RBM18 (RNA binding motif protein 18) - Rat Genome Database

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Gene: RBM18 (RNA binding motif protein 18) Sus scrofa
Analyze
Symbol: RBM18
Name: RNA binding motif protein 18
RGD ID: 13987484
Description: ENCODES a protein that exhibits nucleic acid binding (inferred); RNA binding (inferred); ASSOCIATED WITH genetic disease (ortholog); FOUND IN cytosol (inferred); intercellular bridge (inferred); nucleoplasm (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: probable RNA-binding protein 18
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1262,333,533 - 262,356,222 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11262,333,529 - 262,356,280 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21294,633,294 - 294,656,005 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:14681463   PMID:15679890   PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
RBM18
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1262,333,533 - 262,356,222 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11262,333,529 - 262,356,280 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21294,633,294 - 294,656,005 (-)NCBISscrofa10.2Sscrofa10.2susScr3
RBM18
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh389122,237,622 - 122,264,840 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl9122,237,622 - 122,264,840 (-)EnsemblGRCh38hg38GRCh38
GRCh379124,999,901 - 125,027,119 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 369124,043,604 - 124,066,911 (-)NCBINCBI36Build 36hg18NCBI36
Build 349122,083,337 - 122,106,644NCBI
Celera995,650,145 - 95,675,469 (-)NCBICelera
Cytogenetic Map9q33.2NCBI
HuRef994,616,513 - 94,641,838 (-)NCBIHuRef
CHM1_19125,149,891 - 125,175,212 (-)NCBICHM1_1
T2T-CHM13v2.09134,435,123 - 134,462,358 (-)NCBIT2T-CHM13v2.0
Rbm18
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39236,006,091 - 36,026,716 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl236,006,091 - 36,026,785 (-)EnsemblGRCm39 Ensembl
GRCm38236,116,079 - 36,136,704 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl236,116,079 - 36,136,773 (-)EnsemblGRCm38mm10GRCm38
MGSCv37235,971,599 - 35,992,224 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36235,938,090 - 35,958,620 (-)NCBIMGSCv36mm8
Celera235,819,723 - 35,840,373 (-)NCBICelera
Cytogenetic Map2BNCBI
cM Map224.19NCBI
Rbm18
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8339,864,739 - 39,884,577 (-)NCBIGRCr8
mRatBN7.2319,467,333 - 19,487,171 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl319,467,335 - 19,487,178 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx322,545,823 - 22,565,630 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0331,130,753 - 31,150,560 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0329,377,908 - 29,397,708 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0315,444,043 - 15,463,881 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl315,444,043 - 15,463,881 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0320,753,255 - 20,773,093 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4315,227,144 - 15,246,982 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1315,123,517 - 15,143,361 (-)NCBI
Celera314,179,164 - 14,198,986 (-)NCBICelera
Cytogenetic Map3p11NCBI
Rbm18
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554195,800,074 - 5,822,378 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554195,800,761 - 5,822,378 (+)NCBIChiLan1.0ChiLan1.0
RBM18
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21117,081,506 - 17,106,431 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1917,083,855 - 17,108,780 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0993,364,947 - 93,389,862 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.19121,705,478 - 121,730,801 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl9121,705,478 - 121,730,801 (-)Ensemblpanpan1.1panPan2
RBM18
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1960,314,598 - 60,338,593 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl960,314,601 - 60,336,775 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha959,510,046 - 59,534,015 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0961,229,645 - 61,253,709 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl961,229,366 - 61,253,702 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1960,003,894 - 60,027,929 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0960,320,187 - 60,344,221 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0960,408,873 - 60,432,925 (+)NCBIUU_Cfam_GSD_1.0
Rbm18
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947190,859,565 - 190,881,093 (-)NCBIHiC_Itri_2
SpeTri2.0NW_00493648710,629,550 - 10,649,594 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RBM18
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11217,330,115 - 17,355,517 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366603525,693,416 - 25,719,259 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rbm18
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476013,032,021 - 13,054,919 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476013,032,036 - 13,054,919 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in RBM18
576 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 10 2 2 5 2 19 2 1 3
Low 2 1 4 2
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSSSCT00000047884   ⟹   ENSSSCP00000031659
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1262,333,533 - 262,356,222 (-)Ensembl
RefSeq Acc Id: XM_001925796   ⟹   XP_001925831
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11262,333,529 - 262,356,242 (-)NCBI
Sequence:
RefSeq Acc Id: XM_001925816   ⟹   XP_001925851
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11262,333,529 - 262,356,280 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005654533   ⟹   XP_005654590
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11262,333,529 - 262,356,257 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013986488   ⟹   XP_013841942
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11262,333,529 - 262,356,216 (-)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: XP_001925851   ⟸   XM_001925816
- Peptide Label: isoform X1
- UniProtKB: F1SLQ8 (UniProtKB/TrEMBL),   A0A4X1UI37 (UniProtKB/TrEMBL),   A0A286ZJA5 (UniProtKB/TrEMBL),   A0A8D1QU84 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005654590   ⟸   XM_005654533
- Peptide Label: isoform X1
- UniProtKB: F1SLQ8 (UniProtKB/TrEMBL),   A0A4X1UI37 (UniProtKB/TrEMBL),   A0A286ZJA5 (UniProtKB/TrEMBL),   A0A8D1QU84 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_001925831   ⟸   XM_001925796
- Peptide Label: isoform X1
- UniProtKB: F1SLQ8 (UniProtKB/TrEMBL),   A0A4X1UI37 (UniProtKB/TrEMBL),   A0A286ZJA5 (UniProtKB/TrEMBL),   A0A8D1QU84 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013841942   ⟸   XM_013986488
- Peptide Label: isoform X2
- UniProtKB: A0A480Z5V7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000031659   ⟸   ENSSSCT00000047884
Protein Domains
RRM


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000030089 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00005037473 UniProtKB/TrEMBL
  ENSSSCG00015060671 UniProtKB/TrEMBL
  ENSSSCG00025012925 UniProtKB/TrEMBL
  ENSSSCG00030045577 UniProtKB/TrEMBL
  ENSSSCG00035026254 UniProtKB/TrEMBL
  ENSSSCG00040057710 UniProtKB/TrEMBL
  ENSSSCG00045037568 UniProtKB/TrEMBL
  ENSSSCG00050040937 UniProtKB/TrEMBL
  ENSSSCG00055014591 UniProtKB/TrEMBL
  ENSSSCG00060003852 UniProtKB/TrEMBL
  ENSSSCG00065000647 UniProtKB/TrEMBL
  ENSSSCG00070017966 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000047884 ENTREZGENE
  ENSSSCT00000047884.2 UniProtKB/TrEMBL
  ENSSSCT00005059987.1 UniProtKB/TrEMBL
  ENSSSCT00015081041.1 UniProtKB/TrEMBL
  ENSSSCT00025017124.1 UniProtKB/TrEMBL
  ENSSSCT00030063594.1 UniProtKB/TrEMBL
  ENSSSCT00035034623.1 UniProtKB/TrEMBL
  ENSSSCT00035034626.1 UniProtKB/TrEMBL
  ENSSSCT00040078234.1 UniProtKB/TrEMBL
  ENSSSCT00045064850.1 UniProtKB/TrEMBL
  ENSSSCT00050055459.1 UniProtKB/TrEMBL
  ENSSSCT00055028774.1 UniProtKB/TrEMBL
  ENSSSCT00060004781.1 UniProtKB/TrEMBL
  ENSSSCT00065000754.1 UniProtKB/TrEMBL
  ENSSSCT00070035466.1 UniProtKB/TrEMBL
  ENSSSCT00070035473.1 UniProtKB/TrEMBL
Gene3D-CATH 3.30.70.330 UniProtKB/TrEMBL
InterPro Nucleotide-bd_a/b_plait_sf UniProtKB/TrEMBL
  RBD_domain_sf UniProtKB/TrEMBL
  RBM18_RRM UniProtKB/TrEMBL
  RRM_dom UniProtKB/TrEMBL
KEGG Report ssc:100154045 UniProtKB/TrEMBL
NCBI Gene RBM18 ENTREZGENE
PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN UniProtKB/TrEMBL
  RNA-BINDING PROTEIN 18-RELATED UniProtKB/TrEMBL
Pfam RRM_1 UniProtKB/TrEMBL
PROSITE RRM UniProtKB/TrEMBL
SMART RRM UniProtKB/TrEMBL
Superfamily-SCOP SSF54928 UniProtKB/TrEMBL
UniProt A0A286ZJA5 ENTREZGENE, UniProtKB/TrEMBL
  A0A480Z5V7 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1UI37 ENTREZGENE
  A0A8D1QU84 ENTREZGENE, UniProtKB/TrEMBL
  F1SLQ8 ENTREZGENE
UniProt Secondary A0A4X1UI37 UniProtKB/TrEMBL
  F1SLQ8 UniProtKB/TrEMBL
VGNC ID VGNC:92149 ENTREZGENE