KCNQ1 (potassium voltage-gated channel subfamily Q member 1) - Rat Genome Database

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Gene: KCNQ1 (potassium voltage-gated channel subfamily Q member 1) Sus scrofa
Analyze
Symbol: KCNQ1
Name: potassium voltage-gated channel subfamily Q member 1
RGD ID: 13994611
Description: ENCODES a protein that exhibits delayed rectifier potassium channel activity (ortholog); identical protein binding (ortholog); outward rectifier potassium channel activity (ortholog); INVOLVED IN digestive system process (ortholog); inner ear development (ortholog); intestinal absorption (ortholog); PARTICIPATES IN acebutolol pharmacodynamics pathway; adrenergic beta receptor agonist and beta-blocker pharmacodynamics pathway; amiodarone pharmacodynamics pathway; ASSOCIATED WITH Achlorhydria (ortholog); adenocarcinoma (ortholog); atrial fibrillation (ortholog); FOUND IN apical part of cell (ortholog); apical plasma membrane (ortholog); basolateral part of cell (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: KVLQT1; ovarian voltage-gated K+ channel pore-forming subunit KCNQ1; potassium channel protein (KvLQT1); Potassium voltage-gated channel subfamily KQT member 1; potassium voltage-gated channel subfamily KQT member 1-like; potassium voltage-gated channel, KQT-like subfamily, member 1; ventricular voltage-gated K+ channel pore-forming subunit KCNQ1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl21,675,360 - 1,989,111 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.121,675,323 - 1,989,110 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
adrenergic receptor signaling pathway  (IEA)
atrial cardiac muscle cell action potential  (IEA)
auditory receptor cell development  (IEA)
cardiac conduction  (IEA)
cardiac muscle contraction  (IEA)
cellular response to cAMP  (IEA)
cellular response to epinephrine stimulus  (IEA)
cellular response to xenobiotic stimulus  (IEA)
chloride ion homeostasis  (IEA)
cochlea development  (IEA)
corticosterone secretion  (IEA)
detection of mechanical stimulus involved in sensory perception of sound  (IEA)
digestive system process  (IEA,ISO)
erythrocyte differentiation  (IEA)
gastric acid secretion  (IEA)
gastrin-induced gastric acid secretion  (IEA)
glucose metabolic process  (IEA)
heart development  (IEA)
inner ear development  (IEA,ISO,ISS)
inner ear morphogenesis  (IEA)
intestinal absorption  (ISS)
intracellular chloride ion homeostasis  (IEA)
iodide transport  (IEA)
male gonad development  (ISO)
membrane repolarization  (IEA,ISS)
membrane repolarization during action potential  (IEA)
membrane repolarization during atrial cardiac muscle cell action potential  (IEA)
membrane repolarization during cardiac muscle cell action potential  (IEA)
membrane repolarization during ventricular cardiac muscle cell action potential  (IEA,ISO)
negative regulation of delayed rectifier potassium channel activity  (ISO)
negative regulation of insulin secretion  (ISO)
negative regulation of voltage-gated potassium channel activity  (ISO)
non-motile cilium assembly  (IEA)
positive regulation of cardiac muscle contraction  (IEA)
positive regulation of heart rate  (IEA)
positive regulation of potassium ion transmembrane transport  (IEA)
potassium ion export across plasma membrane  (IEA)
potassium ion homeostasis  (IEA)
potassium ion import across plasma membrane  (IEA)
potassium ion transmembrane transport  (IBA,IEA)
potassium ion transport  (IEA,ISO)
regulation of atrial cardiac muscle cell membrane repolarization  (IEA)
regulation of blood pressure  (IEA)
regulation of gastric acid secretion  (IEA,ISS)
regulation of heart rate  (IEA)
regulation of heart rate by cardiac conduction  (IEA)
regulation of membrane potential  (ISO)
regulation of membrane repolarization  (IEA)
regulation of transporter activity  (ISO)
regulation of ventricular cardiac muscle cell membrane repolarization  (IEA)
regulation of voltage-gated sodium channel activity  (ISO)
renal absorption  (IEA,ISS)
renal sodium ion absorption  (IEA)
response to anesthetic  (ISO)
response to insulin  (IEA)
rhythmic behavior  (IEA)
sensory perception of sound  (IEA)
social behavior  (IEA)
sodium ion transport  (IEA)
stomach development  (IEA)
transmembrane transport  (IEA)
ventricular cardiac muscle cell action potential  (IEA)

Molecular Pathway Annotations     Click to see Annotation Detail View
acebutolol pharmacodynamics pathway   (ISO)
adrenergic beta receptor agonist and beta-blocker pharmacodynamics pathway  (ISO)
amiodarone pharmacodynamics pathway  (ISO)
amlodipine pharmacodynamics pathway  (ISO)
atenolol pharmacodynamics pathway  (ISO)
betaxolol pharmacodynamics pathway  (ISO)
bisoprolol pharmacodynamics pathway  (ISO)
bupranolol drug pathway  (ISO)
bupranolol pharmacodynamics pathway  (ISO)
carvedilol pharmacodynamics pathway  (ISO)
diltiazem pharmacodynamics pathway  (ISO)
disopyramide pharmacodynamics pathway  (ISO)
dobutamine pharmacodynamics pathway  (ISO)
esmolol pharmacodynamics pathway  (ISO)
flecainde pharmacodynamics pathway  (ISO)
fosphenytoin pharmacodynamics pathway  (ISO)
ibutilide pharmacodynamics pathway  (ISO)
isoprenaline pharmacodynamics pathway  (ISO)
isradipine pharmacodynamics pathway  (ISO)
levobunolol pharmacodynamics pathway  (ISO)
lidocaine pharmacodynamics pathway  (ISO)
metoprolol pharmacodynamics pathway  (ISO)
mexiletine pharmacodynamics pathway  (ISO)
nadolol pharmacodynamics pathway  (ISO)
nebivolol pharmacodynamics pathway  (ISO)
nifedipine pharmacodynamics pathway  (ISO)
nimodipine pharmacodynamics pathway  (ISO)
nisoldipine pharmacodynamics pathway  (ISO)
nitrendipine pharmacodynamics pathway  (ISO)
penbutolol pharmacodynamics pathway  (ISO)
phenytoin pharmacodynamics pathway  (ISO)
pindolol pharmacodynamics pathway  (ISO)
procainamide pharmacodynamics pathway  (ISO)
propranolol pharmacodynamics pathway  (ISO)
quinidine pharmacodynamics pathway  (ISO)
sotalol pharmacodynamics pathway  (ISO)
timolol pharmacodynamics pathway  (ISO)
verapamil pharmacodynamics pathway  (ISO)

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
KCNQ1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl21,675,360 - 1,989,111 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.121,675,323 - 1,989,110 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
KCNQ1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38112,445,008 - 2,849,105 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl112,444,654 - 2,849,105 (+)EnsemblGRCh38hg38GRCh38
GRCh37112,466,238 - 2,870,335 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36112,422,797 - 2,826,916 (+)NCBINCBI36Build 36hg18NCBI36
Build 34112,439,259 - 2,826,915NCBI
Celera112,501,049 - 2,905,069 (+)NCBICelera
Cytogenetic Map11p15.5-p15.4NCBI
HuRef112,256,184 - 2,658,673 (+)NCBIHuRef
CHM1_1112,465,155 - 2,869,215 (+)NCBICHM1_1
T2T-CHM13v2.0112,534,332 - 2,938,419 (+)NCBIT2T-CHM13v2.0
Kcnq1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm397142,660,614 - 142,980,787 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl7142,660,099 - 142,980,779 (+)EnsemblGRCm39 Ensembl
GRCm387143,106,877 - 143,427,050 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl7143,106,362 - 143,427,042 (+)EnsemblGRCm38mm10GRCm38
MGSCv377150,293,159 - 150,612,947 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv367142,916,644 - 143,236,432 (+)NCBIMGSCv36mm8
Celera7142,862,859 - 143,182,707 (+)NCBICelera
Cytogenetic Map7F5NCBI
cM Map788.12NCBI
Kcnq1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81207,721,134 - 208,054,073 (+)NCBIGRCr8
mRatBN7.21198,291,711 - 198,624,683 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1198,291,766 - 198,624,669 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1206,670,364 - 207,003,324 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01213,756,445 - 214,089,840 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01206,430,601 - 206,763,990 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01216,293,087 - 216,630,339 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1216,293,087 - 216,630,339 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01223,154,713 - 223,490,458 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41203,383,401 - 203,803,687 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11203,536,853 - 203,957,140 (+)NCBI
Celera1195,860,199 - 196,193,008 (+)NCBICelera
Cytogenetic Map1q42NCBI
Kcnq1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542214,212,553 - 14,544,556 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495542214,212,563 - 14,544,556 (+)NCBIChiLan1.0ChiLan1.0
KCNQ1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v294,855,419 - 5,260,218 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1114,067,311 - 4,472,166 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0112,469,750 - 2,874,467 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1112,498,001 - 2,902,198 (+)NCBIpanpan1.1PanPan1.1panPan2
KCNQ1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11846,554,390 - 46,830,533 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1846,518,908 - 46,830,043 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1845,116,523 - 45,440,309 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01847,186,461 - 47,510,762 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1847,186,461 - 47,517,416 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11846,634,218 - 46,955,821 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01846,214,974 - 46,538,652 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01846,962,029 - 47,285,048 (+)NCBIUU_Cfam_GSD_1.0
Kcnq1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244049472,763,921 - 3,051,025 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936794707,119 - 994,778 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936794707,122 - 994,206 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
KCNQ1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.112,261,448 - 2,661,840 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl12,261,845 - 2,661,863 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603899,462,284 - 99,862,831 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Kcnq1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476715,252,950 - 15,613,562 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476715,252,961 - 15,613,373 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in KCNQ1
5328 total Variants

Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
endoderm
hemolymphoid system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 4 21 3 2 5 14 12 21 3 6 3

Sequence


Ensembl Acc Id: ENSSSCT00000053475   ⟹   ENSSSCP00000038521
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl21,675,360 - 1,989,106 (+)Ensembl
Ensembl Acc Id: ENSSSCT00000059171   ⟹   ENSSSCP00000048195
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl21,675,360 - 1,988,056 (+)Ensembl
Ensembl Acc Id: ENSSSCT00000070393   ⟹   ENSSSCP00000065062
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl21,687,900 - 1,989,111 (+)Ensembl
RefSeq Acc Id: XM_021082619   ⟹   XP_020938278
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.121,675,323 - 1,989,110 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021082620   ⟹   XP_020938279
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.121,675,323 - 1,830,167 (+)NCBI
Sequence:
RefSeq Acc Id: XP_020938278   ⟸   XM_021082619
- Peptide Label: isoform X1
- UniProtKB: Q9TTJ7 (UniProtKB/Swiss-Prot),   A0A287A438 (UniProtKB/Swiss-Prot),   A0A4X1U8X6 (UniProtKB/TrEMBL),   A0A287AVP7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020938279   ⟸   XM_021082620
- Peptide Label: isoform X2
- Sequence:
Ensembl Acc Id: ENSSSCP00000048195   ⟸   ENSSSCT00000059171
Ensembl Acc Id: ENSSSCP00000065062   ⟸   ENSSSCT00000070393
Ensembl Acc Id: ENSSSCP00000038521   ⟸   ENSSSCT00000053475
Protein Domains
Ion transport   Potassium channel voltage dependent KCNQ C-terminal


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000039556 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSSSCG00025025273 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSSSCG00030073514 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSSSCG00045005372 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSSSCG00050009557 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSSSCG00055002634 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSSSCG00060036994 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSSSCG00065065522 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSSSCG00070015013 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000053475 ENTREZGENE
  ENSSSCT00000053475.2 UniProtKB/Swiss-Prot
  ENSSSCT00000059171.3 UniProtKB/TrEMBL
  ENSSSCT00000070393.1 UniProtKB/TrEMBL
  ENSSSCT00025034227.1 UniProtKB/Swiss-Prot
  ENSSSCT00025034428.1 UniProtKB/TrEMBL
  ENSSSCT00030103028.1 UniProtKB/Swiss-Prot
  ENSSSCT00030103079.1 UniProtKB/TrEMBL
  ENSSSCT00045008924.1 UniProtKB/Swiss-Prot
  ENSSSCT00045008930.1 UniProtKB/TrEMBL
  ENSSSCT00050012936.1 UniProtKB/Swiss-Prot
  ENSSSCT00050012964.1 UniProtKB/TrEMBL
  ENSSSCT00055005087.1 UniProtKB/Swiss-Prot
  ENSSSCT00055005111.1 UniProtKB/TrEMBL
  ENSSSCT00060050141.1 UniProtKB/Swiss-Prot
  ENSSSCT00060050147.1 UniProtKB/TrEMBL
  ENSSSCT00065089963.1 UniProtKB/Swiss-Prot
  ENSSSCT00065089976.1 UniProtKB/TrEMBL
  ENSSSCT00070029480.1 UniProtKB/TrEMBL
  ENSSSCT00070029491.1 UniProtKB/TrEMBL
  ENSSSCT00070029507 UniProtKB/TrEMBL
  ENSSSCT00070029507.1 UniProtKB/Swiss-Prot
  ENSSSCT00070029518.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.287.70 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  1.20.120.350 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  6.10.140.1910 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Ion_trans_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  K_chnl_volt-dep_KCNQ UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  K_chnl_volt-dep_KCNQ_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  K_chnl_volt-dep_KCQN1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Volt_channel_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
NCBI Gene KCNQ1 ENTREZGENE
PANTHER POTASSIUM VOLTAGE-GATED CHANNEL SUBFAMILY KQT MEMBER 1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  POTASSIUM VOLTAGE-GATED CHANNEL SUBFAMILY KQT MEMBER 4 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Ion_trans UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  KCNQ_channel UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PRINTS KCHANNEL UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  KCNQ1CHANNEL UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  KCNQCHANNEL UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP Voltage-gated potassium channels UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A287A438 ENTREZGENE
  A0A287AVP7 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1U6T2_PIG UniProtKB/TrEMBL
  A0A4X1U6U4_PIG UniProtKB/TrEMBL
  A0A4X1U8X6 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1U9I9_PIG UniProtKB/TrEMBL
  A0A5G2QST9_PIG UniProtKB/TrEMBL
  KCNQ1_PIG UniProtKB/Swiss-Prot, ENTREZGENE
UniProt Secondary A0A287A438 UniProtKB/Swiss-Prot
VGNC ID VGNC:99782 ENTREZGENE