CHST3 (carbohydrate sulfotransferase 3) - Rat Genome Database
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Gene: CHST3 (carbohydrate sulfotransferase 3) Sus scrofa
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Symbol: CHST3
Name: carbohydrate sulfotransferase 3
RGD ID: 13987059
Description: ENCODES a protein that exhibits chondroitin 6-sulfotransferase activity (ortholog); proteoglycan sulfotransferase activity (ortholog); INVOLVED IN chondroitin sulfate biosynthetic process (ortholog); peripheral nervous system axon regeneration (ortholog); positive regulation of cellular component movement (ortholog); ASSOCIATED WITH bone development disease (ortholog); Larsen syndrome (ortholog); Larsen-like syndrome B3GAT3 type (ortholog); FOUND IN Golgi membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Also known as: carbohydrate (chondroitin 6) sulfotransferase 3
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1474,850,931 - 74,891,529 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11474,850,931 - 74,891,527 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21480,739,187 - 80,779,620 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

Genomics

Comparative Map Data
CHST3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1474,850,931 - 74,891,529 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11474,850,931 - 74,891,527 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21480,739,187 - 80,779,620 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CHST3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1071,964,395 - 72,013,558 (+)EnsemblGRCh38hg38GRCh38
GRCh381071,964,395 - 72,013,562 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh371073,724,153 - 73,773,316 (+)NCBIGRCh37GRCh37hg19GRCh37
GRCh371073,724,120 - 73,773,322 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361073,394,126 - 73,443,318 (+)NCBINCBI36hg18NCBI36
Build 341073,394,125 - 73,443,318NCBI
Celera1067,007,692 - 67,056,893 (+)NCBI
Cytogenetic Map10q22.1NCBI
HuRef1067,718,863 - 67,768,083 (+)NCBIHuRef
CHM1_11074,006,249 - 74,055,464 (+)NCBICHM1_1
Chst3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391060,017,349 - 60,057,936 (-)NCBIGRCm39mm39
GRCm381060,181,527 - 60,222,114 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1060,181,532 - 60,219,260 (-)EnsemblGRCm38mm10GRCm38
MGSCv371059,644,275 - 59,682,008 (-)NCBIGRCm37mm9NCBIm37
MGSCv361059,576,891 - 59,584,064 (-)NCBImm8
Celera1061,277,814 - 61,316,112 (-)NCBICelera
Cytogenetic Map10B4NCBI
Chst3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.22028,114,387 - 28,152,046 (-)NCBI
Rnor_6.0 Ensembl2029,731,816 - 29,738,506 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.02029,731,828 - 29,768,656 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.02031,532,769 - 31,569,063 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42027,480,448 - 27,482,990 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.12027,494,247 - 27,496,790 (-)NCBI
Celera2029,558,419 - 29,560,961 (-)NCBICelera
Cytogenetic Map20q11NCBI
Chst3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543719,563,088 - 19,569,889 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495543719,563,645 - 19,605,747 (-)NCBIChiLan1.0ChiLan1.0
CHST3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11070,951,211 - 71,000,022 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1070,951,190 - 70,994,936 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01068,427,305 - 68,476,512 (+)NCBIMhudiblu_PPA_v0panPan3
CHST3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl422,691,336 - 22,694,254 (+)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.1422,668,430 - 22,699,157 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Chst3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_0049365216,864,456 - 6,900,122 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CHST3
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1959,292,705 - 59,295,821 (-)NCBI
ChlSab1.1 Ensembl959,293,158 - 59,300,866 (-)Ensembl
Chst3
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247545,800,240 - 5,832,290 (+)NCBI


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium
Low 9 4 3 5 2 23 1 3 3
Below cutoff 1 1

Sequence


Reference Sequences
RefSeq Acc Id: ENSSSCT00000060717   ⟹   ENSSSCP00000039434
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1474,850,931 - 74,891,529 (+)Ensembl
RefSeq Acc Id: XM_001928637   ⟹   XP_001928672
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11474,850,931 - 74,891,527 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005671049   ⟹   XP_005671106
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11474,851,065 - 74,891,527 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_001928672 (Get FASTA)   NCBI Sequence Viewer  
  XP_005671106 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_001928672   ⟸   XM_001928637
- UniProtKB: I3LU13 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005671106   ⟸   XM_005671049
- UniProtKB: I3LU13 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000039434   ⟸   ENSSSCT00000060717
Protein Domains
Sulfotransfer_1


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000023662 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00070007211 UniProtKB/TrEMBL
Ensembl Protein ENSSSCP00000039434 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCP00070011431 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000060717 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCT00070013870 UniProtKB/TrEMBL
InterPro Carbohydrate_sulfotransferase UniProtKB/TrEMBL
  P-loop_NTPase UniProtKB/TrEMBL
  Sulfotransferase_dom UniProtKB/TrEMBL
KEGG Report ssc:100151968 UniProtKB/TrEMBL
NCBI Gene CHST3 ENTREZGENE
Pfam Sulfotransfer_1 UniProtKB/TrEMBL
PIRSF Carbohydrate_sulfotransferase UniProtKB/TrEMBL
Superfamily-SCOP SSF52540 UniProtKB/TrEMBL
UniProt A0A4X1T9E4_PIG UniProtKB/TrEMBL
  I3LU13 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:86679 ENTREZGENE