MYOM2 (myomesin 2) - Rat Genome Database

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Gene: MYOM2 (myomesin 2) Sus scrofa
Analyze
Symbol: MYOM2
Name: myomesin 2
RGD ID: 13980907
Description: ENCODES a protein that exhibits kinase binding (ortholog); INVOLVED IN extraocular skeletal muscle development (ortholog); muscle contraction (ortholog); sarcomere organization (ortholog); ASSOCIATED WITH Contracture (ortholog); FOUND IN M band (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: LOW QUALITY PROTEIN: myomesin-2; myomesin (M-protein) 2, 165kDa
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.11533,529,559 - 33,606,928 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21538,071,182 - 38,120,980 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View
Contracture  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
M band  (IBA,ISO)

Molecular Function

References

Genomics

Comparative Map Data
MYOM2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.11533,529,559 - 33,606,928 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21538,071,182 - 38,120,980 (+)NCBISscrofa10.2Sscrofa10.2susScr3
MYOM2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl82,045,046 - 2,165,552 (+)EnsemblGRCh38hg38GRCh38
GRCh3882,045,046 - 2,145,456 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh3781,993,161 - 2,093,380 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3681,980,565 - 2,080,787 (+)NCBINCBI36hg18NCBI36
Build 3481,980,654 - 2,080,786NCBI
Celera81,935,877 - 2,035,353 (+)NCBI
Cytogenetic Map8p23.3NCBI
HuRef81,809,335 - 1,908,897 (+)NCBIHuRef
CHM1_181,992,917 - 2,093,330 (+)NCBICHM1_1
Myom2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39815,107,653 - 15,183,420 (+)NCBIGRCm39mm39
GRCm39 Ensembl815,107,653 - 15,183,541 (+)Ensembl
GRCm38815,057,653 - 15,133,420 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl815,057,653 - 15,133,541 (+)EnsemblGRCm38mm10GRCm38
MGSCv37815,057,653 - 15,133,419 (+)NCBIGRCm37mm9NCBIm37
MGSCv36815,057,630 - 15,133,518 (+)NCBImm8
Celera815,222,231 - 15,297,079 (+)NCBICelera
Cytogenetic Map8A1.1NCBI
Myom2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21674,520,148 - 74,592,658 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl1674,520,157 - 74,592,772 (-)Ensembl
Rnor_6.01679,587,136 - 79,672,871 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1679,587,640 - 79,671,719 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01679,164,821 - 79,248,508 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41679,330,395 - 79,402,689 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11679,357,340 - 79,361,498 (-)NCBI
Celera1672,338,236 - 72,408,234 (-)NCBICelera
Cytogenetic Map16q12.5NCBI
Myom2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540357,717,151 - 57,772,254 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540357,718,120 - 57,783,338 (-)NCBIChiLan1.0ChiLan1.0
MYOM2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.181,924,662 - 2,054,706 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl81,924,661 - 2,057,695 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v085,189,688 - 5,319,538 (-)NCBIMhudiblu_PPA_v0panPan3
MYOM2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11654,379,342 - 54,392,955 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1649,822,565 - 49,877,815 (+)NCBI
ROS_Cfam_1.01661,785,970 - 61,837,393 (-)NCBI
UMICH_Zoey_3.11654,462,472 - 54,517,516 (+)NCBI
UNSW_CanFamBas_1.01659,694,871 - 59,745,918 (-)NCBI
UU_Cfam_GSD_1.01660,079,361 - 60,129,897 (-)NCBI
Myom2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244049431,153,000 - 1,223,233 (+)NCBI
SpeTri2.0NW_0049366151,153,056 - 1,223,239 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MYOM2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.181,634,917 - 1,809,804 (+)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl81,705,074 - 1,809,874 (+)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366605443,567,081 - 43,701,777 (+)NCBIVero_WHO_p1.0
Myom2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248611,117,501 - 1,177,650 (+)NCBIHetGla_female_1.0hetGla2


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 2 2
Low 2 2 3 4 19 2 1 1
Below cutoff 7 1 4 2 1

Sequence


Reference Sequences
RefSeq Acc Id: XM_021075902   ⟹   XP_020931561
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11533,529,559 - 33,606,928 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_020931561 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_020931561   ⟸   XM_021075902
- Sequence:
Protein Domains
Fibronectin type-III   Ig-like


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000015747 UniProtKB/TrEMBL
Ensembl Protein ENSSSCP00000016687 UniProtKB/TrEMBL
  ENSSSCP00000031896 UniProtKB/TrEMBL
  ENSSSCP00000040201 UniProtKB/TrEMBL
  ENSSSCP00000059067 UniProtKB/TrEMBL
  ENSSSCP00000063655 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000017147 UniProtKB/TrEMBL
  ENSSSCT00000044724 UniProtKB/TrEMBL
  ENSSSCT00000055145 UniProtKB/TrEMBL
  ENSSSCT00000065179 UniProtKB/TrEMBL
  ENSSSCT00000079781 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.10 UniProtKB/TrEMBL
InterPro FN3_dom UniProtKB/TrEMBL
  FN3_sf UniProtKB/TrEMBL
  Ig-like_dom UniProtKB/TrEMBL
  Ig-like_dom_sf UniProtKB/TrEMBL
  Ig-like_fold UniProtKB/TrEMBL
  Ig_I-set UniProtKB/TrEMBL
  Ig_sub UniProtKB/TrEMBL
  Ig_sub2 UniProtKB/TrEMBL
NCBI Gene MYOM2 ENTREZGENE
Pfam fn3 UniProtKB/TrEMBL
  I-set UniProtKB/TrEMBL
PROSITE FN3 UniProtKB/TrEMBL
  IG_LIKE UniProtKB/TrEMBL
SMART FN3 UniProtKB/TrEMBL
  IGc2 UniProtKB/TrEMBL
  SM00409 UniProtKB/TrEMBL
Superfamily-SCOP SSF48726 UniProtKB/TrEMBL
  SSF49265 UniProtKB/TrEMBL
UniProt A0A286ZK06_PIG UniProtKB/TrEMBL
  A0A287A887_PIG UniProtKB/TrEMBL
  A0A287BSB6_PIG UniProtKB/TrEMBL
  A0A5G2QZI7_PIG UniProtKB/TrEMBL
  F1RVL5_PIG UniProtKB/TrEMBL