NAXE (NAD(P)HX epimerase) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: NAXE (NAD(P)HX epimerase) Sus scrofa
Analyze
Symbol: NAXE
Name: NAD(P)HX epimerase
RGD ID: 13981789
Description: ENCODES a protein that exhibits identical protein binding (inferred); isomerase activity (inferred); metal ion binding (inferred); INVOLVED IN membrane raft distribution (ortholog); negative regulation of angiogenesis (ortholog); nicotinamide nucleotide metabolic process (ortholog); ASSOCIATED WITH brain disease (ortholog); Charcot-Marie-Tooth disease type 2 (ortholog); Early-Onset Progressive Encephalopathy with Brain Edema and/or Leukoencephalopathy (ortholog); FOUND IN cell body (inferred); cilium (inferred); extracellular region (inferred)
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: AI-BP; APOA1BP; apolipoprotein A-I-binding protein; apoliprotein A-I binding protein; NAD(P)H-hydrate epimerase
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl493,490,537 - 93,496,396 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1493,493,234 - 93,495,912 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.24102,289,153 - 102,291,831 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:14681463   PMID:22261194   PMID:30032202  


Genomics

Comparative Map Data
NAXE
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl493,490,537 - 93,496,396 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1493,493,234 - 93,495,912 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.24102,289,153 - 102,291,831 (+)NCBISscrofa10.2Sscrofa10.2susScr3
NAXE
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381156,591,776 - 156,594,299 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1156,591,756 - 156,609,507 (+)EnsemblGRCh38hg38GRCh38
GRCh371156,561,568 - 156,564,091 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361154,828,182 - 154,830,715 (+)NCBINCBI36Build 36hg18NCBI36
Build 341153,374,642 - 153,377,162NCBI
Celera1129,632,348 - 129,634,881 (+)NCBICelera
Cytogenetic Map1q22NCBI
HuRef1127,919,237 - 127,921,770 (+)NCBIHuRef
CHM1_11157,957,748 - 157,960,281 (+)NCBICHM1_1
T2T-CHM13v2.01155,728,152 - 155,730,675 (+)NCBIT2T-CHM13v2.0
Naxe
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39387,963,827 - 87,965,851 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl387,963,827 - 87,965,802 (-)EnsemblGRCm39 Ensembl
GRCm38388,056,520 - 88,058,542 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl388,056,520 - 88,058,495 (-)EnsemblGRCm38mm10GRCm38
MGSCv37387,860,445 - 87,862,417 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36388,142,450 - 88,144,422 (-)NCBIMGSCv36mm8
Celera388,096,041 - 88,098,013 (-)NCBICelera
Cytogenetic Map3F1NCBI
cM Map338.78NCBI
Naxe
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82175,816,824 - 175,818,903 (-)NCBIGRCr8
mRatBN7.22173,518,971 - 173,521,036 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2173,518,971 - 173,521,040 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2180,663,782 - 180,665,845 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02178,686,143 - 178,688,206 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02173,286,339 - 173,288,404 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02187,424,319 - 187,426,410 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2187,424,327 - 187,426,375 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02206,827,336 - 206,829,422 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42180,132,497 - 180,134,558 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12180,082,661 - 180,094,499 (-)NCBI
Celera2167,466,212 - 167,468,273 (-)NCBICelera
Cytogenetic Map2q34NCBI
Naxe
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555452,682,385 - 2,684,518 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555452,682,384 - 2,687,348 (+)NCBIChiLan1.0ChiLan1.0
NAXE
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2193,237,467 - 93,252,885 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1192,971,984 - 92,987,394 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01131,935,295 - 131,937,843 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11135,758,868 - 135,761,416 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1135,758,868 - 135,761,416 (+)Ensemblpanpan1.1panPan2
NAXE
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1741,367,248 - 41,369,733 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl741,367,275 - 41,369,862 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha740,854,553 - 40,857,041 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0741,230,402 - 41,232,892 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl741,230,429 - 41,232,898 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1741,012,056 - 41,014,536 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0741,065,296 - 41,067,780 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0741,348,969 - 41,351,458 (-)NCBIUU_Cfam_GSD_1.0
Naxe
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505826,739,217 - 26,742,251 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365805,769,633 - 5,772,582 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365805,769,583 - 5,772,633 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NAXE
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1207,267,885 - 7,270,440 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl207,268,100 - 7,270,442 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660386,564,280 - 6,567,063 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Naxe
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248851,780,882 - 1,783,242 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248851,780,894 - 1,783,288 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in NAXE
97 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium
Low 1 4
Below cutoff 9 3 3 4 1 17 1 2 1

Sequence


RefSeq Acc Id: ENSSSCT00000007098   ⟹   ENSSSCP00000006906
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl493,490,537 - 93,495,940 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000073058   ⟹   ENSSSCP00000066733
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl493,490,537 - 93,496,396 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000095977   ⟹   ENSSSCP00000078609
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl493,490,660 - 93,495,973 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000106879   ⟹   ENSSSCP00000076159
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl493,490,660 - 93,495,973 (-)Ensembl
RefSeq Acc Id: NM_001078664   ⟹   NP_001072132
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1493,493,234 - 93,495,912 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001072132 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein ABH01264 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSSCP00000006906
  ENSSSCP00000006906.3
  ENSSSCP00000066733.1
  ENSSSCP00000076159.1
  ENSSSCP00000078609.1
  ENSSSCP00040006011.1
GenBank Protein Q0PIT9 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_001072132   ⟸   NM_001078664
- Peptide Label: precursor
- UniProtKB: Q0PIT9 (UniProtKB/Swiss-Prot),   A0A8D1DFA3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000006906   ⟸   ENSSSCT00000007098
RefSeq Acc Id: ENSSSCP00000066733   ⟸   ENSSSCT00000073058
RefSeq Acc Id: ENSSSCP00000076159   ⟸   ENSSSCT00000106879
RefSeq Acc Id: ENSSSCP00000078609   ⟸   ENSSSCT00000095977
Protein Domains
YjeF N-terminal


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000006480 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00040011677 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000007098 ENTREZGENE
  ENSSSCT00000007098.4 UniProtKB/TrEMBL
  ENSSSCT00000073058.2 UniProtKB/TrEMBL
  ENSSSCT00000095977.1 UniProtKB/TrEMBL
  ENSSSCT00000106879.1 UniProtKB/TrEMBL
  ENSSSCT00040015319.1 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.10260 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro YjeF_N_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  YjeF_N_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  YJEFN_prot_eukaryotes UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report ssc:780405 UniProtKB/Swiss-Prot
NCBI Gene NAXE ENTREZGENE
PANTHER NAD(P)H-HYDRATE EPIMERASE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR13232 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam YjeF_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE YJEF_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF64153 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A5G2QPA8_PIG UniProtKB/TrEMBL
  A0A8D1DFA3 ENTREZGENE, UniProtKB/TrEMBL
  A0A8W4FCX4_PIG UniProtKB/TrEMBL
  A0A8W4FH10_PIG UniProtKB/TrEMBL
  F1RP34_PIG UniProtKB/TrEMBL
  NNRE_PIG UniProtKB/Swiss-Prot, ENTREZGENE
VGNC ID VGNC:98824 ENTREZGENE