LOC396700 (tryptase) - Rat Genome Database

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Gene: LOC396700 (tryptase) Sus scrofa
Analyze
Symbol: LOC396700
Name: tryptase
RGD ID: 13989270
Description: ENCODES a protein that exhibits glycosaminoglycan binding (inferred); heparin binding (inferred); serine-type endopeptidase activity (inferred); INVOLVED IN proteolysis (inferred); FOUND IN extracellular matrix (inferred); extracellular space (inferred)
Type: protein-coding
RefSeq Status: PROVISIONAL
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1340,596,408 - 40,598,426 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2341,925,392 - 41,927,410 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
proteolysis  (IBA,IEA)

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074  


Genomics

Variants

.
Variants in LOC396700
17 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system hemolymphoid system nervous system renal system respiratory system
High
Medium
Low 5 1 2
Below cutoff 4 1 3 1 1 1

Sequence


Reference Sequences
RefSeq Acc Id: NM_213794   ⟹   NP_998959
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1340,596,408 - 40,598,426 (+)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: NP_998959   ⟸   NM_213794
- Peptide Label: precursor
- UniProtKB: Q8SQ44 (UniProtKB/TrEMBL),   A0A8D1WPX6 (UniProtKB/TrEMBL),   A0A8D1DVM1 (UniProtKB/TrEMBL)
- Sequence:
Protein Domains
Peptidase S1


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000008032 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00005045055 UniProtKB/TrEMBL
  ENSSSCG00015022246 UniProtKB/TrEMBL
  ENSSSCG00025027504 UniProtKB/TrEMBL
  ENSSSCG00030071295 UniProtKB/TrEMBL
  ENSSSCG00035057524 UniProtKB/TrEMBL
  ENSSSCG00040021973 UniProtKB/TrEMBL
  ENSSSCG00045039105 UniProtKB/TrEMBL
  ENSSSCG00050078790 UniProtKB/TrEMBL
  ENSSSCG00055030896 UniProtKB/TrEMBL
  ENSSSCG00060072255 UniProtKB/TrEMBL
  ENSSSCG00065058704 UniProtKB/TrEMBL
  ENSSSCG00070009022 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000008801 ENTREZGENE
  ENSSSCT00000008801.4 UniProtKB/TrEMBL
  ENSSSCT00005072712.1 UniProtKB/TrEMBL
  ENSSSCT00005072724.1 UniProtKB/TrEMBL
  ENSSSCT00015029413.1 UniProtKB/TrEMBL
  ENSSSCT00025037261.1 UniProtKB/TrEMBL
  ENSSSCT00030099792.1 UniProtKB/TrEMBL
  ENSSSCT00035076932.1 UniProtKB/TrEMBL
  ENSSSCT00035076940.1 UniProtKB/TrEMBL
  ENSSSCT00040029472.1 UniProtKB/TrEMBL
  ENSSSCT00045067970.1 UniProtKB/TrEMBL
  ENSSSCT00050108693.1 UniProtKB/TrEMBL
  ENSSSCT00055061659.1 UniProtKB/TrEMBL
  ENSSSCT00060098738.1 UniProtKB/TrEMBL
  ENSSSCT00065080317.1 UniProtKB/TrEMBL
  ENSSSCT00070017656.1 UniProtKB/TrEMBL
Gene3D-CATH 2.40.10.10 UniProtKB/TrEMBL
InterPro Peptidase_S1_PA UniProtKB/TrEMBL
  Peptidase_S1_PA_chymotrypsin UniProtKB/TrEMBL
  Peptidase_S1A UniProtKB/TrEMBL
  Trypsin_dom UniProtKB/TrEMBL
  TRYPSIN_HIS UniProtKB/TrEMBL
  TRYPSIN_SER UniProtKB/TrEMBL
KEGG Report ssc:396700 UniProtKB/TrEMBL
NCBI Gene LOC396700 ENTREZGENE
PANTHER MAST CELL PROTEASE-11 UniProtKB/TrEMBL
  TRANSMEMBRANE PROTEASE SERINE UniProtKB/TrEMBL
  TRYPTASE DELTA 1 UniProtKB/TrEMBL
  TRYPTASE-RELATED UniProtKB/TrEMBL
Pfam Trypsin UniProtKB/TrEMBL
PRINTS CHYMOTRYPSIN UniProtKB/TrEMBL
PROSITE TRYPSIN_DOM UniProtKB/TrEMBL
  TRYPSIN_HIS UniProtKB/TrEMBL
  TRYPSIN_SER UniProtKB/TrEMBL
SMART Tryp_SPc UniProtKB/TrEMBL
Superfamily-SCOP SSF50494 UniProtKB/TrEMBL
UniProt A0A4X1TFV3_PIG UniProtKB/TrEMBL
  A0A8D0M5M0_PIG UniProtKB/TrEMBL
  A0A8D1ALF0_PIG UniProtKB/TrEMBL
  A0A8D1DVM1 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1WPX6 ENTREZGENE, UniProtKB/TrEMBL
  F1RFZ4_PIG UniProtKB/TrEMBL
  Q8SQ44 ENTREZGENE, UniProtKB/TrEMBL