BAHD1 (bromo adjacent homology domain containing 1) - Rat Genome Database

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Gene: BAHD1 (bromo adjacent homology domain containing 1) Sus scrofa
Analyze
Symbol: BAHD1
Name: bromo adjacent homology domain containing 1
RGD ID: 13990432
Description: ENCODES a protein that exhibits chromatin binding (inferred); transcription cis-regulatory region binding (inferred); INVOLVED IN heterochromatin formation (inferred); negative regulation of DNA-templated transcription (inferred); ASSOCIATED WITH Bloom syndrome (ortholog); colorectal cancer (ortholog); genetic disease (ortholog); FOUND IN chromatin silencing complex (inferred); nucleoplasm (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: bromo adjacent homology domain-containing 1 protein
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1130,849,842 - 130,875,974 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11130,849,835 - 130,874,735 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21145,935,049 - 145,954,376 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
BAHD1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1130,849,842 - 130,875,974 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11130,849,835 - 130,874,735 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21145,935,049 - 145,954,376 (-)NCBISscrofa10.2Sscrofa10.2susScr3
BAHD1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381540,437,452 - 40,468,236 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1540,439,721 - 40,468,236 (+)EnsemblGRCh38hg38GRCh38
GRCh371540,731,956 - 40,760,435 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361538,520,703 - 38,547,733 (+)NCBINCBI36Build 36hg18NCBI36
Build 341538,520,702 - 38,547,720NCBI
Celera1517,499,558 - 17,526,585 (+)NCBICelera
Cytogenetic Map15q15.1NCBI
HuRef1517,594,508 - 17,604,299 (+)NCBIHuRef
CHM1_11540,853,604 - 40,880,604 (+)NCBICHM1_1
T2T-CHM13v2.01538,247,131 - 38,275,586 (+)NCBIT2T-CHM13v2.0
Bahd1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392118,730,817 - 118,755,009 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2118,730,858 - 118,755,009 (+)EnsemblGRCm39 Ensembl
GRCm382118,900,336 - 118,924,528 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2118,900,377 - 118,924,528 (+)EnsemblGRCm38mm10GRCm38
MGSCv372118,727,351 - 118,750,260 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362118,591,818 - 118,615,971 (+)NCBIMGSCv36mm8
Celera2120,067,400 - 120,076,094 (+)NCBICelera
Cytogenetic Map2E5NCBI
cM Map259.72NCBI
Bahd1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83126,341,853 - 126,368,281 (+)NCBIGRCr8
mRatBN7.23105,891,207 - 105,914,414 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3105,892,478 - 105,914,410 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.03110,708,790 - 110,732,038 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3110,723,481 - 110,732,060 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03117,246,896 - 117,269,975 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43105,429,028 - 105,437,536 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera3104,804,898 - 104,827,604 (+)NCBICelera
Cytogenetic Map3q35NCBI
Bahd1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554167,361,847 - 7,388,647 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554167,376,794 - 7,388,577 (+)NCBIChiLan1.0ChiLan1.0
BAHD1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21629,676,241 - 29,704,659 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11533,827,610 - 33,856,003 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01519,376,233 - 19,404,699 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11537,630,476 - 37,657,918 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1537,630,476 - 37,657,918 (+)Ensemblpanpan1.1panPan2
BAHD1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1307,609,087 - 7,638,880 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl307,613,345 - 7,638,880 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha307,666,894 - 7,692,594 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0307,738,977 - 7,764,672 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl307,739,249 - 7,764,664 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1307,663,249 - 7,688,948 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0307,769,314 - 7,794,987 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0307,898,180 - 7,923,883 (+)NCBIUU_Cfam_GSD_1.0
Bahd1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864086,053,454 - 86,079,681 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364713,902,625 - 3,927,829 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364713,902,558 - 3,927,746 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
BAHD1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12642,543,308 - 42,572,880 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2642,543,107 - 42,570,430 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604898,396,348 - 98,427,047 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Bahd1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248047,742,217 - 7,769,108 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248047,741,141 - 7,767,049 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in BAHD1
335 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium
Low 10 4 3 5 2 23 2 3 3
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSSSCT00000005271   ⟹   ENSSSCP00000005143
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1130,849,993 - 130,873,193 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000066319   ⟹   ENSSSCP00000040801
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1130,849,842 - 130,875,974 (-)Ensembl
RefSeq Acc Id: XM_013993174   ⟹   XP_013848628
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11130,849,835 - 130,858,656 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021097659   ⟹   XP_020953318
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11130,849,835 - 130,873,361 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021097670   ⟹   XP_020953329
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11130,849,835 - 130,873,441 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021097680   ⟹   XP_020953339
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11130,849,835 - 130,874,735 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021097688   ⟹   XP_020953347
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11130,849,843 - 130,873,558 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021097694   ⟹   XP_020953353
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11130,849,835 - 130,873,719 (-)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: XP_020953339   ⟸   XM_021097680
- Peptide Label: isoform X2
- UniProtKB: A0A8D1MYR6 (UniProtKB/TrEMBL),   A0A287AA78 (UniProtKB/TrEMBL),   A0A8D1W9R6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020953353   ⟸   XM_021097694
- Peptide Label: isoform X2
- UniProtKB: A0A8D1MYR6 (UniProtKB/TrEMBL),   A0A287AA78 (UniProtKB/TrEMBL),   A0A8D1W9R6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020953329   ⟸   XM_021097670
- Peptide Label: isoform X2
- UniProtKB: A0A8D1MYR6 (UniProtKB/TrEMBL),   A0A287AA78 (UniProtKB/TrEMBL),   A0A8D1W9R6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020953318   ⟸   XM_021097659
- Peptide Label: isoform X2
- UniProtKB: A0A8D1MYR6 (UniProtKB/TrEMBL),   A0A287AA78 (UniProtKB/TrEMBL),   A0A8D1W9R6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013848628   ⟸   XM_013993174
- Peptide Label: isoform X1
- UniProtKB: A0A8D1ZYT5 (UniProtKB/TrEMBL),   F1SSR6 (UniProtKB/TrEMBL),   A0A8D1W972 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020953347   ⟸   XM_021097688
- Peptide Label: isoform X3
- UniProtKB: A0A480Y4G1 (UniProtKB/TrEMBL),   A0A8D1W9R6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000005143   ⟸   ENSSSCT00000005271
RefSeq Acc Id: ENSSSCP00000040801   ⟸   ENSSSCT00000066319
Protein Domains
BAH


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000004772 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00015031781 UniProtKB/TrEMBL
  ENSSSCG00025012759 UniProtKB/TrEMBL
  ENSSSCG00030032191 UniProtKB/TrEMBL
  ENSSSCG00035060800 UniProtKB/TrEMBL
  ENSSSCG00040038127 UniProtKB/TrEMBL
  ENSSSCG00045013776 UniProtKB/TrEMBL
  ENSSSCG00050049461 UniProtKB/TrEMBL
  ENSSSCG00055020801 UniProtKB/TrEMBL
  ENSSSCG00060060490 UniProtKB/TrEMBL
  ENSSSCG00065068395 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000005271 ENTREZGENE
  ENSSSCT00000005271.5 UniProtKB/TrEMBL
  ENSSSCT00000066319 ENTREZGENE
  ENSSSCT00000066319.3 UniProtKB/TrEMBL
  ENSSSCT00015042038.1 UniProtKB/TrEMBL
  ENSSSCT00015042374.1 UniProtKB/TrEMBL
  ENSSSCT00025016916.1 UniProtKB/TrEMBL
  ENSSSCT00025016977.1 UniProtKB/TrEMBL
  ENSSSCT00030044525.1 UniProtKB/TrEMBL
  ENSSSCT00035081645.1 UniProtKB/TrEMBL
  ENSSSCT00040051026.1 UniProtKB/TrEMBL
  ENSSSCT00045023538.1 UniProtKB/TrEMBL
  ENSSSCT00045023564.1 UniProtKB/TrEMBL
  ENSSSCT00050067287.1 UniProtKB/TrEMBL
  ENSSSCT00050067296.1 UniProtKB/TrEMBL
  ENSSSCT00055040946.1 UniProtKB/TrEMBL
  ENSSSCT00060082517.1 UniProtKB/TrEMBL
  ENSSSCT00060082543.1 UniProtKB/TrEMBL
  ENSSSCT00065093918.1 UniProtKB/TrEMBL
  ENSSSCT00065093925.1 UniProtKB/TrEMBL
Gene3D-CATH 2.30.30.490 UniProtKB/TrEMBL
InterPro BAH_dom UniProtKB/TrEMBL
  BAH_sf UniProtKB/TrEMBL
KEGG Report ssc:100155635 UniProtKB/TrEMBL
NCBI Gene BAHD1 ENTREZGENE
PANTHER BROMO ADJACENT HOMOLOGY DOMAIN-CONTAINING 1 PROTEIN UniProtKB/TrEMBL
  BROMO ADJACENT HOMOLOGY DOMAIN-CONTAINING 1 PROTEIN UniProtKB/TrEMBL
Pfam BAH UniProtKB/TrEMBL
PROSITE BAH UniProtKB/TrEMBL
SMART BAH UniProtKB/TrEMBL
UniProt A0A287AA78 ENTREZGENE, UniProtKB/TrEMBL
  A0A480Y4G1 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1MYR6 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1W972 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1W9R6 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1ZYT5 ENTREZGENE, UniProtKB/TrEMBL
  F1SSR6 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:85747 ENTREZGENE