DSC3 (desmocollin 3) - Rat Genome Database

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Gene: DSC3 (desmocollin 3) Sus scrofa
Analyze
Symbol: DSC3
Name: desmocollin 3
RGD ID: 13975366
Description: ENCODES a protein that exhibits cadherin binding (inferred); calcium ion binding (inferred); gamma-catenin binding (inferred); INVOLVED IN in utero embryonic development (ortholog); protein stabilization (ortholog); ASSOCIATED WITH Breast Neoplasms (ortholog); genetic disease (ortholog); Hypotrichosis and Recurrent Skin Vesicles (ortholog); FOUND IN adherens junction (inferred); anchoring junction (inferred); catenin complex (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: desmocollin-3
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl6114,916,767 - 114,963,609 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.16114,916,759 - 114,963,688 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
DSC3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl6114,916,767 - 114,963,609 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.16114,916,759 - 114,963,688 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
DSC3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381830,989,365 - 31,042,742 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1830,989,365 - 31,042,815 (-)EnsemblGRCh38hg38GRCh38
GRCh371828,569,331 - 28,622,708 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361826,824,050 - 26,876,779 (-)NCBINCBI36Build 36hg18NCBI36
Build 341826,825,028 - 26,876,687NCBI
Celera1825,378,198 - 25,430,941 (-)NCBICelera
Cytogenetic Map18q12.1NCBI
HuRef1825,425,914 - 25,478,635 (-)NCBIHuRef
CHM1_11828,497,074 - 28,549,808 (-)NCBICHM1_1
T2T-CHM13v2.01831,179,590 - 31,233,008 (-)NCBIT2T-CHM13v2.0
Dsc3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391820,093,987 - 20,135,465 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1820,093,987 - 20,135,408 (-)EnsemblGRCm39 Ensembl
GRCm381819,960,930 - 20,002,410 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1819,960,930 - 20,002,351 (-)EnsemblGRCm38mm10GRCm38
MGSCv371820,119,431 - 20,160,598 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361820,106,382 - 20,145,107 (-)NCBIMGSCv36mm8
Celera1820,463,199 - 20,504,347 (-)NCBICelera
Cytogenetic Map18A2NCBI
cM Map1811.11NCBI
Dsc3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81811,654,833 - 11,688,871 (-)NCBIGRCr8
mRatBN7.21811,379,759 - 11,413,797 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1811,377,347 - 11,413,797 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1811,574,466 - 11,608,498 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01812,362,111 - 12,396,145 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01811,633,767 - 11,667,803 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01811,753,047 - 11,789,846 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1811,753,047 - 11,789,708 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01811,554,588 - 11,588,850 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41811,831,071 - 11,865,107 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11811,857,716 - 11,891,578 (-)NCBI
Celera1811,397,921 - 11,431,839 (-)NCBICelera
Cytogenetic Map18p12NCBI
Dsc3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540218,399,220 - 18,439,878 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540218,401,065 - 18,439,827 (-)NCBIChiLan1.0ChiLan1.0
DSC3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21748,394,427 - 48,448,377 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11834,087,022 - 34,140,970 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01824,220,429 - 24,273,547 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11827,818,830 - 27,871,498 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1827,817,639 - 27,871,602 (-)Ensemblpanpan1.1panPan2
DSC3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1758,412,769 - 58,457,593 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha757,849,240 - 57,898,797 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0758,397,433 - 58,444,156 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.1758,073,592 - 58,123,113 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0758,098,278 - 58,147,954 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0758,389,185 - 58,438,756 (+)NCBIUU_Cfam_GSD_1.0
Dsc3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494454,118,723 - 54,162,850 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366822,057,190 - 2,164,429 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366822,126,394 - 2,161,672 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
DSC3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11849,660,067 - 49,709,762 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1849,662,094 - 49,709,529 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605024,308,080 - 24,359,720 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Dsc3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247701,803,296 - 1,843,687 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247701,799,731 - 1,846,379 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in DSC3
893 total Variants

Expression


Sequence


RefSeq Acc Id: ENSSSCT00000022913   ⟹   ENSSSCP00000028130
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl6114,982,268 - 115,021,305 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000023517   ⟹   ENSSSCP00000023072
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl6114,916,767 - 115,021,148 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000029720   ⟹   ENSSSCP00000026712
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl6114,918,815 - 114,963,403 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000047176   ⟹   ENSSSCP00000052236
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl6114,982,617 - 115,021,287 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000048109   ⟹   ENSSSCP00000037691
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl6114,980,601 - 115,021,184 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000076047   ⟹   ENSSSCP00000066400
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl6114,916,767 - 114,963,609 (-)Ensembl
RefSeq Acc Id: XM_021096206   ⟹   XP_020951865
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.16114,916,759 - 114,963,688 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021096207   ⟹   XP_020951866
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.16114,916,759 - 114,963,671 (-)NCBI
Sequence:
RefSeq Acc Id: XP_020951865   ⟸   XM_021096206
- Peptide Label: isoform X1
- UniProtKB: A0A5G2QNX5 (UniProtKB/TrEMBL),   A0A8D0K354 (UniProtKB/TrEMBL),   A0A8D1AR54 (UniProtKB/TrEMBL),   A0A8D1EK83 (UniProtKB/TrEMBL),   A0A8D1PJY8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020951866   ⟸   XM_021096207
- Peptide Label: isoform X2
- UniProtKB: I3LRH7 (UniProtKB/TrEMBL),   A0A8D1AUS3 (UniProtKB/TrEMBL),   A0A8D1PRC7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000026712   ⟸   ENSSSCT00000029720
RefSeq Acc Id: ENSSSCP00000066400   ⟸   ENSSSCT00000076047
RefSeq Acc Id: ENSSSCP00000028130   ⟸   ENSSSCT00000022913
RefSeq Acc Id: ENSSSCP00000037691   ⟸   ENSSSCT00000048109
RefSeq Acc Id: ENSSSCP00000052236   ⟸   ENSSSCT00000047176
RefSeq Acc Id: ENSSSCP00000023072   ⟸   ENSSSCT00000023517
Protein Domains
Cadherin


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000024800 Ensembl, UniProtKB/TrEMBL
  ENSSSCG00000057415 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00005032782 UniProtKB/TrEMBL
  ENSSSCG00035062445 UniProtKB/TrEMBL
  ENSSSCG00040042614 UniProtKB/TrEMBL
  ENSSSCG00055004862 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000029720 ENTREZGENE
  ENSSSCT00000029720.4 UniProtKB/TrEMBL
  ENSSSCT00000047176.3 UniProtKB/TrEMBL
  ENSSSCT00000076047 ENTREZGENE
  ENSSSCT00000076047.1 UniProtKB/TrEMBL
  ENSSSCT00005052790.1 UniProtKB/TrEMBL
  ENSSSCT00035083910.1 UniProtKB/TrEMBL
  ENSSSCT00035083919.1 UniProtKB/TrEMBL
  ENSSSCT00040057009.1 UniProtKB/TrEMBL
  ENSSSCT00055009555.1 UniProtKB/TrEMBL
  ENSSSCT00055009566.1 UniProtKB/TrEMBL
Gene3D-CATH 4.10.900.10 UniProtKB/TrEMBL
  Cadherins UniProtKB/TrEMBL
InterPro Cadherin-like_dom UniProtKB/TrEMBL
  Cadherin-like_sf UniProtKB/TrEMBL
  Cadherin_CS UniProtKB/TrEMBL
  Cadherin_cytoplasmic-dom UniProtKB/TrEMBL
  Cadherin_pro_dom UniProtKB/TrEMBL
  Catenin_binding_dom_sf UniProtKB/TrEMBL
  Desmosomal_cadherin UniProtKB/TrEMBL
NCBI Gene DSC3 ENTREZGENE
PANTHER DESMOCOLLIN-2 UniProtKB/TrEMBL
  DESMOCOLLIN-3 UniProtKB/TrEMBL
  DESMOGLEIN FAMILY MEMBER UniProtKB/TrEMBL
Pfam Cadherin UniProtKB/TrEMBL
  Cadherin_C UniProtKB/TrEMBL
  Cadherin_pro UniProtKB/TrEMBL
PRINTS CADHERIN UniProtKB/TrEMBL
  DESMOCADHERN UniProtKB/TrEMBL
  DESMOCOLLIN UniProtKB/TrEMBL
PROSITE CADHERIN_1 UniProtKB/TrEMBL
  CADHERIN_2 UniProtKB/TrEMBL
  PROKAR_LIPOPROTEIN UniProtKB/TrEMBL
SMART Cadherin_pro UniProtKB/TrEMBL
  SM00112 UniProtKB/TrEMBL
Superfamily-SCOP SSF49313 UniProtKB/TrEMBL
UniProt A0A287B6Z6_PIG UniProtKB/TrEMBL
  A0A5G2QNX5 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0K354 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1AR54 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1AUS3 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1EK83 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1PJY8 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1PRC7 ENTREZGENE, UniProtKB/TrEMBL
  I3LRH7 ENTREZGENE, UniProtKB/TrEMBL