C1QA (complement C1q A chain) - Rat Genome Database

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Gene: C1QA (complement C1q A chain) Sus scrofa
Analyze
Symbol: C1QA
Name: complement C1q A chain
RGD ID: 13980406
Description: INVOLVED IN complement activation, classical pathway (ortholog); response to iron ion (ortholog); ASSOCIATED WITH Brain Injuries (ortholog); C1q Deficiency (ortholog); COVID-19 (ortholog); FOUND IN complement component C1q complex (ortholog)
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: complement C1q subcomponent subunit A; complement C1qA
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl680,586,280 - 80,589,204 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1680,586,259 - 80,589,213 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2674,610,025 - 74,612,855 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

Genomics

Comparative Map Data
C1QA
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl680,586,280 - 80,589,204 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1680,586,259 - 80,589,213 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2674,610,025 - 74,612,855 (+)NCBISscrofa10.2Sscrofa10.2susScr3
C1QA
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38122,636,463 - 22,639,678 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl122,635,077 - 22,639,678 (+)EnsemblGRCh38hg38GRCh38
GRCh37122,962,956 - 22,966,171 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36122,835,705 - 22,838,762 (+)NCBINCBI36hg18NCBI36
Build 34122,709,405 - 22,711,405NCBI
Celera121,287,826 - 21,290,883 (+)NCBI
Cytogenetic Map1p36.12NCBI
HuRef121,207,463 - 21,210,520 (+)NCBIHuRef
CHM1_1123,075,637 - 23,078,694 (+)NCBICHM1_1
T2T-CHM13v2.0122,461,488 - 22,464,703 (+)NCBI
C1qa
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394136,623,227 - 136,626,155 (-)NCBIGRCm39mm39
GRCm39 Ensembl4136,623,228 - 136,626,114 (-)Ensembl
GRCm384136,895,916 - 136,898,844 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4136,895,917 - 136,898,803 (-)EnsemblGRCm38mm10GRCm38
MGSCv374136,451,831 - 136,454,759 (-)NCBIGRCm37mm9NCBIm37
MGSCv364136,167,994 - 136,170,836 (-)NCBImm8
Celera4135,103,233 - 135,106,157 (-)NCBICelera
Cytogenetic Map4D3NCBI
cM Map469.05NCBI
C1qa
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.25149,133,635 - 149,136,482 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl5149,133,636 - 149,136,534 (-)Ensembl
Rnor_6.05155,261,254 - 155,264,101 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5155,261,250 - 155,264,143 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05159,023,753 - 159,026,600 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45155,662,333 - 155,665,180 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.15155,672,371 - 155,675,219 (-)NCBI
Celera5147,531,382 - 147,534,229 (-)NCBICelera
Cytogenetic Map5q36NCBI
C1qa
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554522,752,970 - 2,756,488 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554522,753,362 - 2,756,220 (+)NCBIChiLan1.0ChiLan1.0
C1QA
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1122,770,557 - 22,773,682 (+)NCBIpanpan1.1PanPan1.1panPan2
Mhudiblu_PPA_v0121,821,927 - 21,825,020 (+)NCBIMhudiblu_PPA_v0panPan3
C1QA
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1276,668,086 - 76,671,082 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl276,668,217 - 76,670,977 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha273,172,967 - 73,175,970 (-)NCBI
ROS_Cfam_1.0277,227,331 - 77,230,335 (-)NCBI
ROS_Cfam_1.0 Ensembl277,227,333 - 77,230,230 (-)Ensembl
UMICH_Zoey_3.1274,048,204 - 74,051,200 (-)NCBI
UNSW_CanFamBas_1.0275,056,639 - 75,059,641 (-)NCBI
UU_Cfam_GSD_1.0276,060,247 - 76,063,252 (-)NCBI
C1qa
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505842,183,130 - 42,185,545 (+)NCBI
SpeTri2.0NW_0049364748,007,953 - 8,010,591 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
C1QA
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.120110,024,847 - 110,027,868 (-)NCBIChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660336,286,037 - 6,289,144 (+)NCBIVero_WHO_p1.0
C1qa
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247647,363,567 - 7,366,617 (+)EnsemblHetGla_female_1.0hetGla2
HetGla 1.0NW_0046247647,363,615 - 7,366,408 (+)NCBIHetGla_female_1.0hetGla2


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 9 2 5 5 1 3
Low 1 2 3 2 18 2 2
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSSSCT00000062481   ⟹   ENSSSCP00000058150
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl680,586,280 - 80,589,204 (+)Ensembl
RefSeq Acc Id: NM_001003924   ⟹   NP_001003924
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1680,586,259 - 80,589,089 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021093596   ⟹   XP_020949255
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1680,586,280 - 80,589,213 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001003924 (Get FASTA)   NCBI Sequence Viewer  
  XP_020949255 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAR20892 (Get FASTA)   NCBI Sequence Viewer  
  Q69DL0 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: NP_001003924   ⟸   NM_001003924
- Peptide Label: precursor
- UniProtKB: Q69DL0 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_020949255   ⟸   XM_021093596
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: ENSSSCP00000058150   ⟸   ENSSSCT00000062481
Protein Domains
C1q   Collagen-like


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000003524 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00005028997 UniProtKB/TrEMBL
  ENSSSCG00015059869 UniProtKB/TrEMBL
  ENSSSCG00025027898 UniProtKB/TrEMBL
  ENSSSCG00030046841 UniProtKB/TrEMBL
  ENSSSCG00035079596 UniProtKB/TrEMBL
  ENSSSCG00040072459 UniProtKB/TrEMBL
  ENSSSCG00045020527 UniProtKB/TrEMBL
  ENSSSCG00050072493 UniProtKB/TrEMBL
  ENSSSCG00055029482 UniProtKB/TrEMBL
  ENSSSCG00060058429 UniProtKB/TrEMBL
  ENSSSCG00065001916 UniProtKB/TrEMBL
  ENSSSCG00070028107 UniProtKB/TrEMBL
Ensembl Protein ENSSSCP00000058150 ENTREZGENE
  ENSSSCP00000058150.1 UniProtKB/TrEMBL
  ENSSSCP00005028287.1 UniProtKB/TrEMBL
  ENSSSCP00015032356.1 UniProtKB/TrEMBL
  ENSSSCP00025015908.1 UniProtKB/TrEMBL
  ENSSSCP00030029849.1 UniProtKB/TrEMBL
  ENSSSCP00035047229.1 UniProtKB/TrEMBL
  ENSSSCP00040044759.1 UniProtKB/TrEMBL
  ENSSSCP00045024279.1 UniProtKB/TrEMBL
  ENSSSCP00050042793.1 UniProtKB/TrEMBL
  ENSSSCP00055046857.1 UniProtKB/TrEMBL
  ENSSSCP00060034507.1 UniProtKB/TrEMBL
  ENSSSCP00065000801.1 UniProtKB/TrEMBL
  ENSSSCP00070047915.1 UniProtKB/TrEMBL
  ENSSSCP00070047918.1 UniProtKB/TrEMBL
  ENSSSCP00070047920.1 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000062481 ENTREZGENE
  ENSSSCT00000062481.2 UniProtKB/TrEMBL
  ENSSSCT00005046036.1 UniProtKB/TrEMBL
  ENSSSCT00015080050.1 UniProtKB/TrEMBL
  ENSSSCT00025037830.1 UniProtKB/TrEMBL
  ENSSSCT00030065328.1 UniProtKB/TrEMBL
  ENSSSCT00035108919.1 UniProtKB/TrEMBL
  ENSSSCT00040099769.1 UniProtKB/TrEMBL
  ENSSSCT00045034994.1 UniProtKB/TrEMBL
  ENSSSCT00050098978.1 UniProtKB/TrEMBL
  ENSSSCT00055058549.1 UniProtKB/TrEMBL
  ENSSSCT00060079697.1 UniProtKB/TrEMBL
  ENSSSCT00065002392.1 UniProtKB/TrEMBL
  ENSSSCT00070056389.1 UniProtKB/TrEMBL
  ENSSSCT00070056392.1 UniProtKB/TrEMBL
  ENSSSCT00070056394.1 UniProtKB/TrEMBL
Gene3D-CATH 2.60.120.40 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro C1q_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Collagen UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Complement_C1q_A UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Tumour_necrosis_fac-like_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report ssc:445461 UniProtKB/Swiss-Prot
NCBI Gene C1QA ENTREZGENE
PANTHER PTHR15427:SF26 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam C1q UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Collagen UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PRINTS COMPLEMNTC1Q UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE C1Q UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART C1Q UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF49842 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A287BNF7_PIG UniProtKB/TrEMBL
  A0A4X1W0J2_PIG UniProtKB/TrEMBL
  A0A4X1W1V4_PIG UniProtKB/TrEMBL
  A0A4X1W1W0_PIG UniProtKB/TrEMBL
  A0A8D0JQS8_PIG UniProtKB/TrEMBL
  C1QA_PIG UniProtKB/Swiss-Prot, ENTREZGENE
VGNC ID VGNC:96926 ENTREZGENE