CACYBP (calcyclin binding protein) - Rat Genome Database

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Gene: CACYBP (calcyclin binding protein) Sus scrofa
Analyze
Symbol: CACYBP
Name: calcyclin binding protein
RGD ID: 13975299
Description: ENCODES a protein that exhibits molecular adaptor activity (ortholog); INVOLVED IN cardiac muscle cell differentiation (ortholog); cellular response to calcium ion (ortholog); cellular response to leukemia inhibitory factor (ortholog); ASSOCIATED WITH 1q24 Deletion Syndrome (ortholog); antithrombin III deficiency (ortholog); gastrointestinal stromal tumor (ortholog); FOUND IN cell body (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: calcyclin-binding protein
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl9117,064,187 - 117,123,126 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.19117,062,303 - 117,077,442 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.29128,738,082 - 128,751,826 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:14681463   PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
CACYBP
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl9117,064,187 - 117,123,126 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.19117,062,303 - 117,077,442 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.29128,738,082 - 128,751,826 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CACYBP
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381174,999,435 - 175,012,027 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1174,999,163 - 175,012,027 (+)EnsemblGRCh38hg38GRCh38
GRCh371174,968,571 - 174,981,163 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361173,235,194 - 173,247,786 (+)NCBINCBI36Build 36hg18NCBI36
Build 341171,700,548 - 171,712,820NCBI
Celera1148,078,240 - 148,090,832 (+)NCBICelera
Cytogenetic Map1q25.1NCBI
HuRef1146,194,908 - 146,207,494 (+)NCBIHuRef
CHM1_11176,391,539 - 176,404,132 (+)NCBICHM1_1
T2T-CHM13v2.01174,353,190 - 174,365,783 (+)NCBIT2T-CHM13v2.0
Cacybp
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391160,029,171 - 160,040,391 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1160,029,937 - 160,040,445 (-)EnsemblGRCm39 Ensembl
GRCm381160,202,367 - 160,212,892 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1160,202,367 - 160,212,875 (-)EnsemblGRCm38mm10GRCm38
MGSCv371162,133,052 - 162,142,908 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361162,039,598 - 162,049,454 (-)NCBIMGSCv36mm8
Celera1162,614,677 - 162,624,538 (-)NCBICelera
Cytogenetic Map1H2.1NCBI
cM Map169.61NCBI
Cacybp
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81374,970,917 - 74,981,298 (-)NCBIGRCr8
mRatBN7.21372,437,485 - 72,447,810 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1372,437,490 - 72,450,177 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1375,022,046 - 75,032,407 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01376,314,548 - 76,324,870 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01373,574,097 - 73,584,419 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01377,948,771 - 77,959,089 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1377,948,771 - 77,959,110 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01382,855,945 - 82,866,235 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41375,623,161 - 75,633,644 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11375,637,349 - 75,647,832 (-)NCBI
Celera1372,243,269 - 72,253,676 (-)NCBICelera
Cytogenetic Map13q22NCBI
Cacybp
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495540614,823,509 - 14,840,127 (+)NCBIChiLan1.0ChiLan1.0
CACYBP
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2174,721,125 - 74,732,212 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1174,394,759 - 74,405,832 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01150,511,021 - 150,522,369 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11154,209,195 - 154,220,583 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1154,210,001 - 154,220,583 (+)Ensemblpanpan1.1panPan2
CACYBP
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1724,372,599 - 24,384,084 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl724,372,596 - 24,383,926 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha723,898,801 - 23,910,323 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0724,120,354 - 24,131,864 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl724,120,357 - 24,131,667 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1724,033,026 - 24,044,547 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0724,124,108 - 24,135,611 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0724,269,151 - 24,280,676 (-)NCBIUU_Cfam_GSD_1.0
Cacybp
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934495,351,995 - 95,356,739 (-)NCBIHiC_Itri_2
SpeTri2.0NW_00493648113,198,744 - 13,203,518 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CACYBP
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12554,246,331 - 54,258,273 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2554,247,057 - 54,257,660 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605555,820,181 - 55,833,649 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cacybp
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247716,982,255 - 6,993,867 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247716,982,248 - 6,993,661 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in CACYBP
418 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 10 4 3 5 2 23 2 3 3
Low
Below cutoff

Sequence


RefSeq Acc Id: ENSSSCT00000016891   ⟹   ENSSSCP00000016440
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl9117,064,187 - 117,123,126 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000081632   ⟹   ENSSSCP00000063721
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl9117,064,207 - 117,071,479 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000086989   ⟹   ENSSSCP00000068974
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl9117,067,953 - 117,123,126 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000087443   ⟹   ENSSSCP00000061030
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl9117,063,680 - 117,077,442 (+)Ensembl
RefSeq Acc Id: XM_003130321   ⟹   XP_003130369
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.19117,063,995 - 117,077,442 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013989619   ⟹   XP_013845073
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.19117,064,161 - 117,077,442 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013989620   ⟹   XP_013845074
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.19117,062,303 - 117,077,442 (+)NCBI
Sequence:
RefSeq Acc Id: XP_013845074   ⟸   XM_013989620
- Peptide Label: isoform X2
- UniProtKB: A0A4X1U960 (UniProtKB/TrEMBL),   A0A5G2R457 (UniProtKB/TrEMBL),   A0A8D0YXS0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_003130369   ⟸   XM_003130321
- Peptide Label: isoform X1
- UniProtKB: F1S710 (UniProtKB/TrEMBL),   A0A4X1UEL0 (UniProtKB/TrEMBL),   A0A8D0QA79 (UniProtKB/TrEMBL),   A0A8D1YT08 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013845073   ⟸   XM_013989619
- Peptide Label: isoform X2
- UniProtKB: A0A4X1U960 (UniProtKB/TrEMBL),   A0A5G2R457 (UniProtKB/TrEMBL),   A0A8D0YXS0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000016440   ⟸   ENSSSCT00000016891
RefSeq Acc Id: ENSSSCP00000063721   ⟸   ENSSSCT00000081632
RefSeq Acc Id: ENSSSCP00000061030   ⟸   ENSSSCT00000087443
RefSeq Acc Id: ENSSSCP00000068974   ⟸   ENSSSCT00000086989
Protein Domains
CS   SGS


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000015504 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00005032850 UniProtKB/TrEMBL
  ENSSSCG00015079909 UniProtKB/TrEMBL
  ENSSSCG00025034293 UniProtKB/TrEMBL
  ENSSSCG00030069818 UniProtKB/TrEMBL
  ENSSSCG00035015407 UniProtKB/TrEMBL
  ENSSSCG00040005443 UniProtKB/TrEMBL
  ENSSSCG00045002450 UniProtKB/TrEMBL
  ENSSSCG00050011384 UniProtKB/TrEMBL
  ENSSSCG00055012628 UniProtKB/TrEMBL
  ENSSSCG00060012647 UniProtKB/TrEMBL
  ENSSSCG00065044331 UniProtKB/TrEMBL
  ENSSSCG00070016086 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000016891 ENTREZGENE
  ENSSSCT00000016891.4 UniProtKB/TrEMBL
  ENSSSCT00000086989.1 UniProtKB/TrEMBL
  ENSSSCT00005052589.1 UniProtKB/TrEMBL
  ENSSSCT00015108577.1 UniProtKB/TrEMBL
  ENSSSCT00015108611.1 UniProtKB/TrEMBL
  ENSSSCT00025046776.1 UniProtKB/TrEMBL
  ENSSSCT00025046859.1 UniProtKB/TrEMBL
  ENSSSCT00025046956.1 UniProtKB/TrEMBL
  ENSSSCT00030097690.1 UniProtKB/TrEMBL
  ENSSSCT00030097747.1 UniProtKB/TrEMBL
  ENSSSCT00035019638.1 UniProtKB/TrEMBL
  ENSSSCT00035019641.1 UniProtKB/TrEMBL
  ENSSSCT00035019642.1 UniProtKB/TrEMBL
  ENSSSCT00040007203.1 UniProtKB/TrEMBL
  ENSSSCT00040007231.1 UniProtKB/TrEMBL
  ENSSSCT00045003836.1 UniProtKB/TrEMBL
  ENSSSCT00045003855.1 UniProtKB/TrEMBL
  ENSSSCT00045003880.1 UniProtKB/TrEMBL
  ENSSSCT00050015322.1 UniProtKB/TrEMBL
  ENSSSCT00050015335.1 UniProtKB/TrEMBL
  ENSSSCT00050015360.1 UniProtKB/TrEMBL
  ENSSSCT00055024904.1 UniProtKB/TrEMBL
  ENSSSCT00055024959.1 UniProtKB/TrEMBL
  ENSSSCT00055025014.1 UniProtKB/TrEMBL
  ENSSSCT00060016616.1 UniProtKB/TrEMBL
  ENSSSCT00060016630.1 UniProtKB/TrEMBL
  ENSSSCT00065060637.1 UniProtKB/TrEMBL
  ENSSSCT00065060642.1 UniProtKB/TrEMBL
  ENSSSCT00065060653.1 UniProtKB/TrEMBL
  ENSSSCT00070031594.1 UniProtKB/TrEMBL
  ENSSSCT00070031601.1 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.790 UniProtKB/TrEMBL
  UVR domain UniProtKB/TrEMBL
InterPro CacyBP_N UniProtKB/TrEMBL
  CS_CacyBP UniProtKB/TrEMBL
  CS_dom UniProtKB/TrEMBL
  HSP20-like_chaperone UniProtKB/TrEMBL
  SGS_dom UniProtKB/TrEMBL
  Siah-Interact_N UniProtKB/TrEMBL
KEGG Report ssc:100519266 UniProtKB/TrEMBL
NCBI Gene CACYBP ENTREZGENE
PANTHER CALCYCLIN-BINDING PROTEIN UniProtKB/TrEMBL
  CALICYLIN BINDING PROTEIN UniProtKB/TrEMBL
Pfam PF04969 UniProtKB/TrEMBL
  SGS UniProtKB/TrEMBL
  Siah-Interact_N UniProtKB/TrEMBL
PROSITE PS51203 UniProtKB/TrEMBL
  SGS UniProtKB/TrEMBL
Superfamily-SCOP SSF140106 UniProtKB/TrEMBL
  SSF49764 UniProtKB/TrEMBL
UniProt A0A4X1U960 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1UEL0 ENTREZGENE
  A0A5G2R457 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0QA79 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0YXS0 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1YT08 ENTREZGENE, UniProtKB/TrEMBL
  F1S710 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary A0A4X1UEL0 UniProtKB/TrEMBL
VGNC ID VGNC:86133 ENTREZGENE