PXMP2 (peroxisomal membrane protein 2) - Rat Genome Database

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Gene: PXMP2 (peroxisomal membrane protein 2) Sus scrofa
Analyze
Symbol: PXMP2
Name: peroxisomal membrane protein 2
RGD ID: 13983528
Description: ENCODES a protein that exhibits protein serine/threonine phosphatase activity (inferred); INVOLVED IN positive regulation of mitochondrial fission (inferred); programmed cell death (inferred); ASSOCIATED WITH colorectal cancer (ortholog); genetic disease (ortholog); FOUND IN peroxisomal membrane (ortholog); peroxisome (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1422,780,161 - 22,797,962 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11422,784,212 - 22,798,019 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
PXMP2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1422,780,161 - 22,797,962 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11422,784,212 - 22,798,019 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
PXMP2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3812132,687,587 - 132,704,985 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl12132,687,587 - 132,704,985 (+)EnsemblGRCh38hg38GRCh38
GRCh3712133,264,173 - 133,281,571 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3612131,774,265 - 131,791,650 (+)NCBINCBI36Build 36hg18NCBI36
Build 3412131,874,541 - 131,891,926NCBI
Celera12132,966,844 - 132,981,555 (+)NCBICelera
Cytogenetic Map12q24.33NCBI
HuRef12130,043,189 - 130,060,720 (+)NCBIHuRef
CHM1_112133,084,186 - 133,101,567 (+)NCBICHM1_1
T2T-CHM13v2.012132,737,814 - 132,753,863 (+)NCBIT2T-CHM13v2.0
Pxmp2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395110,422,152 - 110,434,036 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5110,422,148 - 110,434,052 (-)EnsemblGRCm39 Ensembl
GRCm385110,274,286 - 110,286,222 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5110,274,282 - 110,286,186 (-)EnsemblGRCm38mm10GRCm38
MGSCv375110,703,305 - 110,715,187 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv365110,514,862 - 110,526,307 (-)NCBIMGSCv36mm8
Celera5107,398,021 - 107,409,799 (-)NCBICelera
Cytogenetic Map5FNCBI
cM Map553.44NCBI
Pxmp2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81252,053,951 - 52,064,283 (+)NCBIGRCr8
mRatBN7.21246,394,051 - 46,404,561 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1246,394,193 - 46,404,557 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1247,569,991 - 47,580,278 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01248,175,416 - 48,185,705 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01247,235,941 - 47,246,231 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01252,452,354 - 52,462,655 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1252,452,273 - 52,462,659 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01254,187,729 - 54,198,030 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41246,540,320 - 46,550,621 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11246,407,254 - 46,417,553 (+)NCBI
Celera1247,950,611 - 47,960,912 (+)NCBICelera
Cytogenetic Map12q16NCBI
Pxmp2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955482366,874 - 373,125 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955482366,613 - 373,339 (-)NCBIChiLan1.0ChiLan1.0
PXMP2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v210140,796,709 - 140,811,702 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan112140,793,264 - 140,808,219 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v012130,038,499 - 130,054,415 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.112134,758,728 - 134,782,122 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl12134,758,728 - 134,782,122 (+)Ensemblpanpan1.1panPan2
PXMP2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.126417,779 - 427,724 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl26418,056 - 427,823 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha26459,714 - 469,802 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.026475,398 - 485,488 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl26464,505 - 485,472 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.126416,730 - 426,871 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.026503,795 - 513,875 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.026435,012 - 445,089 (-)NCBIUU_Cfam_GSD_1.0
Pxmp2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118122,076,677 - 122,098,041 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366602,622,992 - 2,632,586 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366602,623,027 - 2,643,976 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PXMP2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.111128,030,507 - 128,044,231 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl11128,030,525 - 128,045,503 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666037116,821,916 - 116,836,251 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Pxmp2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462474728,068,343 - 28,076,183 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in PXMP2
262 total Variants

Expression


Sequence


RefSeq Acc Id: ENSSSCT00000039545   ⟹   ENSSSCP00000047710
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1422,784,214 - 22,797,904 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000063852   ⟹   ENSSSCP00000032691
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1422,780,161 - 22,797,962 (-)Ensembl
RefSeq Acc Id: XM_021073942   ⟹   XP_020929601
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11422,784,212 - 22,798,019 (-)NCBI
Sequence:
RefSeq Acc Id: XP_020929601   ⟸   XM_021073942
- UniProtKB: A0A4X1URR3 (UniProtKB/TrEMBL),   A0A287AV17 (UniProtKB/TrEMBL),   A0A4X1UUW2 (UniProtKB/TrEMBL),   A0A8D1MNG7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000047710   ⟸   ENSSSCT00000039545
RefSeq Acc Id: ENSSSCP00000032691   ⟸   ENSSSCT00000063852


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000045726 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00015047237 UniProtKB/TrEMBL
  ENSSSCG00025027235 UniProtKB/TrEMBL
  ENSSSCG00030035918 UniProtKB/TrEMBL
  ENSSSCG00035015669 UniProtKB/TrEMBL
  ENSSSCG00040058290 UniProtKB/TrEMBL
  ENSSSCG00045008611 UniProtKB/TrEMBL
  ENSSSCG00050044879 UniProtKB/TrEMBL
  ENSSSCG00055027116 UniProtKB/TrEMBL
  ENSSSCG00060056769 UniProtKB/TrEMBL
  ENSSSCG00065010699 UniProtKB/TrEMBL
  ENSSSCG00070019385 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000039545 ENTREZGENE
  ENSSSCT00000039545.2 UniProtKB/TrEMBL
  ENSSSCT00000063852.3 UniProtKB/TrEMBL
  ENSSSCT00015063128.1 UniProtKB/TrEMBL
  ENSSSCT00015063234.1 UniProtKB/TrEMBL
  ENSSSCT00015063322.1 UniProtKB/TrEMBL
  ENSSSCT00025036882.1 UniProtKB/TrEMBL
  ENSSSCT00025036975.1 UniProtKB/TrEMBL
  ENSSSCT00025037053.1 UniProtKB/TrEMBL
  ENSSSCT00025037126.1 UniProtKB/TrEMBL
  ENSSSCT00030049852.1 UniProtKB/TrEMBL
  ENSSSCT00030049893.1 UniProtKB/TrEMBL
  ENSSSCT00030049911.1 UniProtKB/TrEMBL
  ENSSSCT00030049924.1 UniProtKB/TrEMBL
  ENSSSCT00035019977.1 UniProtKB/TrEMBL
  ENSSSCT00035019982.1 UniProtKB/TrEMBL
  ENSSSCT00035019987.1 UniProtKB/TrEMBL
  ENSSSCT00040079093.1 UniProtKB/TrEMBL
  ENSSSCT00040079142.1 UniProtKB/TrEMBL
  ENSSSCT00040079162.1 UniProtKB/TrEMBL
  ENSSSCT00040079197.1 UniProtKB/TrEMBL
  ENSSSCT00045014545.1 UniProtKB/TrEMBL
  ENSSSCT00045014605.1 UniProtKB/TrEMBL
  ENSSSCT00045014659.1 UniProtKB/TrEMBL
  ENSSSCT00050061070.1 UniProtKB/TrEMBL
  ENSSSCT00050061074.1 UniProtKB/TrEMBL
  ENSSSCT00050061079.1 UniProtKB/TrEMBL
  ENSSSCT00050061086.1 UniProtKB/TrEMBL
  ENSSSCT00055053599.1 UniProtKB/TrEMBL
  ENSSSCT00055053663.1 UniProtKB/TrEMBL
  ENSSSCT00055053706.1 UniProtKB/TrEMBL
  ENSSSCT00060077317.1 UniProtKB/TrEMBL
  ENSSSCT00060077320.1 UniProtKB/TrEMBL
  ENSSSCT00060077323.1 UniProtKB/TrEMBL
  ENSSSCT00060077328.1 UniProtKB/TrEMBL
  ENSSSCT00065014204.1 UniProtKB/TrEMBL
  ENSSSCT00065014218.1 UniProtKB/TrEMBL
  ENSSSCT00065014231.1 UniProtKB/TrEMBL
  ENSSSCT00070038350.1 UniProtKB/TrEMBL
  ENSSSCT00070038360.1 UniProtKB/TrEMBL
  ENSSSCT00070038369.1 UniProtKB/TrEMBL
  ENSSSCT00070038380.1 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.1240 UniProtKB/TrEMBL
InterPro His_Pase_superF_clade-1 UniProtKB/TrEMBL
  His_PPase_superfam UniProtKB/TrEMBL
  Mpv17_PMP22 UniProtKB/TrEMBL
NCBI Gene PXMP2 ENTREZGENE
PANTHER PEROXISOMAL MEMBRANE PROTEIN 2 UniProtKB/TrEMBL
  PHOSPHOGLYCERATE MUTASE-RELATED UniProtKB/TrEMBL
  PTHR11266 UniProtKB/TrEMBL
  SERINE/THREONINE-PROTEIN PHOSPHATASE PGAM5, MITOCHONDRIAL UniProtKB/TrEMBL
Pfam His_Phos_1 UniProtKB/TrEMBL
  Mpv17_PMP22 UniProtKB/TrEMBL
Superfamily-SCOP SSF53254 UniProtKB/TrEMBL
UniProt A0A286ZM41_PIG UniProtKB/TrEMBL
  A0A287AV17 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1URR3 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1UTU8_PIG UniProtKB/TrEMBL
  A0A4X1UUW2 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0K3N2_PIG UniProtKB/TrEMBL
  A0A8D1MNG7 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:111133 ENTREZGENE