BRIX1 (biogenesis of ribosomes BRX1) - Rat Genome Database

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Gene: BRIX1 (biogenesis of ribosomes BRX1) Sus scrofa
Analyze
Symbol: BRIX1
Name: biogenesis of ribosomes BRX1
RGD ID: 13998257
Description: ENCODES a protein that exhibits RNA binding (inferred); rRNA binding (inferred); INVOLVED IN rRNA processing (inferred); ASSOCIATED WITH alpha-methylacyl-CoA racemase deficiency (ortholog); genetic disease (ortholog); Neurodevelopmental Disorders (ortholog); FOUND IN chromosome (inferred); nucleolus (inferred); nucleus (inferred); INTERACTS WITH deoxynivalenol
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: BRX1, biogenesis of ribosomes, homolog; ribosome biogenesis protein BRX1 homolog
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1620,512,280 - 20,522,181 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11620,512,281 - 20,520,579 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21621,414,147 - 21,422,488 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
chromosome  (IEA)
nucleolus  (IEA)
nucleus  (IEA)

Molecular Function

References
Additional References at PubMed
PMID:14681463   PMID:15679890   PMID:17145712   PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
BRIX1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1620,512,280 - 20,522,181 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11620,512,281 - 20,520,579 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21621,414,147 - 21,422,488 (+)NCBISscrofa10.2Sscrofa10.2susScr3
BRIX1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38534,915,711 - 34,925,996 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl534,915,677 - 34,925,996 (+)EnsemblGRCh38hg38GRCh38
GRCh37534,915,816 - 34,926,101 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36534,951,577 - 34,961,544 (+)NCBINCBI36Build 36hg18NCBI36
Celera534,798,052 - 34,808,019 (+)NCBICelera
Cytogenetic Map5p13.2NCBI
HuRef534,864,475 - 34,874,444 (+)NCBIHuRef
CHM1_1534,918,180 - 34,928,149 (+)NCBICHM1_1
T2T-CHM13v2.0535,162,745 - 35,173,028 (+)NCBIT2T-CHM13v2.0
Brix1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391510,474,865 - 10,486,023 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1510,474,865 - 10,486,033 (-)EnsemblGRCm39 Ensembl
GRCm381510,474,779 - 10,485,937 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1510,474,779 - 10,485,947 (-)EnsemblGRCm38mm10GRCm38
MGSCv371510,404,534 - 10,415,692 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361510,420,906 - 10,430,632 (-)NCBIMGSCv36mm8
Celera1510,271,850 - 10,283,020 (-)NCBICelera
Cytogenetic Map15A1NCBI
cM Map155.35NCBI
Brix1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8261,177,769 - 61,188,647 (-)NCBIGRCr8
mRatBN7.2259,450,608 - 59,461,486 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl259,450,614 - 59,461,495 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx266,558,326 - 66,569,203 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0264,679,856 - 64,690,733 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0259,681,217 - 59,692,094 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0260,450,547 - 60,461,425 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl260,450,374 - 60,461,458 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0284,212,803 - 84,223,681 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4259,826,894 - 59,837,772 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1259,755,126 - 59,766,005 (-)NCBI
Celera259,212,330 - 59,223,208 (+)NCBICelera
Cytogenetic Map2q16NCBI
Brix1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542620,042,274 - 20,051,606 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495542620,042,274 - 20,051,606 (+)NCBIChiLan1.0ChiLan1.0
BRIX1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2475,410,743 - 75,420,843 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1573,564,375 - 73,574,589 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0575,444,136 - 75,454,911 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1580,723,896 - 80,734,348 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl580,723,896 - 80,734,348 (-)Ensemblpanpan1.1panPan2
BRIX1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1473,375,310 - 73,385,451 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl473,375,304 - 73,385,396 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha472,991,753 - 73,001,881 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0473,881,066 - 73,891,206 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl473,881,060 - 73,891,154 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1473,628,665 - 73,638,767 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0473,752,321 - 73,762,448 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0474,285,566 - 74,295,689 (-)NCBIUU_Cfam_GSD_1.0
Brix1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213224,751,432 - 224,760,886 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365186,610,623 - 6,620,383 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365186,610,623 - 6,620,369 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
BRIX1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1433,807,951 - 33,818,546 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl433,808,309 - 33,820,658 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607124,110,260 - 24,121,180 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Brix1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475919,982,513 - 19,994,637 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475919,982,612 - 19,994,621 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in BRIX1
234 total Variants

Expression


Sequence


RefSeq Acc Id: ENSSSCT00000018320   ⟹   ENSSSCP00000017824
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1620,442,359 - 20,497,128 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000018322   ⟹   ENSSSCP00000017826
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1620,512,280 - 20,522,181 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000068071   ⟹   ENSSSCP00000065746
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1620,512,285 - 20,520,573 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000073155   ⟹   ENSSSCP00000071972
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1620,442,359 - 20,478,632 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000074292   ⟹   ENSSSCP00000065192
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1620,464,906 - 20,520,576 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000090482   ⟹   ENSSSCP00000069254
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1620,442,359 - 20,498,209 (+)Ensembl
RefSeq Acc Id: NM_001244824   ⟹   NP_001231753
RefSeq Status: VALIDATED
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11620,512,281 - 20,520,579 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001231753 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSSCP00000017826
  ENSSSCP00000017826.3
  ENSSSCP00015039453.1
  ENSSSCP00025007412.1
  ENSSSCP00040022788.1
  ENSSSCP00050038244.1
  ENSSSCP00065012396.1
RefSeq Acc Id: NP_001231753   ⟸   NM_001244824
- UniProtKB: A0A8D0QWJ6 (UniProtKB/TrEMBL),   F1SND4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000065192   ⟸   ENSSSCT00000074292
RefSeq Acc Id: ENSSSCP00000065746   ⟸   ENSSSCT00000068071
RefSeq Acc Id: ENSSSCP00000069254   ⟸   ENSSSCT00000090482
RefSeq Acc Id: ENSSSCP00000071972   ⟸   ENSSSCT00000073155
RefSeq Acc Id: ENSSSCP00000017826   ⟸   ENSSSCT00000018322
RefSeq Acc Id: ENSSSCP00000017824   ⟸   ENSSSCT00000018320
Protein Domains
Brix


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000016827 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00015071430 UniProtKB/TrEMBL
  ENSSSCG00025013530 UniProtKB/TrEMBL
  ENSSSCG00040040808 UniProtKB/TrEMBL
  ENSSSCG00050065394 UniProtKB/TrEMBL
  ENSSSCG00065022745 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000018322 ENTREZGENE
  ENSSSCT00000018322.5 UniProtKB/TrEMBL
  ENSSSCT00015096041.1 UniProtKB/TrEMBL
  ENSSSCT00025018337.1 UniProtKB/TrEMBL
  ENSSSCT00040054796.1 UniProtKB/TrEMBL
  ENSSSCT00050089084.1 UniProtKB/TrEMBL
  ENSSSCT00065030300.1 UniProtKB/TrEMBL
Gene3D-CATH Probable brix-domain ribosomal biogenesis protein UniProtKB/TrEMBL
InterPro Brix UniProtKB/TrEMBL
  BRX1 UniProtKB/TrEMBL
NCBI Gene BRIX1 ENTREZGENE
PANTHER PTHR13634 UniProtKB/TrEMBL
  RIBOSOME BIOGENESIS PROTEIN BRX1 HOMOLOG UniProtKB/TrEMBL
Pfam Brix UniProtKB/TrEMBL
PROSITE BRIX UniProtKB/TrEMBL
SMART Brix UniProtKB/TrEMBL
Superfamily-SCOP Class II aaRS ABD-related UniProtKB/TrEMBL
UniProt A0A8D0QWJ6 ENTREZGENE, UniProtKB/TrEMBL
  F1SND4 ENTREZGENE, UniProtKB/TrEMBL