NAXE (Sus scrofa - pig) |
Pig Assembly | Chr | Position (strand) | Source | Genome Browsers |
---|
JBrowse | NCBI | UCSC | Ensembl |
---|
Sscrofa11.1 Ensembl | 4 | 93,490,537 - 93,496,396 (-) | Ensembl | Sscrofa11.1 | | susScr11 | Sscrofa11.1 | Sscrofa11.1 | 4 | 93,493,234 - 93,495,912 (-) | NCBI | Sscrofa11.1 | Sscrofa11.1 | susScr11 | Sscrofa11.1 | Sscrofa10.2 | 4 | 102,289,153 - 102,291,831 (+) | NCBI | Sscrofa10.2 | Sscrofa10.2 | susScr3 | |
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NAXE (Homo sapiens - human) |
Human Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
---|
GRCh38 | 1 | 156,591,776 - 156,594,299 (+) | NCBI | GRCh38 | GRCh38 | hg38 | GRCh38 | GRCh38.p14 Ensembl | 1 | 156,591,756 - 156,609,507 (+) | Ensembl | GRCh38 | | hg38 | GRCh38 | GRCh37 | 1 | 156,561,568 - 156,564,091 (+) | NCBI | GRCh37 | GRCh37 | hg19 | GRCh37 | Build 36 | 1 | 154,828,182 - 154,830,715 (+) | NCBI | NCBI36 | Build 36 | hg18 | NCBI36 | Build 34 | 1 | 153,374,642 - 153,377,162 | NCBI | | | | | Celera | 1 | 129,632,348 - 129,634,881 (+) | NCBI | | Celera | | | Cytogenetic Map | 1 | q22 | NCBI | | | | | HuRef | 1 | 127,919,237 - 127,921,770 (+) | NCBI | | HuRef | | | CHM1_1 | 1 | 157,957,748 - 157,960,281 (+) | NCBI | | CHM1_1 | | | T2T-CHM13v2.0 | 1 | 155,728,152 - 155,730,675 (+) | NCBI | | T2T-CHM13v2.0 | | |
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Naxe (Mus musculus - house mouse) |
Mouse Assembly | Chr | Position (strand) | Source | Genome Browsers |
---|
JBrowse | NCBI | UCSC | Ensembl |
---|
GRCm39 | 3 | 87,963,827 - 87,965,851 (-) | NCBI | GRCm39 | GRCm39 | mm39 | | GRCm39 Ensembl | 3 | 87,963,827 - 87,965,802 (-) | Ensembl | | GRCm39 Ensembl | | | GRCm38 | 3 | 88,056,520 - 88,058,542 (-) | NCBI | GRCm38 | GRCm38 | mm10 | GRCm38 | GRCm38.p6 Ensembl | 3 | 88,056,520 - 88,058,495 (-) | Ensembl | GRCm38 | | mm10 | GRCm38 | MGSCv37 | 3 | 87,860,445 - 87,862,417 (-) | NCBI | GRCm37 | MGSCv37 | mm9 | NCBIm37 | MGSCv36 | 3 | 88,142,450 - 88,144,422 (-) | NCBI | | MGSCv36 | mm8 | | Celera | 3 | 88,096,041 - 88,098,013 (-) | NCBI | | Celera | | | Cytogenetic Map | 3 | F1 | NCBI | | | | | cM Map | 3 | 38.78 | NCBI | | | | |
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Naxe (Rattus norvegicus - Norway rat) |
Rat Assembly | Chr | Position (strand) | Source | Genome Browsers |
---|
JBrowse | NCBI | UCSC | Ensembl |
---|
GRCr8 | 2 | 175,816,824 - 175,818,903 (-) | NCBI | | GRCr8 | | | mRatBN7.2 | 2 | 173,518,971 - 173,521,036 (-) | NCBI | mRatBN7.2 | mRatBN7.2 | | | mRatBN7.2 Ensembl | 2 | 173,518,971 - 173,521,040 (-) | Ensembl | | mRatBN7.2 Ensembl | | | UTH_Rnor_SHR_Utx | 2 | 180,663,782 - 180,665,845 (-) | NCBI | Rnor_SHR | UTH_Rnor_SHR_Utx | | | UTH_Rnor_SHRSP_BbbUtx_1.0 | 2 | 178,686,143 - 178,688,206 (-) | NCBI | Rnor_SHRSP | UTH_Rnor_SHRSP_BbbUtx_1.0 | | | UTH_Rnor_WKY_Bbb_1.0 | 2 | 173,286,339 - 173,288,404 (-) | NCBI | Rnor_WKY | UTH_Rnor_WKY_Bbb_1.0 | | | Rnor_6.0 | 2 | 187,424,319 - 187,426,410 (-) | NCBI | Rnor6.0 | Rnor_6.0 | rn6 | Rnor6.0 | Rnor_6.0 Ensembl | 2 | 187,424,327 - 187,426,375 (-) | Ensembl | Rnor6.0 | | rn6 | Rnor6.0 | Rnor_5.0 | 2 | 206,827,336 - 206,829,422 (-) | NCBI | Rnor5.0 | Rnor_5.0 | rn5 | Rnor5.0 | RGSC_v3.4 | 2 | 180,132,497 - 180,134,558 (-) | NCBI | RGSC3.4 | RGSC_v3.4 | rn4 | RGSC3.4 | RGSC_v3.1 | 2 | 180,082,661 - 180,094,499 (-) | NCBI | | | | | Celera | 2 | 167,466,212 - 167,468,273 (-) | NCBI | | Celera | | | Cytogenetic Map | 2 | q34 | NCBI | | | | |
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Naxe (Chinchilla lanigera - long-tailed chinchilla) |
Chinchilla Assembly | Chr | Position (strand) | Source | Genome Browsers |
---|
JBrowse | NCBI | UCSC | Ensembl |
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ChiLan1.0 Ensembl | NW_004955545 | 2,682,385 - 2,684,518 (+) | Ensembl | ChiLan1.0 | | | | ChiLan1.0 | NW_004955545 | 2,682,384 - 2,687,348 (+) | NCBI | ChiLan1.0 | ChiLan1.0 | | |
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NAXE (Pan paniscus - bonobo/pygmy chimpanzee) |
Bonobo Assembly | Chr | Position (strand) | Source | Genome Browsers |
---|
JBrowse | NCBI | UCSC | Ensembl |
---|
NHGRI_mPanPan1-v2 | 1 | 93,237,467 - 93,252,885 (-) | NCBI | | NHGRI_mPanPan1-v2 | | | NHGRI_mPanPan1 | 1 | 92,971,984 - 92,987,394 (-) | NCBI | | NHGRI_mPanPan1 | | | Mhudiblu_PPA_v0 | 1 | 131,935,295 - 131,937,843 (+) | NCBI | Mhudiblu_PPA_v0 | Mhudiblu_PPA_v0 | panPan3 | | PanPan1.1 | 1 | 135,758,868 - 135,761,416 (+) | NCBI | panpan1.1 | PanPan1.1 | panPan2 | | PanPan1.1 Ensembl | 1 | 135,758,868 - 135,761,416 (+) | Ensembl | panpan1.1 | | panPan2 | |
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NAXE (Canis lupus familiaris - dog) |
Dog Assembly | Chr | Position (strand) | Source | Genome Browsers |
---|
JBrowse | NCBI | UCSC | Ensembl |
---|
CanFam3.1 | 7 | 41,367,248 - 41,369,733 (-) | NCBI | CanFam3.1 | CanFam3.1 | canFam3 | CanFam3.1 | CanFam3.1 Ensembl | 7 | 41,367,275 - 41,369,862 (-) | Ensembl | CanFam3.1 | | canFam3 | CanFam3.1 | Dog10K_Boxer_Tasha | 7 | 40,854,553 - 40,857,041 (-) | NCBI | | Dog10K_Boxer_Tasha | | | ROS_Cfam_1.0 | 7 | 41,230,402 - 41,232,892 (-) | NCBI | | ROS_Cfam_1.0 | | | ROS_Cfam_1.0 Ensembl | 7 | 41,230,429 - 41,232,898 (-) | Ensembl | | ROS_Cfam_1.0 Ensembl | | | UMICH_Zoey_3.1 | 7 | 41,012,056 - 41,014,536 (-) | NCBI | | UMICH_Zoey_3.1 | | | UNSW_CanFamBas_1.0 | 7 | 41,065,296 - 41,067,780 (-) | NCBI | | UNSW_CanFamBas_1.0 | | | UU_Cfam_GSD_1.0 | 7 | 41,348,969 - 41,351,458 (-) | NCBI | | UU_Cfam_GSD_1.0 | | |
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Naxe (Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
Squirrel Assembly | Chr | Position (strand) | Source | Genome Browsers |
---|
JBrowse | NCBI | UCSC | Ensembl |
---|
HiC_Itri_2 | NW_024405058 | 26,739,217 - 26,742,251 (+) | NCBI | | HiC_Itri_2 | | | SpeTri2.0 Ensembl | NW_004936580 | 5,769,633 - 5,772,582 (+) | Ensembl | SpeTri2.0 | SpeTri2.0 Ensembl | | | SpeTri2.0 | NW_004936580 | 5,769,583 - 5,772,633 (+) | NCBI | SpeTri2.0 | SpeTri2.0 | | SpeTri2.0 |
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NAXE (Chlorocebus sabaeus - green monkey) |
Green Monkey Assembly | Chr | Position (strand) | Source | Genome Browsers |
---|
JBrowse | NCBI | UCSC | Ensembl |
---|
ChlSab1.1 | 20 | 7,267,885 - 7,270,440 (-) | NCBI | ChlSab1.1 | ChlSab1.1 | chlSab2 | | ChlSab1.1 Ensembl | 20 | 7,268,100 - 7,270,442 (-) | Ensembl | ChlSab1.1 | ChlSab1.1 Ensembl | chlSab2 | | Vero_WHO_p1.0 | NW_023666038 | 6,564,280 - 6,567,063 (-) | NCBI | Vero_WHO_p1.0 | Vero_WHO_p1.0 | | |
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Naxe (Heterocephalus glaber - naked mole-rat) |
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