SELENON (selenoprotein N) - Rat Genome Database
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Gene: SELENON (selenoprotein N) Sus scrofa
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Symbol: SELENON
Name: selenoprotein N
RGD ID: 13983883
Description: ENCODES a protein that exhibits calcium ion binding (inferred); INVOLVED IN cellular response to caffeine (ortholog); cellular response to oxidative stress (ortholog); lung alveolus development (ortholog); ASSOCIATED WITH congenital fiber-type disproportion (ortholog); congenital structural myopathy (ortholog); Joint Instability (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: selenoprotein N, 1; SEPN1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1683,246,934 - 83,262,748 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2676,814,410 - 76,821,459 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:14681463   PMID:17145712  


Genomics

Comparative Map Data
SELENON
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1683,246,934 - 83,262,748 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2676,814,410 - 76,821,459 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SELENON
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl125,800,176 - 25,818,221 (+)EnsemblGRCh38hg38GRCh38
GRCh38125,800,193 - 25,818,221 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh37126,126,684 - 26,144,712 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36125,999,254 - 26,017,300 (+)NCBINCBI36hg18NCBI36
Celera124,522,754 - 24,540,804 (+)NCBI
Cytogenetic Map1p36.11NCBI
HuRef124,383,830 - 24,400,647 (+)NCBIHuRef
CHM1_1126,240,110 - 26,257,988 (+)NCBICHM1_1
Selenon
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394134,265,203 - 134,279,477 (-)NCBIGRCm39mm39
GRCm39 Ensembl4134,265,203 - 134,279,477 (-)Ensembl
GRCm384134,537,892 - 134,552,166 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4134,537,892 - 134,552,166 (-)EnsemblGRCm38mm10GRCm38
MGSCv374134,093,807 - 134,108,081 (-)NCBIGRCm37mm9NCBIm37
MGSCv364133,809,971 - 133,814,432 (-)NCBImm8
Celera4132,720,626 - 132,734,950 (-)NCBICelera
Cytogenetic Map4D3NCBI
Selenon
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.25146,748,638 - 146,764,656 (-)NCBI
Rnor_6.0 Ensembl5152,750,284 - 152,762,165 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.05152,748,497 - 152,765,489 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.05156,534,095 - 156,553,701 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45153,295,598 - 153,308,305 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.15153,305,727 - 153,317,685 (-)NCBI
Celera5145,163,547 - 145,177,184 (-)NCBICelera
Cytogenetic Map5q36NCBI
Selenon
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554525,295,716 - 5,311,113 (+)NCBIChiLan1.0ChiLan1.0
SELENON
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1126,126,602 - 26,144,249 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl126,127,125 - 26,141,745 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0125,058,907 - 25,076,817 (+)NCBIMhudiblu_PPA_v0panPan3
SELENON
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1274,134,448 - 74,149,585 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Selenon
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_00493647410,381,646 - 10,396,638 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SELENON
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.120106,953,286 - 106,971,249 (-)NCBI
Selenon
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247649,892,161 - 9,905,984 (+)NCBI


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 1 2
Low 10 4 3 4 2 21 2 3 3
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: XM_021095600   ⟹   XP_020951259
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1683,246,934 - 83,262,748 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_020951259 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein ABL61083 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_020951259   ⟸   XM_021095600
- Sequence:
Protein Domains
EF-hand


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000003554 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSSSCP00000003857 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCP00000073558 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000003948 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCT00000077172 UniProtKB/TrEMBL
InterPro EF_hand_dom UniProtKB/TrEMBL
NCBI Gene SELENON ENTREZGENE
PROSITE EF_HAND_2 UniProtKB/TrEMBL
UniProt A0A5G2R8G2_PIG UniProtKB/TrEMBL
  F1STT5_PIG UniProtKB/TrEMBL
VGNC ID VGNC:98611 ENTREZGENE