LOC100511430 (spermatid nuclear transition protein 4) - Rat Genome Database

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Gene: LOC100511430 (spermatid nuclear transition protein 4) Sus scrofa
Analyze
Symbol: LOC100511430
Name: spermatid nuclear transition protein 4
RGD ID: 13975340
Description: ENCODES a protein that exhibits DNA binding (inferred); INVOLVED IN cell differentiation (inferred); spermatogenesis (inferred); ASSOCIATED WITH autistic disorder (ortholog); syndromic X-linked intellectual disability Lubs type (ortholog); FOUND IN chromosome (inferred); nucleosome (inferred); nucleus (inferred)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Bonobo
Dog
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1X118,621,838 - 118,622,598 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2X135,926,999 - 135,927,805 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
chromosome  (IEA)
nucleosome  (IEA)
nucleus  (IEA)

Molecular Function

References

Genomics

Comparative Map Data
LOC100511430
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1X118,621,838 - 118,622,598 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2X135,926,999 - 135,927,805 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CXorf51B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X146,809,771 - 146,810,411 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblX146,809,771 - 146,810,411 (+)EnsemblGRCh38hg38GRCh38
GRCh37X145,891,289 - 145,891,929 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36X145,698,995 - 145,699,621 (+)NCBINCBI36Build 36hg18NCBI36
Cytogenetic MapXq27.3NCBI
CHM1_1X145,790,914 - 145,807,216 (-)NCBICHM1_1
T2T-CHM13v2.0X145,069,002 - 145,069,642 (+)NCBIT2T-CHM13v2.0
CXHXorf51B
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2X146,110,029 - 146,110,702 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1X146,113,632 - 146,114,303 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0X135,820,652 - 135,821,325 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
LOC119868241
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Dog10K_Boxer_TashaX101,215,541 - 101,216,393 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0X117,376,430 - 117,377,276 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.1X114,497,071 - 114,497,923 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0X116,704,119 - 116,704,965 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0X116,434,226 - 116,435,078 (-)NCBIUU_Cfam_GSD_1.0

Variants

.
Variants in LOC100511430
3 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium
Low 10 4 3 5 2 23 2 3 3
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: XM_003135438   ⟹   XP_003135486
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1X118,621,838 - 118,622,598 (-)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: XP_003135486   ⟸   XM_003135438
- UniProtKB: Q09821 (UniProtKB/Swiss-Prot),   A0A286ZSK5 (UniProtKB/TrEMBL),   A0A4X1SU83 (UniProtKB/TrEMBL),   A0A8D1CJZ9 (UniProtKB/TrEMBL)
- Sequence:


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000032608 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00005045604 UniProtKB/TrEMBL
  ENSSSCG00015070987 UniProtKB/TrEMBL
  ENSSSCG00025075468 UniProtKB/TrEMBL
  ENSSSCG00030005233 UniProtKB/TrEMBL
  ENSSSCG00035003646 UniProtKB/TrEMBL
  ENSSSCG00040012905 UniProtKB/TrEMBL
  ENSSSCG00045021457 UniProtKB/TrEMBL
  ENSSSCG00050074420 UniProtKB/TrEMBL
  ENSSSCG00055017839 UniProtKB/TrEMBL
  ENSSSCG00060004628 UniProtKB/TrEMBL
  ENSSSCG00065012914 UniProtKB/TrEMBL
  ENSSSCG00070003835 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000061671 ENTREZGENE
  ENSSSCT00000061671.3 UniProtKB/TrEMBL
  ENSSSCT00005073736.1 UniProtKB/TrEMBL
  ENSSSCT00015095177.1 UniProtKB/TrEMBL
  ENSSSCT00025104107.1 UniProtKB/TrEMBL
  ENSSSCT00030007141.1 UniProtKB/TrEMBL
  ENSSSCT00035004521.1 UniProtKB/TrEMBL
  ENSSSCT00040017116.1 UniProtKB/TrEMBL
  ENSSSCT00045036675.1 UniProtKB/TrEMBL
  ENSSSCT00050101875.1 UniProtKB/TrEMBL
  ENSSSCT00055034954.1 UniProtKB/TrEMBL
  ENSSSCT00060005737.1 UniProtKB/TrEMBL
  ENSSSCT00065017197.1 UniProtKB/TrEMBL
  ENSSSCT00070007175.1 UniProtKB/TrEMBL
InterPro Spermatid_TP UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report ssc:100511430 UniProtKB/TrEMBL
NCBI Gene LOC100511430 ENTREZGENE
PANTHER PROTEIN GAR2-LIKE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SPERMATID NUCLEAR TRANSITION PROTEIN 4 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A286ZSK5 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1SU83 ENTREZGENE
  A0A8D1CJZ9 ENTREZGENE, UniProtKB/TrEMBL
  Q09821 ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary A0A4X1SU83 UniProtKB/TrEMBL