ACSS1 (acyl-CoA synthetase short chain family member 1) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: ACSS1 (acyl-CoA synthetase short chain family member 1) Sus scrofa
Analyze
Symbol: ACSS1
Name: acyl-CoA synthetase short chain family member 1
RGD ID: 13993445
Description: ENCODES a protein that exhibits acetate-CoA ligase activity (ortholog); INVOLVED IN acetate biosynthetic process (ortholog); acetyl-CoA biosynthetic process (ortholog); propionate biosynthetic process (ortholog); PARTICIPATES IN disulfiram pharmacodynamics pathway; fatty acid beta degradation pathway; malonic aciduria pathway; ASSOCIATED WITH Experimental Melanoma (ortholog); genetic disease (ortholog); Hypothermia (ortholog); FOUND IN mitochondrial matrix (inferred); mitochondrion (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: acetyl-coenzyme A synthetase 2-like, mitochondrial
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1730,800,427 - 30,839,742 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11730,800,536 - 30,839,799 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21734,949,412 - 34,988,665 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
ACSS1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1730,800,427 - 30,839,742 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11730,800,536 - 30,839,799 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21734,949,412 - 34,988,665 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ACSS1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382025,006,237 - 25,058,139 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2025,006,230 - 25,058,980 (-)EnsemblGRCh38hg38GRCh38
GRCh372024,986,873 - 25,038,775 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362024,934,873 - 24,987,616 (-)NCBINCBI36Build 36hg18NCBI36
Build 342024,934,873 - 24,987,616NCBI
Celera2025,060,679 - 25,113,427 (-)NCBICelera
Cytogenetic Map20p11.21NCBI
HuRef2024,943,703 - 24,995,659 (-)NCBIHuRef
CHM1_12024,987,355 - 25,039,309 (-)NCBICHM1_1
T2T-CHM13v2.02025,070,421 - 25,122,324 (-)NCBIT2T-CHM13v2.0
Acss1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392150,460,031 - 150,510,160 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2150,460,025 - 150,510,420 (-)EnsemblGRCm39 Ensembl
GRCm382150,618,111 - 150,668,240 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2150,618,105 - 150,668,500 (-)EnsemblGRCm38mm10GRCm38
MGSCv372150,443,847 - 150,493,976 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362150,309,552 - 150,359,670 (-)NCBIMGSCv36mm8
Celera2151,852,988 - 151,903,233 (-)NCBICelera
Cytogenetic Map2G3NCBI
cM Map274.74NCBI
Acss1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83159,910,809 - 159,960,748 (-)NCBIGRCr8
mRatBN7.23139,450,383 - 139,500,325 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3139,450,383 - 139,500,325 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx3143,346,852 - 143,396,694 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03151,930,593 - 151,980,423 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03149,678,658 - 149,728,584 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.03146,420,346 - 146,470,293 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3146,420,346 - 146,470,293 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03152,779,621 - 152,829,324 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43141,259,016 - 141,308,871 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.13141,164,598 - 141,235,812 (-)NCBI
Celera3138,212,667 - 138,262,509 (-)NCBICelera
Cytogenetic Map3q41NCBI
Acss1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541531,117,303 - 31,154,654 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541531,117,542 - 31,154,654 (-)NCBIChiLan1.0ChiLan1.0
ACSS1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22125,877,357 - 25,932,094 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12025,874,190 - 25,928,929 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02024,946,629 - 25,001,311 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12025,294,186 - 25,348,109 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2025,293,511 - 25,349,017 (-)Ensemblpanpan1.1panPan2
ACSS1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1231,192,771 - 1,251,724 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl231,184,392 - 1,252,255 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha231,222,892 - 1,281,311 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0231,435,773 - 1,494,208 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl231,435,776 - 1,494,754 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1231,251,020 - 1,309,471 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0231,381,192 - 1,439,604 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0231,364,196 - 1,422,653 (-)NCBIUU_Cfam_GSD_1.0
Acss1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640147,319,248 - 147,380,019 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936620739,633 - 800,803 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936620739,633 - 800,472 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
LOC103247057
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Vero_WHO_p1.0NW_0236660872,048,170 - 2,100,706 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Acss1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624939394,884 - 435,098 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624939384,003 - 431,485 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in ACSS1
970 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 8 4 4 2 1 2
Low 2 3 1 2 23 2 1
Below cutoff

Sequence


RefSeq Acc Id: ENSSSCT00000044534   ⟹   ENSSSCP00000047124
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1730,800,427 - 30,839,742 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000056062   ⟹   ENSSSCP00000052353
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1730,800,536 - 30,839,741 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000063197   ⟹   ENSSSCP00000052938
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1730,800,427 - 30,839,715 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000095573   ⟹   ENSSSCP00000078290
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1730,800,541 - 30,839,741 (-)Ensembl
RefSeq Acc Id: XM_001927113   ⟹   XP_001927148
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11730,800,536 - 30,839,799 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005672761   ⟹   XP_005672818
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11730,800,536 - 30,839,791 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021078074   ⟹   XP_020933733
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11730,800,536 - 30,839,761 (-)NCBI
Sequence:
RefSeq Acc Id: XR_002340090
Type: NON-CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11730,800,536 - 30,839,761 (-)NCBI
Sequence:
RefSeq Acc Id: XP_001927148   ⟸   XM_001927113
- Peptide Label: isoform X2
- UniProtKB: A0A8D1HUM9 (UniProtKB/TrEMBL),   A0A480WRN0 (UniProtKB/TrEMBL),   A0A480ZG17 (UniProtKB/TrEMBL),   A0A481B8E5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005672818   ⟸   XM_005672761
- Peptide Label: isoform X3
- UniProtKB: A0A287B7Q9 (UniProtKB/TrEMBL),   A0A4X1V1J2 (UniProtKB/TrEMBL),   A0A8D0UW35 (UniProtKB/TrEMBL),   A0A8D1LXF6 (UniProtKB/TrEMBL),   A0A8D1U2H3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020933733   ⟸   XM_021078074
- Peptide Label: isoform X1
- UniProtKB: A0A287AT39 (UniProtKB/TrEMBL),   A0A4X1V6Y3 (UniProtKB/TrEMBL),   A0A8D1QTS1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000047124   ⟸   ENSSSCT00000044534
RefSeq Acc Id: ENSSSCP00000052353   ⟸   ENSSSCT00000056062
RefSeq Acc Id: ENSSSCP00000052938   ⟸   ENSSSCT00000063197
RefSeq Acc Id: ENSSSCP00000078290   ⟸   ENSSSCT00000095573

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000007133 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00025055835 UniProtKB/TrEMBL
  ENSSSCG00030046687 UniProtKB/TrEMBL
  ENSSSCG00035048934 UniProtKB/TrEMBL
  ENSSSCG00040021059 UniProtKB/TrEMBL
  ENSSSCG00045019552 UniProtKB/TrEMBL
  ENSSSCG00050027225 UniProtKB/TrEMBL
  ENSSSCG00055013758 UniProtKB/TrEMBL
  ENSSSCG00060055423 UniProtKB/TrEMBL
  ENSSSCG00065044674 UniProtKB/TrEMBL
  ENSSSCG00070021840 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000044534 ENTREZGENE
  ENSSSCT00000044534.3 UniProtKB/TrEMBL
  ENSSSCT00000056062 ENTREZGENE
  ENSSSCT00000056062.3 UniProtKB/TrEMBL
  ENSSSCT00000063197.3 UniProtKB/TrEMBL
  ENSSSCT00000095573 ENTREZGENE
  ENSSSCT00000095573.1 UniProtKB/TrEMBL
  ENSSSCT00025077836.1 UniProtKB/TrEMBL
  ENSSSCT00030065155.1 UniProtKB/TrEMBL
  ENSSSCT00030065181.1 UniProtKB/TrEMBL
  ENSSSCT00030065259.1 UniProtKB/TrEMBL
  ENSSSCT00030065362.1 UniProtKB/TrEMBL
  ENSSSCT00030065392.1 UniProtKB/TrEMBL
  ENSSSCT00030065429.1 UniProtKB/TrEMBL
  ENSSSCT00035065188.1 UniProtKB/TrEMBL
  ENSSSCT00035065195.1 UniProtKB/TrEMBL
  ENSSSCT00035065202.1 UniProtKB/TrEMBL
  ENSSSCT00035065206.1 UniProtKB/TrEMBL
  ENSSSCT00040029316.1 UniProtKB/TrEMBL
  ENSSSCT00040029370.1 UniProtKB/TrEMBL
  ENSSSCT00040029397.1 UniProtKB/TrEMBL
  ENSSSCT00040029449.1 UniProtKB/TrEMBL
  ENSSSCT00045033431.1 UniProtKB/TrEMBL
  ENSSSCT00045033671.1 UniProtKB/TrEMBL
  ENSSSCT00045033764.1 UniProtKB/TrEMBL
  ENSSSCT00045033840.1 UniProtKB/TrEMBL
  ENSSSCT00045033910.1 UniProtKB/TrEMBL
  ENSSSCT00050036919.1 UniProtKB/TrEMBL
  ENSSSCT00050036937.1 UniProtKB/TrEMBL
  ENSSSCT00055027566.1 UniProtKB/TrEMBL
  ENSSSCT00055027649.1 UniProtKB/TrEMBL
  ENSSSCT00055027709.1 UniProtKB/TrEMBL
  ENSSSCT00055027807.1 UniProtKB/TrEMBL
  ENSSSCT00060075512.1 UniProtKB/TrEMBL
  ENSSSCT00060075528.1 UniProtKB/TrEMBL
  ENSSSCT00060075540.1 UniProtKB/TrEMBL
  ENSSSCT00065061134.1 UniProtKB/TrEMBL
  ENSSSCT00065061146.1 UniProtKB/TrEMBL
  ENSSSCT00065061160.1 UniProtKB/TrEMBL
  ENSSSCT00065061174.1 UniProtKB/TrEMBL
  ENSSSCT00070043408.1 UniProtKB/TrEMBL
  ENSSSCT00070043419.1 UniProtKB/TrEMBL
  ENSSSCT00070043426.1 UniProtKB/TrEMBL
  ENSSSCT00070043438.1 UniProtKB/TrEMBL
Gene3D-CATH 3.30.300.30 UniProtKB/TrEMBL
  3.40.50.12780 UniProtKB/TrEMBL
InterPro Ac_CoA_lig UniProtKB/TrEMBL
  ACAS_N UniProtKB/TrEMBL
  AMP-bd_C UniProtKB/TrEMBL
  AMP-bd_C_sf UniProtKB/TrEMBL
  AMP-binding_CS UniProtKB/TrEMBL
  AMP-dep_Synth/Lig UniProtKB/TrEMBL
  AMP-dep_Synthh-like_sf UniProtKB/TrEMBL
NCBI Gene ACSS1 ENTREZGENE
PANTHER ACETYL-COENZYME A SYNTHETASE UniProtKB/TrEMBL
  ACETYL-COENZYME A SYNTHETASE 2-LIKE, MITOCHONDRIAL UniProtKB/TrEMBL
Pfam ACAS_N UniProtKB/TrEMBL
  AMP-binding UniProtKB/TrEMBL
  AMP-binding_C UniProtKB/TrEMBL
PROSITE AMP_BINDING UniProtKB/TrEMBL
Superfamily-SCOP Acetyl-CoA synthetase-like UniProtKB/TrEMBL
UniProt A0A287AT39 ENTREZGENE, UniProtKB/TrEMBL
  A0A287B7Q9 ENTREZGENE, UniProtKB/TrEMBL
  A0A287BA23_PIG UniProtKB/TrEMBL
  A0A480WRN0 ENTREZGENE, UniProtKB/TrEMBL
  A0A480ZG17 ENTREZGENE, UniProtKB/TrEMBL
  A0A481B8E5 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1V1J2 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1V591_PIG UniProtKB/TrEMBL
  A0A4X1V5X6_PIG UniProtKB/TrEMBL
  A0A4X1V6Y3 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0UW35 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0WYY7_PIG UniProtKB/TrEMBL
  A0A8D0X2Y8_PIG UniProtKB/TrEMBL
  A0A8D0X3W5_PIG UniProtKB/TrEMBL
  A0A8D0X5A5_PIG UniProtKB/TrEMBL
  A0A8D1CA93_PIG UniProtKB/TrEMBL
  A0A8D1HUM9 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1LXF6 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1LXQ8_PIG UniProtKB/TrEMBL
  A0A8D1QMV3_PIG UniProtKB/TrEMBL
  A0A8D1QTS1 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1U2H3 ENTREZGENE, UniProtKB/TrEMBL
  A0A8W4FGC5_PIG UniProtKB/TrEMBL
VGNC ID VGNC:95732 ENTREZGENE