RPE65 (retinoid isomerohydrolase RPE65) - Rat Genome Database

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Gene: RPE65 (retinoid isomerohydrolase RPE65) Sus scrofa
Analyze
Symbol: RPE65
Name: retinoid isomerohydrolase RPE65
RGD ID: 13985629
Description: ENCODES a protein that exhibits all-trans-retinyl-ester hydrolase, 11-cis retinol forming activity (ortholog); INVOLVED IN camera-type eye development (ortholog); circadian rhythm (ortholog); neural retina development (ortholog); PARTICIPATES IN altered retinoid cycle metabolic pathway; retinitis pigmentosa pathway; retinoid cycle metabolic pathway; ASSOCIATED WITH adrenocorticotropic hormone deficiency (ortholog); autistic disorder (ortholog); basal cell carcinoma (ortholog); FOUND IN cell body (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: retinal pigment epithelium-specific 65 kDa protein; retinal pigment epithelium-specific protein 65kDa; retinoid isomerohydrolase; RPE65, retinoid isomerohydrolase
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl6144,206,078 - 144,229,467 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.16144,206,078 - 144,229,471 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.26133,491,901 - 133,514,217 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:14681463   PMID:17145712   PMID:30032202  


Genomics

Comparative Map Data
RPE65
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl6144,206,078 - 144,229,467 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.16144,206,078 - 144,229,471 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.26133,491,901 - 133,514,217 (+)NCBISscrofa10.2Sscrofa10.2susScr3
RPE65
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38168,428,822 - 68,449,954 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl168,428,822 - 68,449,954 (-)EnsemblGRCh38hg38GRCh38
GRCh37168,894,505 - 68,915,637 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36168,667,095 - 68,688,230 (-)NCBINCBI36Build 36hg18NCBI36
Build 34168,606,465 - 68,627,663NCBI
Celera167,184,748 - 67,205,854 (-)NCBICelera
Cytogenetic Map1p31.3NCBI
HuRef167,004,313 - 67,025,452 (-)NCBIHuRef
CHM1_1169,009,866 - 69,031,001 (-)NCBICHM1_1
T2T-CHM13v2.0168,306,207 - 68,327,339 (-)NCBIT2T-CHM13v2.0
Rpe65
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm393159,304,712 - 159,330,944 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl3159,304,812 - 159,330,958 (+)EnsemblGRCm39 Ensembl
GRCm383159,599,075 - 159,625,307 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl3159,599,175 - 159,625,321 (+)EnsemblGRCm38mm10GRCm38
MGSCv373159,262,145 - 159,288,271 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv363159,534,526 - 159,560,092 (+)NCBIMGSCv36mm8
Celera3166,038,618 - 166,064,587 (+)NCBICelera
Cytogenetic Map3H4NCBI
cM Map382.52NCBI
Rpe65
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82251,425,228 - 251,457,209 (+)NCBIGRCr8
mRatBN7.22248,766,497 - 248,798,403 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2248,766,612 - 248,798,403 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2256,482,408 - 256,514,178 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02254,375,936 - 254,407,703 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02249,342,889 - 249,374,020 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02266,141,581 - 266,169,197 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2266,141,581 - 266,169,197 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02284,774,159 - 284,804,254 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.12257,860,998 - 257,893,921 (+)NCBI
Celera2240,512,281 - 240,537,640 (+)NCBICelera
Cytogenetic Map2q45NCBI
Rpe65
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542323,183,937 - 23,208,282 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495542323,184,326 - 23,208,206 (+)NCBIChiLan1.0ChiLan1.0
RPE65
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21158,421,347 - 158,442,454 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11157,581,121 - 157,602,228 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0167,666,784 - 67,687,891 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1169,623,775 - 69,644,894 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl169,623,775 - 69,644,904 (-)Ensemblpanpan1.1panPan2
RPE65
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1676,887,399 - 76,911,133 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl676,887,399 - 76,911,131 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha679,498,666 - 79,521,615 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0677,481,101 - 77,504,927 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl677,481,101 - 77,504,925 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1677,031,835 - 77,055,739 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0676,935,191 - 76,959,205 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0677,422,281 - 77,446,314 (+)NCBIUU_Cfam_GSD_1.0
Rpe65
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505881,055,133 - 81,142,276 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365913,347,272 - 3,368,015 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365913,347,346 - 3,368,062 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RPE65
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12064,662,777 - 64,684,178 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2064,664,358 - 64,683,211 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603352,929,980 - 52,950,761 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rpe65
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474227,302,453 - 27,319,203 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474227,302,222 - 27,319,549 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in RPE65
587 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system endocrine system nervous system
High
Medium 1 5
Low 5
Below cutoff 1 2 5

Sequence


RefSeq Acc Id: ENSSSCT00000004199   ⟹   ENSSSCP00000004105
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl6144,206,078 - 144,229,467 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000055971   ⟹   ENSSSCP00000048697
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl6144,206,077 - 144,293,709 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000056318   ⟹   ENSSSCP00000053794
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl6144,206,078 - 144,229,467 (+)Ensembl
RefSeq Acc Id: XM_003127931   ⟹   XP_003127979
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.16144,206,136 - 144,229,470 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013996289   ⟹   XP_013851743
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.16144,206,078 - 144,229,471 (+)NCBI
Sequence:
RefSeq Acc Id: XP_013851743   ⟸   XM_013996289
- Peptide Label: isoform X2
- UniProtKB: A0A287BB78 (UniProtKB/TrEMBL),   A0A4X1U9R3 (UniProtKB/TrEMBL),   A0A8D0UCN9 (UniProtKB/TrEMBL),   A0A8D1PBD6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_003127979   ⟸   XM_003127931
- Peptide Label: isoform X1
- UniProtKB: F1S830 (UniProtKB/TrEMBL),   A0A4X1U9R8 (UniProtKB/TrEMBL),   A0A8D0UCN9 (UniProtKB/TrEMBL),   A0A8D0JIU6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000048697   ⟸   ENSSSCT00000055971
RefSeq Acc Id: ENSSSCP00000053794   ⟸   ENSSSCT00000056318
RefSeq Acc Id: ENSSSCP00000004105   ⟸   ENSSSCT00000004199


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000003794 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00005025842 UniProtKB/TrEMBL
  ENSSSCG00015075775 UniProtKB/TrEMBL
  ENSSSCG00025028087 UniProtKB/TrEMBL
  ENSSSCG00030000688 UniProtKB/TrEMBL
  ENSSSCG00035039510 UniProtKB/TrEMBL
  ENSSSCG00040067198 UniProtKB/TrEMBL
  ENSSSCG00045000352 UniProtKB/TrEMBL
  ENSSSCG00050053252 UniProtKB/TrEMBL
  ENSSSCG00055000773 UniProtKB/TrEMBL
  ENSSSCG00060027868 UniProtKB/TrEMBL
  ENSSSCG00065030448 UniProtKB/TrEMBL
  ENSSSCG00070015021 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000004199 ENTREZGENE
  ENSSSCT00000004199.5 UniProtKB/TrEMBL
  ENSSSCT00000056318 ENTREZGENE
  ENSSSCT00000056318.2 UniProtKB/TrEMBL
  ENSSSCT00005040972.1 UniProtKB/TrEMBL
  ENSSSCT00005041049.1 UniProtKB/TrEMBL
  ENSSSCT00005041096.1 UniProtKB/TrEMBL
  ENSSSCT00015102098.1 UniProtKB/TrEMBL
  ENSSSCT00015102233.1 UniProtKB/TrEMBL
  ENSSSCT00015102315.1 UniProtKB/TrEMBL
  ENSSSCT00025038290.1 UniProtKB/TrEMBL
  ENSSSCT00025038422.1 UniProtKB/TrEMBL
  ENSSSCT00030000930.1 UniProtKB/TrEMBL
  ENSSSCT00030000941.1 UniProtKB/TrEMBL
  ENSSSCT00035052485.1 UniProtKB/TrEMBL
  ENSSSCT00035052488.1 UniProtKB/TrEMBL
  ENSSSCT00040091962.1 UniProtKB/TrEMBL
  ENSSSCT00040092143.1 UniProtKB/TrEMBL
  ENSSSCT00045000484.1 UniProtKB/TrEMBL
  ENSSSCT00045000517.1 UniProtKB/TrEMBL
  ENSSSCT00050072512.1 UniProtKB/TrEMBL
  ENSSSCT00050072518.1 UniProtKB/TrEMBL
  ENSSSCT00050072536.1 UniProtKB/TrEMBL
  ENSSSCT00055001360.1 UniProtKB/TrEMBL
  ENSSSCT00055001380.1 UniProtKB/TrEMBL
  ENSSSCT00060037719.1 UniProtKB/TrEMBL
  ENSSSCT00060037726.1 UniProtKB/TrEMBL
  ENSSSCT00065041137.1 UniProtKB/TrEMBL
  ENSSSCT00065041143.1 UniProtKB/TrEMBL
  ENSSSCT00070029538.1 UniProtKB/TrEMBL
  ENSSSCT00070029543.1 UniProtKB/TrEMBL
  ENSSSCT00070029549.1 UniProtKB/TrEMBL
InterPro Carotenoid_Oase UniProtKB/TrEMBL
KEGG Report ssc:100516743 UniProtKB/TrEMBL
NCBI Gene RPE65 ENTREZGENE
PANTHER PTHR10543 UniProtKB/TrEMBL
  RETINOID ISOMEROHYDROLASE UniProtKB/TrEMBL
Pfam RPE65 UniProtKB/TrEMBL
UniProt A0A287BB78 ENTREZGENE
  A0A4X1U9Q8_PIG UniProtKB/TrEMBL
  A0A4X1U9R3 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1U9R8 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0JHF6_PIG UniProtKB/TrEMBL
  A0A8D0JIU6 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0UCN9 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1PBD6 ENTREZGENE, UniProtKB/TrEMBL
  F1S830 ENTREZGENE
  Q15B90_PIG UniProtKB/TrEMBL
UniProt Secondary A0A287BB78 UniProtKB/TrEMBL
  F1S830 UniProtKB/TrEMBL
VGNC ID VGNC:92420 ENTREZGENE