefSeq Acc Id: XM_003483011   ⟹   XP_003483059
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11226,663,884 - 26,670,121 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_003483058 (Get FASTA)   NCBI Sequence Viewer  
  XP_003483059 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSSCP00000062056.1
  ENSSSCP00000062397.1
  ENSSSCP00005015715.1
  ENSSSCP00005015724.1
  ENSSSCP00005015740.1
  ENSSSCP00005015753.1
  ENSSSCP00015036480.1
  ENSSSCP00015036510.1
  ENSSSCP00015036580.1
  ENSSSCP00015036610.1
  ENSSSCP00025018128.1
  ENSSSCP00025018167.1
  ENSSSCP00025018192.1
  ENSSSCP00025018215.1
  ENSSSCP00025018237.1
  ENSSSCP00030027615.1
  ENSSSCP00030027622.1
  ENSSSCP00030027641.1
  ENSSSCP00030027645.1
  ENSSSCP00030027659.1
  ENSSSCP00035024355.1
  ENSSSCP00035024358.1
  ENSSSCP00035024362.1
  ENSSSCP00035024365.1
  ENSSSCP00035024367.1
  ENSSSCP00040014267.1
  ENSSSCP00040014298.1
  ENSSSCP00040014308.1
  ENSSSCP00040014338.1
  ENSSSCP00040014357.1
  ENSSSCP00045007011.1
  ENSSSCP00045007027.1
  ENSSSCP00045007033.1
  ENSSSCP00045007045.1
  ENSSSCP00045007053.1
  ENSSSCP00050043856.1
  ENSSSCP00050043859.1
  ENSSSCP00050043864.1
  ENSSSCP00050043867.1
  ENSSSCP00055004638.1
  ENSSSCP00055004656.1
  ENSSSCP00055004667.1
  ENSSSCP00055004677.1
  ENSSSCP00055004682.1
  ENSSSCP00060038574.1
  ENSSSCP00060038583.1
  ENSSSCP00060038608.1
  ENSSSCP00060038618.1
  ENSSSCP00065040895.1
  ENSSSCP00065040908.1
  ENSSSCP00065040911.1
  ENSSSCP00065040915.1
  ENSSSCP00070021266.1
  ENSSSCP00070021269.1
Reference Protein Sequences
RefSeq Acc Id: XP_003483058   ⟸   XM_003483010
- Peptide Label: isoform X2
- UniProtKB: F1RT79 (UniProtKB/TrEMBL),   A0A4X1U0F6 (UniProtKB/TrEMBL),   A0A8D0IME8 (UniProtKB/TrEMBL),   A0A8D1NY38 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_003483059   ⟸   XM_003483011
- Peptide Label: isoform X1
- UniProtKB: A0A8D0IME8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000062397   ⟸   ENSSSCT00000079622
RefSeq Acc Id: ENSSSCP00000065958   ⟸   ENSSSCT00000069363
RefSeq Acc Id: ENSSSCP00000069149   ⟸   ENSSSCT00000076168
RefSeq Acc Id: ENSSSCP00000022713   ⟸   ENSSSCT00000024316
RefSeq Acc Id: ENSSSCP00000062056   ⟸   ENSSSCT00000072396


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000023783 Ensembl, UniProtKB/TrEMBL
  ENSSSCG00000061531 UniProtKB/TrEMBL
  ENSSSCG00005016445 UniProtKB/TrEMBL
  ENSSSCG00015066538 UniProtKB/TrEMBL
  ENSSSCG00025031349 UniProtKB/TrEMBL
  ENSSSCG00030043252 UniProtKB/TrEMBL
  ENSSSCG00035045537 UniProtKB/TrEMBL
  ENSSSCG00040025862 UniProtKB/TrEMBL
  ENSSSCG00045006230 UniProtKB/TrEMBL
  ENSSSCG00050073789 UniProtKB/TrEMBL
  ENSSSCG00055003069 UniProtKB/TrEMBL
  ENSSSCG00060065271 UniProtKB/TrEMBL
  ENSSSCG00065068092 UniProtKB/TrEMBL
  ENSSSCG00070013155 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000072396.2 UniProtKB/TrEMBL
  ENSSSCT00000079622.1 UniProtKB/TrEMBL
  ENSSSCT00005025940.1 UniProtKB/TrEMBL
  ENSSSCT00005025960.1 UniProtKB/TrEMBL
  ENSSSCT00005025985.1 UniProtKB/TrEMBL
  ENSSSCT00005026006.1 UniProtKB/TrEMBL
  ENSSSCT00015089418.1 UniProtKB/TrEMBL
  ENSSSCT00015089492.1 UniProtKB/TrEMBL
  ENSSSCT00015089614.1 UniProtKB/TrEMBL
  ENSSSCT00015089660.1 UniProtKB/TrEMBL
  ENSSSCT00025042591.1 UniProtKB/TrEMBL
  ENSSSCT00025042686.1 UniProtKB/TrEMBL
  ENSSSCT00025042752.1 UniProtKB/TrEMBL
  ENSSSCT00025042823.1 UniProtKB/TrEMBL
  ENSSSCT00025042871.1 UniProtKB/TrEMBL
  ENSSSCT00030060308.1 UniProtKB/TrEMBL
  ENSSSCT00030060327.1 UniProtKB/TrEMBL
  ENSSSCT00030060365.1 UniProtKB/TrEMBL
  ENSSSCT00030060374.1 UniProtKB/TrEMBL
  ENSSSCT00030060396.1 UniProtKB/TrEMBL
  ENSSSCT00035060529.1 UniProtKB/TrEMBL
  ENSSSCT00035060539.1 UniProtKB/TrEMBL
  ENSSSCT00035060547.1 UniProtKB/TrEMBL
  ENSSSCT00035060563.1 UniProtKB/TrEMBL
  ENSSSCT00035060565.1 UniProtKB/TrEMBL
  ENSSSCT00040034508.1 UniProtKB/TrEMBL
  ENSSSCT00040034578.1 UniProtKB/TrEMBL
  ENSSSCT00040034605.1 UniProtKB/TrEMBL
  ENSSSCT00040034668.1 UniProtKB/TrEMBL
  ENSSSCT00040034703.1 UniProtKB/TrEMBL
  ENSSSCT00045010319.1 UniProtKB/TrEMBL
  ENSSSCT00045010339.1 UniProtKB/TrEMBL
  ENSSSCT00045010348.1 UniProtKB/TrEMBL
  ENSSSCT00045010364.1 UniProtKB/TrEMBL
  ENSSSCT00045010373.1 UniProtKB/TrEMBL
  ENSSSCT00050100939.1 UniProtKB/TrEMBL
  ENSSSCT00050100943.1 UniProtKB/TrEMBL
  ENSSSCT00050100950.1 UniProtKB/TrEMBL
  ENSSSCT00050100954.1 UniProtKB/TrEMBL
  ENSSSCT00055005934.1 UniProtKB/TrEMBL
  ENSSSCT00055005956.1 UniProtKB/TrEMBL
  ENSSSCT00055005967.1 UniProtKB/TrEMBL
  ENSSSCT00055005979.1 UniProtKB/TrEMBL
  ENSSSCT00055005984.1 UniProtKB/TrEMBL
  ENSSSCT00060089126.1 UniProtKB/TrEMBL
  ENSSSCT00060089145.1 UniProtKB/TrEMBL
  ENSSSCT00060089186.1 UniProtKB/TrEMBL
  ENSSSCT00060089202.1 UniProtKB/TrEMBL
  ENSSSCT00065093475.1 UniProtKB/TrEMBL
  ENSSSCT00065093502.1 UniProtKB/TrEMBL
  ENSSSCT00065093506.1 UniProtKB/TrEMBL
  ENSSSCT00065093517.1 UniProtKB/TrEMBL
  ENSSSCT00070025647.1 UniProtKB/TrEMBL
  ENSSSCT00070025650.1 UniProtKB/TrEMBL
Gene3D-CATH 2.40.50.100 UniProtKB/TrEMBL
InterPro Ribosomal_L27 UniProtKB/TrEMBL
KEGG Report ssc:100737651 UniProtKB/TrEMBL
NCBI Gene MRPL27 ENTREZGENE
PANTHER 39S RIBOSOMAL PROTEIN L27, MITOCHONDRIAL UniProtKB/TrEMBL
  PTHR15893 UniProtKB/TrEMBL
Pfam Ribosomal_L27 UniProtKB/TrEMBL
PRINTS RIBOSOMALL27 UniProtKB/TrEMBL
Superfamily-SCOP Ribosomal L27 protein-like UniProtKB/TrEMBL
UniProt A0A4X1TV98_PIG UniProtKB/TrEMBL
  A0A4X1U0F6 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0IME8 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0PPM8_PIG UniProtKB/TrEMBL
  A0A8D0RJP9_PIG UniProtKB/TrEMBL
  A0A8D1GNH6_PIG UniProtKB/TrEMBL
  A0A8D1GXN2_PIG UniProtKB/TrEMBL
  A0A8D1NWB0_PIG UniProtKB/TrEMBL
  A0A8D1NY38 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1NY83_PIG UniProtKB/TrEMBL
  F1RT79 ENTREZGENE
UniProt Secondary A0A5G2QK13 UniProtKB/TrEMBL
  A0A5G2QV57 UniProtKB/TrEMBL
  F1RT79 UniProtKB/TrEMBL
VGNC ID VGNC:90358 ENTREZGENE