LOC100620869 (zinc finger protein 239) - Rat Genome Database

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Gene: LOC100620869 (zinc finger protein 239) Sus scrofa
Analyze
Symbol: LOC100620869
Name: zinc finger protein 239
RGD ID: 13977431
Description: ENCODES a protein that exhibits DNA-binding transcription factor activity, RNA polymerase II-specific (inferred); RNA polymerase II cis-regulatory region sequence-specific DNA binding (inferred)
Type: protein-coding
RefSeq Status: MODEL
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1660,589,165 - 60,596,706 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2655,747,571 - 55,755,322 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

References
Additional References at PubMed
PMID:30032202  


Genomics

Variants

.
Variants in LOC100620869
123 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system
High
Medium
Low 1 9 2 1
Below cutoff 4 2 1 1 9

Sequence


RefSeq Acc Id: XM_003356078   ⟹   XP_003356126
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1660,589,165 - 60,596,706 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005664876   ⟹   XP_005664933
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1660,589,165 - 60,596,706 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_003356126 (Get FASTA)   NCBI Sequence Viewer  
  XP_005664933 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSSCP00035015378.1
  ENSSSCP00060038889.1
RefSeq Acc Id: XP_005664933   ⟸   XM_005664876
- UniProtKB: A0A480REK1 (UniProtKB/TrEMBL),   A0A8D1WFC7 (UniProtKB/TrEMBL),   A0A8D0ZII0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_003356126   ⟸   XM_003356078
- UniProtKB: A0A480REK1 (UniProtKB/TrEMBL),   A0A8D1WFC7 (UniProtKB/TrEMBL),   A0A8D0ZII0 (UniProtKB/TrEMBL)
- Sequence:
Protein Domains
C2H2-type


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00035029117 UniProtKB/TrEMBL
  ENSSSCG00060065717 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00035038523.1 UniProtKB/TrEMBL
  ENSSSCT00060089762.1 UniProtKB/TrEMBL
Gene3D-CATH Classic Zinc Finger UniProtKB/TrEMBL
InterPro Znf_C2H2_sf UniProtKB/TrEMBL
  Znf_C2H2_type UniProtKB/TrEMBL
KEGG Report ssc:100620869 UniProtKB/TrEMBL
NCBI Gene LOC100620869 ENTREZGENE
PANTHER ZINC FINGER PROTEIN UniProtKB/TrEMBL
  ZINC FINGER PROTEIN 281-RELATED UniProtKB/TrEMBL
Pfam zf-C2H2 UniProtKB/TrEMBL
PROSITE ZINC_FINGER_C2H2_1 UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_2 UniProtKB/TrEMBL
SMART ZnF_C2H2 UniProtKB/TrEMBL
Superfamily-SCOP SSF57667 UniProtKB/TrEMBL
UniProt A0A480REK1 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0ZII0 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1WFC7 ENTREZGENE, UniProtKB/TrEMBL