LOC100624788 (UDP-glucuronosyltransferase 2A1) - Rat Genome Database

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Gene: LOC100624788 (UDP-glucuronosyltransferase 2A1) Sus scrofa
Analyze
Symbol: LOC100624788
Name: UDP-glucuronosyltransferase 2A1
RGD ID: 13979923
Description: ENCODES a protein that exhibits glucuronosyltransferase activity (inferred); glycosyltransferase activity (inferred); transferase activity (inferred); INVOLVED IN cellular glucuronidation (ortholog); FOUND IN integral component of membrane (inferred); membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Also known as: UDP glucuronosyltransferase 2 family, polypeptide A1, complex locus; UDP-glucuronosyltransferase 2A3; UGT2A1
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1866,646,241 - 66,689,685 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2870,984,983 - 71,021,850 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

Genomics

Comparative Map Data
LOC100624788
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1866,646,241 - 66,689,685 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2870,984,983 - 71,021,850 (-)NCBISscrofa10.2Sscrofa10.2susScr3
UGT2A3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl468,928,463 - 68,951,804 (-)EnsemblGRCh38hg38GRCh38
GRCh38468,928,460 - 68,951,804 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh37469,794,181 - 69,817,522 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36469,828,756 - 69,852,093 (-)NCBINCBI36hg18NCBI36
Celera467,135,540 - 67,158,847 (-)NCBI
Cytogenetic Map4q13.2NCBI
HuRef465,589,708 - 65,613,015 (-)NCBIHuRef
CHM1_1469,830,758 - 69,854,100 (-)NCBICHM1_1
Ugt2a3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39587,472,831 - 87,485,054 (-)NCBIGRCm39mm39
GRCm39 Ensembl587,472,831 - 87,485,054 (-)Ensembl
GRCm38587,324,972 - 87,337,195 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl587,324,972 - 87,337,195 (-)EnsemblGRCm38mm10GRCm38
MGSCv37587,753,997 - 87,766,220 (-)NCBIGRCm37mm9NCBIm37
MGSCv36588,399,533 - 88,411,737 (-)NCBImm8
Celera584,541,315 - 84,553,528 (-)NCBICelera
Cytogenetic Map5E1NCBI
Ugt2a3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21420,572,825 - 20,590,295 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl1420,572,808 - 20,590,729 (+)Ensembl
Rnor_6.01422,251,507 - 22,267,899 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1422,192,970 - 22,619,968 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01422,165,755 - 22,182,147 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41422,099,350 - 22,116,820 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11422,099,349 - 22,116,820 (+)NCBI
Celera1419,976,311 - 19,993,782 (+)NCBICelera
Cytogenetic Map14p21NCBI
UGT2A3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1461,613,083 - 61,636,511 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl461,612,932 - 61,636,511 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0455,157,059 - 55,180,507 (+)NCBIMhudiblu_PPA_v0panPan3
UGT2A3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11359,036,107 - 59,057,684 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1358,885,246 - 58,886,599 (-)NCBI


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system nervous system renal system reproductive system respiratory system
High
Medium 3
Low 5
Below cutoff 1 1 3 2 15 1 2 1

Sequence


Reference Sequences
RefSeq Acc Id: XM_003356958   ⟹   XP_003357006
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1866,646,241 - 66,689,685 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005656509   ⟹   XP_005656566
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1866,648,828 - 66,663,421 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_003357006 (Get FASTA)   NCBI Sequence Viewer  
  XP_005656566 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_003357006   ⟸   XM_003356958
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_005656566   ⟸   XM_005656509
- Peptide Label: isoform X1
- Sequence:
Protein Domains
UDPGT


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000034976 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSSSCP00000051233 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCP00000062775 UniProtKB/TrEMBL
  ENSSSCP00000073784 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000051960 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCT00000073535 UniProtKB/TrEMBL
  ENSSSCT00000076855 UniProtKB/TrEMBL
InterPro UDP_glucos_trans UniProtKB/TrEMBL
  UDP_glycos_trans_CS UniProtKB/TrEMBL
NCBI Gene LOC100624788 ENTREZGENE
Pfam UDPGT UniProtKB/TrEMBL
PROSITE UDPGT UniProtKB/TrEMBL
UniProt A0A287B562_PIG UniProtKB/TrEMBL
  A0A5G2QX61_PIG UniProtKB/TrEMBL
  A0A5G2RMH0_PIG UniProtKB/TrEMBL