SYNE1 (spectrin repeat containing nuclear envelope protein 1) - Rat Genome Database

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Gene: SYNE1 (spectrin repeat containing nuclear envelope protein 1) Sus scrofa
Analyze
Symbol: SYNE1
Name: spectrin repeat containing nuclear envelope protein 1
RGD ID: 13997161
Description: ENCODES a protein that exhibits actin binding (ortholog); actin filament binding (ortholog); cytoskeleton-nuclear membrane anchor activity (ortholog); INVOLVED IN brain development (ortholog); cardiac muscle cell differentiation (ortholog); centrosome localization (ortholog); ASSOCIATED WITH arthrogryposis multiplex congenita (ortholog); arthrogryposis multiplex congenita-3 (ortholog); autosomal dominant Emery-Dreifuss muscular dystrophy 4 (ortholog); FOUND IN cytoplasm (ortholog); dendritic spine (ortholog); dendritic spine head (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: LOW QUALITY PROTEIN: nesprin-1; nesprin-1; spectrin repeat containing, nuclear envelope 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1113,715,644 - 14,201,711 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2116,016,262 - 16,243,210 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

References
Additional References at PubMed
PMID:14681463   PMID:17145712  


Genomics

Comparative Map Data
SYNE1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1113,715,644 - 14,201,711 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2116,016,262 - 16,243,210 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SYNE1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl6152,121,687 - 152,637,801 (-)EnsemblGRCh38hg38GRCh38
GRCh386152,121,687 - 152,637,395 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh376152,442,819 - 152,958,497 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 366152,484,515 - 153,000,227 (-)NCBINCBI36hg18NCBI36
Build 346152,535,028 - 153,050,648NCBI
Celera6153,176,558 - 153,692,233 (-)NCBI
Cytogenetic Map6q25.2NCBI
HuRef6150,004,601 - 150,521,666 (-)NCBIHuRef
CHM1_16152,706,924 - 153,222,498 (-)NCBICHM1_1
Syne1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39104,970,192 - 5,501,013 (-)NCBIGRCm39mm39
GRCm39 Ensembl104,970,917 - 5,501,482 (-)Ensembl
GRCm38105,020,192 - 5,550,692 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl105,020,917 - 5,551,482 (-)EnsemblGRCm38mm10GRCm38
MGSCv37104,795,849 - 5,326,349 (+)NCBIGRCm37mm9NCBIm37
MGSCv36104,795,849 - 5,324,786 (+)NCBImm8
Celera104,962,310 - 5,494,074 (-)NCBICelera
Cytogenetic Map10A1NCBI
Syne1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2141,512,146 - 41,983,382 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl141,512,030 - 41,983,322 (-)Ensembl
Rnor_6.0141,608,287 - 41,763,591 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0141,844,840 - 42,086,662 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl141,608,418 - 42,077,535 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0142,947,742 - 43,158,478 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4135,803,552 - 36,269,628 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1135,805,545 - 35,961,017 (-)NCBI
Celera137,192,707 - 37,662,090 (-)NCBICelera
Cytogenetic Map1q11NCBI
Syne1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554399,131,227 - 9,574,112 (+)NCBIChiLan1.0ChiLan1.0
SYNE1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.16154,627,898 - 155,144,076 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl6154,627,904 - 155,144,076 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v06149,936,306 - 150,454,822 (-)NCBIMhudiblu_PPA_v0panPan3
SYNE1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1142,384,136 - 42,831,229 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl142,384,038 - 42,823,388 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha143,221,975 - 43,670,831 (-)NCBI
ROS_Cfam_1.0142,566,919 - 43,016,022 (-)NCBI
UMICH_Zoey_3.1142,431,948 - 42,888,641 (-)NCBI
UNSW_CanFamBas_1.0142,297,074 - 42,745,721 (-)NCBI
UU_Cfam_GSD_1.0142,790,456 - 43,239,688 (-)NCBI
Syne1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404946137,651,183 - 137,925,972 (-)NCBI
SpeTri2.0NW_0049364894,903,176 - 5,177,987 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SYNE1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11379,572,233 - 80,104,951 (-)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl1379,572,936 - 79,988,893 (-)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604051,905,945 - 52,434,336 (-)NCBIVero_WHO_p1.0
Syne1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247855,647,041 - 6,144,065 (+)NCBIHetGla_female_1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_021084410   ⟹   XP_020940069
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1113,715,644 - 14,201,711 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_020940069 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_020940069   ⟸   XM_021084410
- Sequence:


Additional Information

Database Acc Id Source(s)
NCBI Gene SYNE1 ENTREZGENE