CDC7 (cell division cycle 7) - Rat Genome Database

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Gene: CDC7 (cell division cycle 7) Sus scrofa
Analyze
Symbol: CDC7
Name: cell division cycle 7
RGD ID: 13977353
Description: ENCODES a protein that exhibits ATP binding (inferred); kinase activity (inferred); nucleotide binding (inferred); INVOLVED IN cell cycle phase transition (inferred); cell division (inferred); mitotic DNA damage checkpoint signaling (inferred); ASSOCIATED WITH genetic disease (ortholog); primary ovarian insufficiency (ortholog); FOUND IN cytoplasm (inferred); intercellular bridge (inferred); mitotic spindle (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: cell division cycle 7-related protein kinase
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl4125,432,772 - 125,459,288 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.14125,431,454 - 125,459,367 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.24136,912,609 - 136,938,483 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:14681463   PMID:17145712   PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
CDC7
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl4125,432,772 - 125,459,288 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.14125,431,454 - 125,459,367 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.24136,912,609 - 136,938,483 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CDC7
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38191,500,851 - 91,525,764 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl191,500,851 - 91,525,764 (+)EnsemblGRCh38hg38GRCh38
GRCh37191,966,408 - 91,991,321 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36191,739,032 - 91,763,902 (+)NCBINCBI36Build 36hg18NCBI36
Build 34191,678,464 - 91,703,334NCBI
Celera190,213,111 - 90,238,021 (+)NCBICelera
Cytogenetic Map1p22.1NCBI
HuRef190,085,053 - 90,109,963 (+)NCBIHuRef
CHM1_1192,081,241 - 92,106,165 (+)NCBICHM1_1
T2T-CHM13v2.0191,343,613 - 91,370,396 (+)NCBIT2T-CHM13v2.0
Cdc7
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395107,112,201 - 107,132,298 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5107,112,188 - 107,132,298 (+)EnsemblGRCm39 Ensembl
GRCm385106,964,315 - 106,984,440 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5106,964,322 - 106,984,432 (+)EnsemblGRCm38mm10GRCm38
MGSCv375107,393,341 - 107,413,450 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv365107,204,624 - 107,224,733 (+)NCBIMGSCv36mm8
Celera5104,076,218 - 104,096,189 (+)NCBICelera
Cytogenetic Map5E5NCBI
cM Map551.43NCBI
Cdc7
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8142,949,538 - 2,969,656 (-)NCBIGRCr8
mRatBN7.2142,804,660 - 2,824,796 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl142,804,661 - 2,824,778 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx142,680,036 - 2,702,307 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0143,981,677 - 4,003,941 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0142,684,267 - 2,704,681 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0143,826,658 - 3,846,891 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl143,826,659 - 3,846,891 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0143,823,736 - 3,843,969 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4143,421,621 - 3,441,738 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1143,422,647 - 3,441,061 (-)NCBI
Celera142,820,133 - 2,840,304 (-)NCBICelera
Cytogenetic Map14p22NCBI
Cdc7
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554232,902,048 - 2,924,573 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554232,902,352 - 2,923,743 (-)NCBIChiLan1.0ChiLan1.0
CDC7
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21135,502,492 - 135,529,499 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11134,657,566 - 134,684,562 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0194,158,628 - 94,183,537 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1192,902,323 - 92,927,203 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl192,902,631 - 92,927,203 (+)Ensemblpanpan1.1panPan2
CDC7
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1657,336,165 - 57,362,478 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl657,337,407 - 57,362,757 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha660,041,727 - 60,068,018 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0657,719,521 - 57,745,854 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl657,719,529 - 57,745,979 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1657,395,417 - 57,421,700 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0657,370,751 - 57,397,009 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0657,834,393 - 57,860,883 (-)NCBIUU_Cfam_GSD_1.0
Cdc7
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405058101,432,750 - 101,504,358 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365377,488,776 - 7,514,322 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365377,445,882 - 7,515,196 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CDC7
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12041,714,250 - 41,739,159 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2041,715,572 - 41,739,138 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603376,257,292 - 76,282,191 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cdc7
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247426,261,762 - 6,302,879 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247426,211,095 - 6,302,369 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in CDC7
1134 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium
Low 10 4 3 5 2 23 2 3 3
Below cutoff

Sequence


RefSeq Acc Id: ENSSSCT00000025161   ⟹   ENSSSCP00000022010
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl4125,432,772 - 125,453,747 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000039605   ⟹   ENSSSCP00000038701
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl4125,432,772 - 125,459,062 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000083884   ⟹   ENSSSCP00000061636
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl4125,417,098 - 125,475,251 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000090968   ⟹   ENSSSCP00000068885
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl4125,433,982 - 125,459,288 (-)Ensembl
RefSeq Acc Id: XM_003125912   ⟹   XP_003125960
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.14125,431,454 - 125,459,346 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013997378   ⟹   XP_013852832
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.14125,431,454 - 125,459,359 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013997379   ⟹   XP_013852833
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.14125,431,454 - 125,459,321 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013997380   ⟹   XP_013852834
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.14125,431,454 - 125,459,141 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013997381   ⟹   XP_013852835
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.14125,431,454 - 125,459,367 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013997382   ⟹   XP_013852836
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.14125,431,454 - 125,457,557 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021090250   ⟹   XP_020945909
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.14125,437,706 - 125,459,360 (-)NCBI
Sequence:
RefSeq Acc Id: XP_013852835   ⟸   XM_013997381
- Peptide Label: isoform X2
- UniProtKB: A0A8D1IB35 (UniProtKB/TrEMBL),   A0A287A407 (UniProtKB/TrEMBL),   A0A8D0RGX2 (UniProtKB/TrEMBL),   A0A8D0YGW2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013852832   ⟸   XM_013997378
- Peptide Label: isoform X1
- UniProtKB: A0A480XKK4 (UniProtKB/TrEMBL),   A0A4X1U6E9 (UniProtKB/TrEMBL),   A0A480ZDZ3 (UniProtKB/TrEMBL),   A0A481BSR3 (UniProtKB/TrEMBL),   A0A8D0RIV9 (UniProtKB/TrEMBL),   A0A8D1QDX9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_003125960   ⟸   XM_003125912
- Peptide Label: isoform X1
- UniProtKB: A0A480XKK4 (UniProtKB/TrEMBL),   A0A4X1U6E9 (UniProtKB/TrEMBL),   A0A480ZDZ3 (UniProtKB/TrEMBL),   A0A481BSR3 (UniProtKB/TrEMBL),   A0A8D0RIV9 (UniProtKB/TrEMBL),   A0A8D1QDX9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013852833   ⟸   XM_013997379
- Peptide Label: isoform X1
- UniProtKB: A0A480XKK4 (UniProtKB/TrEMBL),   A0A4X1U6E9 (UniProtKB/TrEMBL),   A0A480ZDZ3 (UniProtKB/TrEMBL),   A0A481BSR3 (UniProtKB/TrEMBL),   A0A8D0RIV9 (UniProtKB/TrEMBL),   A0A8D1QDX9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013852834   ⟸   XM_013997380
- Peptide Label: isoform X1
- UniProtKB: A0A480XKK4 (UniProtKB/TrEMBL),   A0A4X1U6E9 (UniProtKB/TrEMBL),   A0A480ZDZ3 (UniProtKB/TrEMBL),   A0A481BSR3 (UniProtKB/TrEMBL),   A0A8D0RIV9 (UniProtKB/TrEMBL),   A0A8D1QDX9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013852836   ⟸   XM_013997382
- Peptide Label: isoform X3
- UniProtKB: A0A4X1U6H3 (UniProtKB/TrEMBL),   I3LD81 (UniProtKB/TrEMBL),   A0A8D0UN38 (UniProtKB/TrEMBL),   A0A8D1C210 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020945909   ⟸   XM_021090250
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: ENSSSCP00000038701   ⟸   ENSSSCT00000039605
RefSeq Acc Id: ENSSSCP00000022010   ⟸   ENSSSCT00000025161
RefSeq Acc Id: ENSSSCP00000061636   ⟸   ENSSSCT00000083884
RefSeq Acc Id: ENSSSCP00000068885   ⟸   ENSSSCT00000090968
Protein Domains
Protein kinase


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000027251 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00015050718 UniProtKB/TrEMBL
  ENSSSCG00025029288 UniProtKB/TrEMBL
  ENSSSCG00030019202 UniProtKB/TrEMBL
  ENSSSCG00035005064 UniProtKB/TrEMBL
  ENSSSCG00040070309 UniProtKB/TrEMBL
  ENSSSCG00045025927 UniProtKB/TrEMBL
  ENSSSCG00050016151 UniProtKB/TrEMBL
  ENSSSCG00055011542 UniProtKB/TrEMBL
  ENSSSCG00060016861 UniProtKB/TrEMBL
  ENSSSCG00070014451 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000025161 ENTREZGENE
  ENSSSCT00000025161.4 UniProtKB/TrEMBL
  ENSSSCT00000039605 ENTREZGENE
  ENSSSCT00000039605.2 UniProtKB/TrEMBL
  ENSSSCT00000090968 ENTREZGENE
  ENSSSCT00000090968.2 UniProtKB/TrEMBL
  ENSSSCT00015067541.1 UniProtKB/TrEMBL
  ENSSSCT00015067673.1 UniProtKB/TrEMBL
  ENSSSCT00015067869.1 UniProtKB/TrEMBL
  ENSSSCT00025039852.1 UniProtKB/TrEMBL
  ENSSSCT00025040008.1 UniProtKB/TrEMBL
  ENSSSCT00025040168.1 UniProtKB/TrEMBL
  ENSSSCT00030026536.1 UniProtKB/TrEMBL
  ENSSSCT00035006361.1 UniProtKB/TrEMBL
  ENSSSCT00035006365.1 UniProtKB/TrEMBL
  ENSSSCT00035006375.1 UniProtKB/TrEMBL
  ENSSSCT00040096451.1 UniProtKB/TrEMBL
  ENSSSCT00040096565.1 UniProtKB/TrEMBL
  ENSSSCT00040096659.1 UniProtKB/TrEMBL
  ENSSSCT00045044161.1 UniProtKB/TrEMBL
  ENSSSCT00045044321.1 UniProtKB/TrEMBL
  ENSSSCT00045044425.1 UniProtKB/TrEMBL
  ENSSSCT00050021999.1 UniProtKB/TrEMBL
  ENSSSCT00055022607.1 UniProtKB/TrEMBL
  ENSSSCT00055022683.1 UniProtKB/TrEMBL
  ENSSSCT00055022726.1 UniProtKB/TrEMBL
  ENSSSCT00060022515.1 UniProtKB/TrEMBL
  ENSSSCT00070028408.1 UniProtKB/TrEMBL
  ENSSSCT00070028418.1 UniProtKB/TrEMBL
Gene3D-CATH Transferase(Phosphotransferase) domain 1 UniProtKB/TrEMBL
InterPro Kinase-like_dom_sf UniProtKB/TrEMBL
  Prot_kinase_dom UniProtKB/TrEMBL
  Protein_kinase_ATP_BS UniProtKB/TrEMBL
  Ser/Thr_kinase_AS UniProtKB/TrEMBL
NCBI Gene CDC7 ENTREZGENE
PANTHER CDC7 KINASE, ISOFORM A-RELATED UniProtKB/TrEMBL
  OVARIAN-SPECIFIC SERINE/THREONINE-PROTEIN KINASE LOK-RELATED UniProtKB/TrEMBL
Pfam Pkinase UniProtKB/TrEMBL
PROSITE PROTEIN_KINASE_ATP UniProtKB/TrEMBL
  PROTEIN_KINASE_DOM UniProtKB/TrEMBL
  PROTEIN_KINASE_ST UniProtKB/TrEMBL
SMART S_TKc UniProtKB/TrEMBL
Superfamily-SCOP SSF56112 UniProtKB/TrEMBL
UniProt A0A287A407 ENTREZGENE, UniProtKB/TrEMBL
  A0A480XKK4 ENTREZGENE, UniProtKB/TrEMBL
  A0A480ZDZ3 ENTREZGENE, UniProtKB/TrEMBL
  A0A481BSR3 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1U6E9 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1U6H3 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0RGX2 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0RIV9 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0UN38 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0YGW2 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1C210 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1IB35 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1QDX9 ENTREZGENE, UniProtKB/TrEMBL
  I3LD81 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:97922 ENTREZGENE