DEK (DEK proto-oncogene) - Rat Genome Database
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: DEK (DEK proto-oncogene) Sus scrofa
Analyze
Symbol: DEK
Name: DEK proto-oncogene
RGD ID: 13983970
Description: ENCODES a protein that exhibits DNA binding (inferred); INVOLVED IN regulation of double-strand break repair via nonhomologous end joining (ortholog); ASSOCIATED WITH Animal Disease Models (ortholog); Breast Neoplasms (ortholog); Neoplasm Invasiveness (ortholog); FOUND IN nucleoplasm (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: DEK oncogene; protein DEK
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl713,872,775 - 13,935,173 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1713,901,562 - 13,935,477 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2714,643,279 - 14,676,979 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
contractile fiber  (IEA)
nucleoplasm  (ISO)
nucleus  (IBA,IEA)

Molecular Function

References
Additional References at PubMed
PMID:14681463   PMID:15679890  


Genomics

Comparative Map Data
DEK
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl713,872,775 - 13,935,173 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1713,901,562 - 13,935,477 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2714,643,279 - 14,676,979 (-)NCBISscrofa10.2Sscrofa10.2susScr3
DEK
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl618,223,860 - 18,264,548 (-)EnsemblGRCh38hg38GRCh38
GRCh38618,223,860 - 18,264,541 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh37618,224,091 - 18,264,761 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36618,332,379 - 18,372,778 (-)NCBINCBI36hg18NCBI36
Build 34618,332,391 - 18,372,750NCBI
Celera619,462,368 - 19,502,747 (-)NCBI
Cytogenetic Map6p22.3NCBI
HuRef618,168,737 - 18,209,264 (-)NCBIHuRef
CHM1_1618,226,996 - 18,267,392 (-)NCBICHM1_1
Dek
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391347,238,243 - 47,261,134 (-)NCBIGRCm39mm39
GRCm39 Ensembl1347,238,251 - 47,259,677 (-)Ensembl
GRCm381347,084,767 - 47,107,530 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1347,084,775 - 47,106,201 (-)EnsemblGRCm38mm10GRCm38
MGSCv371347,180,136 - 47,201,589 (-)NCBIGRCm37mm9NCBIm37
MGSCv361347,095,757 - 47,117,082 (-)NCBImm8
Celera1348,169,343 - 48,190,333 (-)NCBICelera
Cytogenetic Map13A5NCBI
cM Map1324.5NCBI
Dek
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21717,580,804 - 17,602,825 (+)NCBI
Rnor_6.0 Ensembl1717,965,881 - 17,987,834 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.01717,965,872 - 17,987,836 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01719,948,512 - 19,970,498 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41723,633,551 - 23,655,507 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11723,633,599 - 23,655,553 (+)NCBI
Celera1717,292,456 - 17,314,107 (+)NCBICelera
Cytogenetic Map17p14NCBI
Dek
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495540828,470,207 - 28,472,083 (-)NCBIChiLan1.0ChiLan1.0
DEK
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1618,425,882 - 18,465,828 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl618,427,844 - 18,465,606 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0618,071,928 - 18,112,245 (-)NCBIMhudiblu_PPA_v0panPan3
DEK
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13517,014,802 - 17,045,308 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3517,016,231 - 17,044,749 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3516,964,433 - 16,994,862 (-)NCBI
ROS_Cfam_1.03517,121,494 - 17,151,609 (-)NCBI
UMICH_Zoey_3.13516,934,342 - 16,964,440 (-)NCBI
UNSW_CanFamBas_1.03516,991,575 - 17,021,999 (-)NCBI
UU_Cfam_GSD_1.03518,323,091 - 18,353,543 (-)NCBI
Dek
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_ltri_2NW_0244049467,737,766 - 7,766,430 (+)NCBI
SpeTri2.0NW_0049365523,964,515 - 3,997,318 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
DEK
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11753,879,902 - 53,919,533 (+)NCBI
Dek
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247568,421,492 - 8,447,452 (+)NCBI


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 10 4 3 5 2 23 2 3 3
Low
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSSSCT00000001170   ⟹   ENSSSCP00000001145
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl713,872,775 - 13,935,173 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000072363   ⟹   ENSSSCP00000061829
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl713,901,566 - 13,934,907 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000078393   ⟹   ENSSSCP00000068992
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl713,901,573 - 13,934,660 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000084221   ⟹   ENSSSCP00000063009
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl713,872,775 - 13,935,173 (-)Ensembl
RefSeq Acc Id: XM_001927909   ⟹   XP_001927944
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1713,901,562 - 13,935,477 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005665607   ⟹   XP_005665664
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1713,901,562 - 13,934,918 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021100232   ⟹   XP_020955891
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1713,901,562 - 13,934,891 (-)NCBI
Sequence:
RefSeq Acc Id: XR_002346333
RefSeq Status:
Type: NON-CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1713,901,562 - 13,935,246 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_001927944 (Get FASTA)   NCBI Sequence Viewer  
  XP_005665664 (Get FASTA)   NCBI Sequence Viewer  
  XP_020955891 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein JAG69594 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_001927944   ⟸   XM_001927909
- UniProtKB: F1RUH5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005665664   ⟸   XM_005665607
- UniProtKB: F1RUH5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020955891   ⟸   XM_021100232
- Sequence:
RefSeq Acc Id: ENSSSCP00000068992   ⟸   ENSSSCT00000078393
RefSeq Acc Id: ENSSSCP00000001145   ⟸   ENSSSCT00000001170
RefSeq Acc Id: ENSSSCP00000063009   ⟸   ENSSSCT00000084221
RefSeq Acc Id: ENSSSCP00000061829   ⟸   ENSSSCT00000072363
Protein Domains
DEK_C   SAP


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000001075 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00070025492 UniProtKB/TrEMBL
Ensembl Protein ENSSSCP00000001145 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCP00000061829 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCP00000063009 UniProtKB/TrEMBL
  ENSSSCP00000068992 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCP00070043073 UniProtKB/TrEMBL
  ENSSSCP00070043076 UniProtKB/TrEMBL
  ENSSSCP00070043079 UniProtKB/TrEMBL
  ENSSSCP00070043081 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000001170 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCT00000072363 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCT00000078393 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCT00000084221 UniProtKB/TrEMBL
  ENSSSCT00070050950 UniProtKB/TrEMBL
  ENSSSCT00070050953 UniProtKB/TrEMBL
  ENSSSCT00070050956 UniProtKB/TrEMBL
  ENSSSCT00070050958 UniProtKB/TrEMBL
InterPro DEK_C UniProtKB/TrEMBL
  SAP_dom UniProtKB/TrEMBL
KEGG Report ssc:100156871 UniProtKB/TrEMBL
NCBI Gene DEK ENTREZGENE
Pfam DEK_C UniProtKB/TrEMBL
SMART SAP UniProtKB/TrEMBL
UniProt A0A4X1VI26_PIG UniProtKB/TrEMBL
  A0A4X1VM28_PIG UniProtKB/TrEMBL
  A0A4X1VMM1_PIG UniProtKB/TrEMBL
  A0A4X1VNK7_PIG UniProtKB/TrEMBL
  A0A5G2QEC3_PIG UniProtKB/TrEMBL
  A0A5G2QII0_PIG UniProtKB/TrEMBL
  A0A5G2QXX4_PIG UniProtKB/TrEMBL
  F1RUH5 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:103934 ENTREZGENE