EIF3J (eukaryotic translation initiation factor 3 subunit J) - Rat Genome Database

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Gene: EIF3J (eukaryotic translation initiation factor 3 subunit J) Sus scrofa
Analyze
Symbol: EIF3J
Name: eukaryotic translation initiation factor 3 subunit J
RGD ID: 13978587
Description: ENCODES a protein that exhibits identical protein binding (inferred); translation initiation factor activity (inferred); INVOLVED IN cytoplasmic translational initiation (inferred); formation of cytoplasmic translation initiation complex (inferred); translation (inferred); PARTICIPATES IN translation initiation pathway; ASSOCIATED WITH Bloom syndrome (ortholog); colorectal cancer (ortholog); genetic disease (ortholog); FOUND IN eukaryotic translation initiation factor 3 complex (ortholog); INTERACTS WITH deoxynivalenol
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1126,997,227 - 127,019,147 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11126,998,613 - 127,019,264 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21141,722,065 - 141,742,772 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:14681463   PMID:15679890   PMID:17145712   PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
EIF3J
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1126,997,227 - 127,019,147 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11126,998,613 - 127,019,264 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21141,722,065 - 141,742,772 (-)NCBISscrofa10.2Sscrofa10.2susScr3
EIF3J
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381544,537,147 - 44,562,803 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1544,537,125 - 44,563,029 (+)EnsemblGRCh38hg38GRCh38
GRCh371544,829,345 - 44,855,001 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361542,616,558 - 42,642,293 (+)NCBINCBI36Build 36hg18NCBI36
Build 341542,616,624 - 42,642,291NCBI
Celera1521,719,022 - 21,744,754 (+)NCBICelera
Cytogenetic Map15q21.1NCBI
HuRef1521,653,092 - 21,678,661 (+)NCBIHuRef
CHM1_11544,947,371 - 44,973,105 (+)NCBICHM1_1
T2T-CHM13v2.01542,345,115 - 42,370,769 (+)NCBIT2T-CHM13v2.0
Eif3j1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392121,859,061 - 121,884,113 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2121,859,027 - 121,887,079 (+)EnsemblGRCm39 Ensembl
GRCm382122,028,580 - 122,053,632 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2122,028,546 - 122,056,598 (+)EnsemblGRCm38mm10GRCm38
MGSCv372121,854,359 - 121,879,365 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362121,738,904 - 121,745,072 (+)NCBIMGSCv36mm8
Celera2123,177,013 - 123,201,303 (+)NCBICelera
Cytogenetic Map2E5NCBI
cM Map260.49NCBI
Eif3j
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83129,438,715 - 129,460,953 (+)NCBIGRCr8
mRatBN7.23108,985,103 - 109,007,341 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3108,985,118 - 109,007,953 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx3112,659,069 - 112,681,310 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03121,254,605 - 121,276,846 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03118,914,979 - 118,937,220 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.03113,976,687 - 113,998,925 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3113,976,687 - 113,998,922 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03120,516,661 - 120,538,898 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43108,816,023 - 108,838,261 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.13108,721,632 - 108,744,467 (+)NCBI
Celera3107,883,908 - 107,906,146 (+)NCBICelera
Cytogenetic Map3q35NCBI
Eif3j
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541611,067,782 - 11,084,305 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541611,066,030 - 11,085,054 (+)NCBIChiLan1.0ChiLan1.0
EIF3J
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21633,785,476 - 33,810,866 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11537,948,296 - 37,973,559 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01523,493,363 - 23,518,705 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11541,663,851 - 41,688,188 (+)NCBIpanpan1.1PanPan1.1panPan2
EIF3J
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13011,207,620 - 11,233,106 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3011,207,651 - 11,232,717 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3011,264,466 - 11,290,386 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03011,344,109 - 11,370,334 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3011,344,203 - 11,373,922 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13011,251,179 - 11,277,716 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03011,373,935 - 11,400,134 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03011,493,428 - 11,519,374 (+)NCBIUU_Cfam_GSD_1.0
Eif3j
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864089,669,509 - 89,693,341 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364717,517,540 - 7,540,371 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364717,517,577 - 7,541,965 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
EIF3J
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12638,481,842 - 38,505,762 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_023666048102,536,064 - 102,561,475 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Eif3j
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462480411,670,983 - 11,694,269 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in EIF3J
317 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 10 4 3 5 2 23 2 3 3
Low
Below cutoff

Sequence


RefSeq Acc Id: ENSSSCT00000005181   ⟹   ENSSSCP00000005055
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1126,997,227 - 127,019,147 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000022579   ⟹   ENSSSCP00000022557
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1126,997,227 - 127,019,147 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000052266   ⟹   ENSSSCP00000053256
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1126,997,227 - 127,006,821 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000066514   ⟹   ENSSSCP00000070897
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1126,997,227 - 127,019,147 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000082446   ⟹   ENSSSCP00000070073
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1126,997,227 - 127,019,147 (-)Ensembl
RefSeq Acc Id: XM_003121533   ⟹   XP_003121581
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11126,998,613 - 127,019,264 (-)NCBI
Sequence:
RefSeq Acc Id: XP_003121581   ⟸   XM_003121533
- UniProtKB: A0A4X1VCB2 (UniProtKB/TrEMBL),   A0A5G2R3H6 (UniProtKB/TrEMBL),   A0A8D1K1U4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000005055   ⟸   ENSSSCT00000005181
RefSeq Acc Id: ENSSSCP00000070897   ⟸   ENSSSCT00000066514
RefSeq Acc Id: ENSSSCP00000053256   ⟸   ENSSSCT00000052266
RefSeq Acc Id: ENSSSCP00000022557   ⟸   ENSSSCT00000022579
RefSeq Acc Id: ENSSSCP00000070073   ⟸   ENSSSCT00000082446


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000004691 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00005014395 UniProtKB/TrEMBL
  ENSSSCG00015061945 UniProtKB/TrEMBL
  ENSSSCG00025056200 UniProtKB/TrEMBL
  ENSSSCG00030068856 UniProtKB/TrEMBL
  ENSSSCG00035038939 UniProtKB/TrEMBL
  ENSSSCG00040028175 UniProtKB/TrEMBL
  ENSSSCG00045023471 UniProtKB/TrEMBL
  ENSSSCG00050005302 UniProtKB/TrEMBL
  ENSSSCG00055006492 UniProtKB/TrEMBL
  ENSSSCG00060019871 UniProtKB/TrEMBL
  ENSSSCG00065037554 UniProtKB/TrEMBL
  ENSSSCG00070023358 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000005181.5 UniProtKB/TrEMBL
  ENSSSCT00000022579.4 UniProtKB/TrEMBL
  ENSSSCT00000052266.3 UniProtKB/TrEMBL
  ENSSSCT00000066514 ENTREZGENE
  ENSSSCT00000066514.2 UniProtKB/TrEMBL
  ENSSSCT00000082446.2 UniProtKB/TrEMBL
  ENSSSCT00005022636.1 UniProtKB/TrEMBL
  ENSSSCT00005022679.1 UniProtKB/TrEMBL
  ENSSSCT00015083470.1 UniProtKB/TrEMBL
  ENSSSCT00015083644.1 UniProtKB/TrEMBL
  ENSSSCT00025077126.1 UniProtKB/TrEMBL
  ENSSSCT00025077468.1 UniProtKB/TrEMBL
  ENSSSCT00030096410.1 UniProtKB/TrEMBL
  ENSSSCT00030096478.1 UniProtKB/TrEMBL
  ENSSSCT00035051705.1 UniProtKB/TrEMBL
  ENSSSCT00035051717.1 UniProtKB/TrEMBL
  ENSSSCT00040038084.1 UniProtKB/TrEMBL
  ENSSSCT00040038164.1 UniProtKB/TrEMBL
  ENSSSCT00045040259.1 UniProtKB/TrEMBL
  ENSSSCT00045040501.1 UniProtKB/TrEMBL
  ENSSSCT00050007279.1 UniProtKB/TrEMBL
  ENSSSCT00050007282.1 UniProtKB/TrEMBL
  ENSSSCT00050007286.1 UniProtKB/TrEMBL
  ENSSSCT00055012703.1 UniProtKB/TrEMBL
  ENSSSCT00055012802.1 UniProtKB/TrEMBL
  ENSSSCT00060026895.1 UniProtKB/TrEMBL
  ENSSSCT00060026905.1 UniProtKB/TrEMBL
  ENSSSCT00065051312.1 UniProtKB/TrEMBL
  ENSSSCT00065051340.1 UniProtKB/TrEMBL
  ENSSSCT00070046590.1 UniProtKB/TrEMBL
  ENSSSCT00070046593.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.246.60 UniProtKB/TrEMBL
InterPro eIF3-like_dom_sf UniProtKB/TrEMBL
  eIF3j UniProtKB/TrEMBL
KEGG Report ssc:100517070 UniProtKB/TrEMBL
NCBI Gene EIF3J ENTREZGENE
PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT J UniProtKB/TrEMBL
  PTHR21681 UniProtKB/TrEMBL
Pfam eIF3_subunit UniProtKB/TrEMBL
UniProt A0A4X1VCB2 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1VCI5_PIG UniProtKB/TrEMBL
  A0A4X1VD81_PIG UniProtKB/TrEMBL
  A0A5G2QYW6_PIG UniProtKB/TrEMBL
  A0A5G2R3H6 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0IHP4_PIG UniProtKB/TrEMBL
  A0A8D1JVQ0_PIG UniProtKB/TrEMBL
  A0A8D1JXT9_PIG UniProtKB/TrEMBL
  A0A8D1K1U4 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1YP01_PIG UniProtKB/TrEMBL
  F1SN05_PIG UniProtKB/TrEMBL
  I3LER8_PIG UniProtKB/TrEMBL
UniProt Secondary A0A287BAX8 UniProtKB/TrEMBL
VGNC ID VGNC:87621 ENTREZGENE