CDK18 (cyclin dependent kinase 18) - Rat Genome Database

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Gene: CDK18 (cyclin dependent kinase 18) Sus scrofa
Analyze
Symbol: CDK18
Name: cyclin dependent kinase 18
RGD ID: 13979177
Description: ENCODES a protein that exhibits ATP binding (inferred); cyclin-dependent protein serine/threonine kinase activity (inferred); kinase activity (inferred); INVOLVED IN positive regulation of myelination (inferred); regulation of cell cycle (inferred); ASSOCIATED WITH autistic disorder (ortholog); familial adult myoclonic epilepsy 5 (ortholog); gastrointestinal stromal tumor (ortholog); FOUND IN cytoplasm (inferred); nucleus (inferred); INTERACTS WITH deoxynivalenol
Type: protein-coding
RefSeq Status: MODEL
Previously known as: cyclin-dependent kinase 18
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl966,175,678 - 66,202,795 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1966,175,539 - 66,202,799 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2972,427,470 - 72,448,210 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (IBA,IEA)
nucleus  (IBA,IEA)

References
Additional References at PubMed
PMID:14681463   PMID:17145712   PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
CDK18
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl966,175,678 - 66,202,795 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1966,175,539 - 66,202,799 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2972,427,470 - 72,448,210 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CDK18
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381205,504,669 - 205,532,790 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1205,504,596 - 205,532,793 (+)EnsemblGRCh38hg38GRCh38
GRCh371205,473,797 - 205,501,918 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361203,740,350 - 203,768,541 (+)NCBINCBI36Build 36hg18NCBI36
Celera1178,608,860 - 178,637,096 (+)NCBICelera
Cytogenetic Map1q32.1NCBI
HuRef1176,639,088 - 176,667,323 (+)NCBIHuRef
CHM1_11206,896,957 - 206,925,197 (+)NCBICHM1_1
T2T-CHM13v2.01204,769,067 - 204,797,187 (+)NCBIT2T-CHM13v2.0
Cdk18
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391132,041,285 - 132,067,433 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1132,039,975 - 132,067,422 (-)EnsemblGRCm39 Ensembl
GRCm381132,113,547 - 132,139,698 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1132,112,237 - 132,139,684 (-)EnsemblGRCm38mm10GRCm38
MGSCv371134,010,124 - 134,036,262 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361133,941,206 - 133,967,230 (-)NCBIMGSCv36mm8
Celera1134,717,874 - 134,746,292 (-)NCBICelera
Cytogenetic Map1E4NCBI
cM Map157.24NCBI
Cdk18
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81346,107,763 - 46,140,705 (-)NCBIGRCr8
mRatBN7.21343,555,597 - 43,582,210 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1343,556,748 - 43,588,525 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1346,164,010 - 46,172,223 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01347,452,154 - 47,460,367 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01344,712,855 - 44,721,069 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01348,893,525 - 48,926,673 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1348,893,412 - 48,927,483 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01353,963,482 - 53,996,384 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41344,996,447 - 45,004,813 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11345,010,140 - 45,052,495 (-)NCBI
Celera1343,894,168 - 43,902,442 (-)NCBICelera
Cytogenetic Map13q13NCBI
Cdk18
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540641,228,678 - 41,252,543 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540641,228,802 - 41,256,413 (+)NCBIChiLan1.0ChiLan1.0
CDK18
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2143,836,989 - 43,865,185 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1143,802,241 - 43,830,451 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01181,113,560 - 181,141,758 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11185,399,156 - 185,427,631 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1185,399,162 - 185,427,631 (+)Ensemblpanpan1.1panPan2
CDK18
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1381,978,128 - 2,005,319 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl381,990,061 - 2,002,321 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha382,069,268 - 2,096,515 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0381,972,641 - 1,999,890 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl381,974,237 - 1,999,888 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1381,970,139 - 1,994,040 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0382,361,384 - 2,385,523 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0382,559,737 - 2,587,029 (+)NCBIUU_Cfam_GSD_1.0
Cdk18
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934469,651,482 - 69,678,141 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365576,891,806 - 6,918,429 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365576,891,764 - 6,918,423 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CDK18
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12523,809,633 - 23,838,350 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2523,809,352 - 23,838,345 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605524,508,636 - 24,537,341 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cdk18
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248075,684,661 - 5,691,456 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248075,683,454 - 5,706,823 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in CDK18
697 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium
Low 10 4 3 5 22 2 2 3
Below cutoff 2 1 1

Sequence


RefSeq Acc Id: ENSSSCT00000016661   ⟹   ENSSSCP00000016215
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl966,175,678 - 66,202,795 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000041512   ⟹   ENSSSCP00000054931
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl966,175,773 - 66,201,901 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000069747   ⟹   ENSSSCP00000072388
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl966,193,203 - 66,202,799 (+)Ensembl
RefSeq Acc Id: XM_021063280   ⟹   XP_020918939
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1966,175,539 - 66,202,647 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021063281   ⟹   XP_020918940
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1966,175,764 - 66,202,647 (+)NCBI
Sequence:
RefSeq Acc Id: XR_002335787
Type: NON-CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1966,175,758 - 66,202,799 (+)NCBI
Sequence:
RefSeq Acc Id: XR_002335788
Type: NON-CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1966,175,758 - 66,202,647 (+)NCBI
Sequence:
RefSeq Acc Id: XP_020918939   ⟸   XM_021063280
- UniProtKB: A0A8D0N9F1 (UniProtKB/TrEMBL),   A0A8D1JMC9 (UniProtKB/TrEMBL),   A0A8D1UF23 (UniProtKB/TrEMBL),   F1S357 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020918940   ⟸   XM_021063281
- UniProtKB: A0A8D0N9F1 (UniProtKB/TrEMBL),   A0A8D1JMC9 (UniProtKB/TrEMBL),   A0A8D1UF23 (UniProtKB/TrEMBL),   F1S357 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000054931   ⟸   ENSSSCT00000041512
RefSeq Acc Id: ENSSSCP00000016215   ⟸   ENSSSCT00000016661
RefSeq Acc Id: ENSSSCP00000072388   ⟸   ENSSSCT00000069747
Protein Domains
Protein kinase


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000015290 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00015029160 UniProtKB/TrEMBL
  ENSSSCG00025000648 UniProtKB/TrEMBL
  ENSSSCG00035019529 UniProtKB/TrEMBL
  ENSSSCG00040029177 UniProtKB/TrEMBL
  ENSSSCG00045039278 UniProtKB/TrEMBL
  ENSSSCG00055030556 UniProtKB/TrEMBL
  ENSSSCG00065071463 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000016661 ENTREZGENE
  ENSSSCT00000016661.4 UniProtKB/TrEMBL
  ENSSSCT00015038650.1 UniProtKB/TrEMBL
  ENSSSCT00015038711.1 UniProtKB/TrEMBL
  ENSSSCT00015038797.1 UniProtKB/TrEMBL
  ENSSSCT00015038918.1 UniProtKB/TrEMBL
  ENSSSCT00025000782.1 UniProtKB/TrEMBL
  ENSSSCT00035025302.1 UniProtKB/TrEMBL
  ENSSSCT00035025309.1 UniProtKB/TrEMBL
  ENSSSCT00040039223.1 UniProtKB/TrEMBL
  ENSSSCT00040039275.1 UniProtKB/TrEMBL
  ENSSSCT00045068368.1 UniProtKB/TrEMBL
  ENSSSCT00055060873.1 UniProtKB/TrEMBL
  ENSSSCT00055060877.1 UniProtKB/TrEMBL
  ENSSSCT00065098198.1 UniProtKB/TrEMBL
  ENSSSCT00065098209.1 UniProtKB/TrEMBL
Gene3D-CATH Transferase(Phosphotransferase) domain 1 UniProtKB/TrEMBL
InterPro Kinase-like_dom_sf UniProtKB/TrEMBL
  Prot_kinase_dom UniProtKB/TrEMBL
  Protein_kinase_ATP_BS UniProtKB/TrEMBL
  Ser/Thr_kinase_AS UniProtKB/TrEMBL
NCBI Gene CDK18 ENTREZGENE
PANTHER CELL DIVISION PROTEIN KINASE UniProtKB/TrEMBL
  CYCLIN-DEPENDENT KINASE 18 UniProtKB/TrEMBL
Pfam Pkinase UniProtKB/TrEMBL
PROSITE PROTEIN_KINASE_ATP UniProtKB/TrEMBL
  PROTEIN_KINASE_DOM UniProtKB/TrEMBL
  PROTEIN_KINASE_ST UniProtKB/TrEMBL
SMART S_TKc UniProtKB/TrEMBL
Superfamily-SCOP SSF56112 UniProtKB/TrEMBL
UniProt A0A8D0N9F1 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0NAD7_PIG UniProtKB/TrEMBL
  A0A8D0NAF8_PIG UniProtKB/TrEMBL
  A0A8D0NE56_PIG UniProtKB/TrEMBL
  A0A8D1JMC9 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1UF23 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D2CG93_PIG UniProtKB/TrEMBL
  F1S357 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:86501 ENTREZGENE