SLC3A2 (solute carrier family 3 member 2) - Rat Genome Database

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Gene: SLC3A2 (solute carrier family 3 member 2) Sus scrofa
Analyze
Symbol: SLC3A2
Name: solute carrier family 3 member 2
RGD ID: 13988335
Description: ENCODES a protein that exhibits neutral L-amino acid transmembrane transporter activity (ortholog); INVOLVED IN cellular response to glucose starvation (ortholog); neutral amino acid transport (ortholog); response to exogenous dsRNA (ortholog); PARTICIPATES IN amiloride pharmacodynamics pathway; bendroflumethiazide pharmacodynamics pathway; bumetanide pharmacodynamics pathway; ASSOCIATED WITH adenoid cystic carcinoma (ortholog); autism spectrum disorder (ortholog); intellectual disability (ortholog); FOUND IN basal plasma membrane (ortholog); synapse (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: 4F2 cell-surface antigen heavy chain; solute carrier family 3 (activators of dibasic and neutral amino acid transport), member 2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl28,892,089 - 8,919,072 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.128,892,071 - 8,919,070 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.228,245,279 - 8,273,049 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References
Additional References at PubMed
PMID:14681463   PMID:17145712   PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
SLC3A2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl28,892,089 - 8,919,072 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.128,892,071 - 8,919,070 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.228,245,279 - 8,273,049 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SLC3A2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381162,856,109 - 62,888,860 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1162,856,004 - 62,888,880 (+)EnsemblGRCh38hg38GRCh38
GRCh371162,623,581 - 62,656,332 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361162,380,094 - 62,412,929 (+)NCBINCBI36Build 36hg18NCBI36
Build 341162,380,149 - 62,412,840NCBI
Celera1159,946,914 - 59,979,926 (+)NCBICelera
Cytogenetic Map11q12.3NCBI
HuRef1158,952,521 - 58,985,401 (+)NCBIHuRef
CHM1_11162,506,504 - 62,539,366 (+)NCBICHM1_1
T2T-CHM13v2.01162,845,504 - 62,878,241 (+)NCBIT2T-CHM13v2.0
Slc3a2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39198,684,931 - 8,700,733 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl198,684,246 - 8,700,733 (-)EnsemblGRCm39 Ensembl
GRCm38198,706,882 - 8,723,369 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl198,706,882 - 8,723,369 (-)EnsemblGRCm38mm10GRCm38
MGSCv37198,781,372 - 8,797,859 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36198,773,927 - 8,780,919 (-)NCBIMGSCv36mm8
Celera198,465,148 - 8,481,790 (-)NCBICelera
Cytogenetic Map19ANCBI
cM Map195.44NCBI
Slc3a2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81215,033,601 - 215,048,064 (-)NCBIGRCr8
mRatBN7.21205,604,468 - 205,618,931 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1205,604,468 - 205,618,931 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1214,010,415 - 214,024,888 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01221,048,034 - 221,062,497 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01213,740,736 - 213,755,199 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01224,906,566 - 224,921,029 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1224,906,554 - 224,921,092 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01231,843,822 - 231,858,285 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41211,375,889 - 211,390,313 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11211,534,318 - 211,548,743 (-)NCBI
Celera1203,117,365 - 203,131,828 (-)NCBICelera
Cytogenetic Map1q43NCBI
Slc3a2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955599376,245 - 391,311 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955599376,133 - 391,434 (-)NCBIChiLan1.0ChiLan1.0
SLC3A2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2964,081,951 - 64,111,370 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11165,123,352 - 65,156,538 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01158,212,395 - 58,241,686 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11161,565,664 - 61,594,579 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1161,565,680 - 61,594,579 (+)Ensemblpanpan1.1panPan2
SLC3A2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11853,810,468 - 53,819,021 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1853,810,398 - 53,819,021 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1852,416,355 - 52,424,896 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01854,862,432 - 54,870,971 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1854,862,008 - 54,870,971 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11853,959,818 - 53,968,341 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01853,533,954 - 53,542,486 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01854,325,863 - 54,334,403 (-)NCBIUU_Cfam_GSD_1.0
Slc3a2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494710,311,055 - 10,327,851 (-)NCBIHiC_Itri_2
SpeTri2.0NW_004936581424,801 - 441,592 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLC3A2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1111,011,351 - 11,050,494 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl111,008,120 - 11,050,298 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666038108,363,791 - 108,393,242 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Slc3a2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046249261,301,584 - 1,315,707 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046249261,301,866 - 1,314,598 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in SLC3A2
1488 total Variants

Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
endoderm
hemolymphoid system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
10 4 23 3 2 5 14 12 23 3 6 3

Sequence


Ensembl Acc Id: ENSSSCT00000028449   ⟹   ENSSSCP00000021299
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl28,892,089 - 8,919,072 (-)Ensembl
Ensembl Acc Id: ENSSSCT00000074494   ⟹   ENSSSCP00000072047
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl28,892,090 - 8,919,065 (-)Ensembl
Ensembl Acc Id: ENSSSCT00000076199   ⟹   ENSSSCP00000071404
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl28,892,093 - 8,918,896 (-)Ensembl
RefSeq Acc Id: XM_003353809   ⟹   XP_003353857
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.128,892,071 - 8,919,070 (-)NCBI
Sequence:
RefSeq Acc Id: XP_003353857   ⟸   XM_003353809
- UniProtKB: A0A480IRW3 (UniProtKB/TrEMBL),   A0A8D0TEG6 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSSSCP00000072047   ⟸   ENSSSCT00000074494
Ensembl Acc Id: ENSSSCP00000071404   ⟸   ENSSSCT00000076199
Ensembl Acc Id: ENSSSCP00000021299   ⟸   ENSSSCT00000028449

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000022404 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00015069374 UniProtKB/TrEMBL
  ENSSSCG00025073640 UniProtKB/TrEMBL
  ENSSSCG00030011925 UniProtKB/TrEMBL
  ENSSSCG00035046053 UniProtKB/TrEMBL
  ENSSSCG00040044713 UniProtKB/TrEMBL
  ENSSSCG00045033835 UniProtKB/TrEMBL
  ENSSSCG00055004305 UniProtKB/TrEMBL
  ENSSSCG00060036737 UniProtKB/TrEMBL
  ENSSSCG00065007473 UniProtKB/TrEMBL
  ENSSSCG00070025003 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000028449 ENTREZGENE
  ENSSSCT00000028449.4 UniProtKB/TrEMBL
  ENSSSCT00000074494.1 UniProtKB/TrEMBL
  ENSSSCT00000076199.2 UniProtKB/TrEMBL
  ENSSSCT00015092930.1 UniProtKB/TrEMBL
  ENSSSCT00015093047.1 UniProtKB/TrEMBL
  ENSSSCT00015093114.1 UniProtKB/TrEMBL
  ENSSSCT00015093312.1 UniProtKB/TrEMBL
  ENSSSCT00025101398.1 UniProtKB/TrEMBL
  ENSSSCT00025101644.1 UniProtKB/TrEMBL
  ENSSSCT00025101762.1 UniProtKB/TrEMBL
  ENSSSCT00030016346.1 UniProtKB/TrEMBL
  ENSSSCT00030016353.1 UniProtKB/TrEMBL
  ENSSSCT00030016360.1 UniProtKB/TrEMBL
  ENSSSCT00035061222.1 UniProtKB/TrEMBL
  ENSSSCT00035061231.1 UniProtKB/TrEMBL
  ENSSSCT00035061235.1 UniProtKB/TrEMBL
  ENSSSCT00035061286.1 UniProtKB/TrEMBL
  ENSSSCT00040059984.1 UniProtKB/TrEMBL
  ENSSSCT00040060219.1 UniProtKB/TrEMBL
  ENSSSCT00045057869.1 UniProtKB/TrEMBL
  ENSSSCT00045057994.1 UniProtKB/TrEMBL
  ENSSSCT00045058084.1 UniProtKB/TrEMBL
  ENSSSCT00055008496.1 UniProtKB/TrEMBL
  ENSSSCT00055008505.1 UniProtKB/TrEMBL
  ENSSSCT00060049782.1 UniProtKB/TrEMBL
  ENSSSCT00060049791.1 UniProtKB/TrEMBL
  ENSSSCT00065010030.1 UniProtKB/TrEMBL
  ENSSSCT00065010040.1 UniProtKB/TrEMBL
  ENSSSCT00065010047.1 UniProtKB/TrEMBL
  ENSSSCT00065010056.1 UniProtKB/TrEMBL
  ENSSSCT00070049973.1 UniProtKB/TrEMBL
  ENSSSCT00070049977.1 UniProtKB/TrEMBL
  ENSSSCT00070049979.1 UniProtKB/TrEMBL
  ENSSSCT00070049982.1 UniProtKB/TrEMBL
  ENSSSCT00070049984.1 UniProtKB/TrEMBL
  ENSSSCT00070049987.1 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.1180 UniProtKB/TrEMBL
  Glycosidases UniProtKB/TrEMBL
InterPro Glyco_hydro_13_cat_dom UniProtKB/TrEMBL
  Glyco_hydro_b UniProtKB/TrEMBL
  Glycoside_hydrolase_SF UniProtKB/TrEMBL
  SLC3A2 UniProtKB/TrEMBL
  SLC3A2_N UniProtKB/TrEMBL
KEGG Report ssc:100144589 UniProtKB/TrEMBL
NCBI Gene SLC3A2 ENTREZGENE
PANTHER 4F2 CELL-SURFACE ANTIGEN HEAVY CHAIN UniProtKB/TrEMBL
  PTHR46673 UniProtKB/TrEMBL
Pfam Alpha-amylase UniProtKB/TrEMBL
  SLC3A2_N UniProtKB/TrEMBL
SMART Aamy UniProtKB/TrEMBL
Superfamily-SCOP Glycosyl hydrolase domain UniProtKB/TrEMBL
  SSF51445 UniProtKB/TrEMBL
UniProt A0A480IRW3 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1VJV4_PIG UniProtKB/TrEMBL
  A0A4X1VJV9_PIG UniProtKB/TrEMBL
  A0A4X1VK65_PIG UniProtKB/TrEMBL
  A0A4X1VK70_PIG UniProtKB/TrEMBL
  A0A4X1VK75_PIG UniProtKB/TrEMBL
  A0A4X1VMK9_PIG UniProtKB/TrEMBL
  A0A5G2R2T5_PIG UniProtKB/TrEMBL
  A0A5G2RCQ0_PIG UniProtKB/TrEMBL
  A0A8D0TEG6 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0TJC2_PIG UniProtKB/TrEMBL
  A0A8D0UB31_PIG UniProtKB/TrEMBL
  A0A8D0VJV6_PIG UniProtKB/TrEMBL
  A0A8D0VJX2_PIG UniProtKB/TrEMBL
  A0A8D0VLQ2_PIG UniProtKB/TrEMBL
  A0A8D0ZWE3_PIG UniProtKB/TrEMBL
  A0A8D1CVQ7_PIG UniProtKB/TrEMBL
  A0A8D1ENX0_PIG UniProtKB/TrEMBL
  A0A8D1ER13_PIG UniProtKB/TrEMBL
  A0A8D1IVD4_PIG UniProtKB/TrEMBL
  A0A8D1PLQ2_PIG UniProtKB/TrEMBL
  A0A8D1XIQ2_PIG UniProtKB/TrEMBL
  B2D2K7_PIG UniProtKB/TrEMBL
  I3LB80_PIG UniProtKB/TrEMBL
VGNC ID VGNC:93112 ENTREZGENE