ZMYM5 (zinc finger MYM-type containing 5) - Rat Genome Database

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Gene: ZMYM5 (zinc finger MYM-type containing 5) Sus scrofa
Analyze
Symbol: ZMYM5
Name: zinc finger MYM-type containing 5
RGD ID: 13974225
Description: ENCODES a protein that exhibits zinc ion binding (inferred); INVOLVED IN negative regulation of transcription by RNA polymerase II (inferred); ASSOCIATED WITH genetic disease (ortholog); polycystic ovary syndrome (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: zinc finger MYM-type protein 5
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl11576,723 - 630,557 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.111576,721 - 630,607 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21186,976,055 - 87,007,263 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Molecular Function

References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
ZMYM5
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl11576,723 - 630,557 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.111576,721 - 630,607 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21186,976,055 - 87,007,263 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ZMYM5
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381319,823,482 - 19,863,649 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1319,823,482 - 19,863,649 (-)EnsemblGRCh38hg38GRCh38
GRCh371320,397,622 - 20,437,789 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361319,309,593 - 19,335,773 (-)NCBINCBI36Build 36hg18NCBI36
Build 341319,309,604 - 19,335,664NCBI
Celera131,459,413 - 1,499,564 (-)NCBICelera
Cytogenetic Map13q12.11NCBI
HuRef131,202,818 - 1,243,159 (-)NCBIHuRef
CHM1_11320,366,146 - 20,406,297 (-)NCBICHM1_1
T2T-CHM13v2.01319,019,698 - 19,059,861 (-)NCBIT2T-CHM13v2.0
Zmym5
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391457,028,042 - 57,049,213 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1457,028,042 - 57,049,173 (-)EnsemblGRCm39 Ensembl
GRCm381456,790,585 - 56,815,051 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1456,790,585 - 56,811,716 (-)EnsemblGRCm38mm10GRCm38
MGSCv371457,409,425 - 57,430,553 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361455,747,431 - 55,765,807 (-)NCBIMGSCv36mm8
Celera1454,588,485 - 54,608,539 (-)NCBICelera
Cytogenetic Map14C3NCBI
cM Map1428.45NCBI
Zmym5
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81535,036,226 - 35,056,842 (-)NCBIGRCr8
mRatBN7.21530,920,479 - 30,941,249 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1530,923,241 - 30,941,240 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.01537,039,481 - 37,061,958 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1537,042,396 - 37,056,892 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01540,891,187 - 40,912,282 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41535,792,204 - 35,810,436 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11535,798,619 - 35,828,186 (-)NCBI
Celera1530,633,534 - 30,654,333 (-)NCBICelera
Cytogenetic Map15p12NCBI
Zmym5
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955497673,697 - 697,772 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955497664,382 - 697,772 (-)NCBIChiLan1.0ChiLan1.0
ZMYM5
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21419,419,899 - 19,490,575 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11310,532,352 - 10,603,183 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0131,147,873 - 1,187,375 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11319,462,920 - 19,501,541 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1319,462,306 - 19,501,541 (-)Ensemblpanpan1.1panPan2
ZMYM5
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12518,218,630 - 18,296,232 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2518,219,956 - 18,260,315 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2518,248,828 - 18,325,768 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02518,356,479 - 18,434,306 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2518,358,456 - 18,399,417 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12518,229,863 - 18,265,324 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02518,234,407 - 18,312,258 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02518,291,603 - 18,368,730 (+)NCBIUU_Cfam_GSD_1.0
Zmym5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404945120,279,812 - 120,316,253 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367201,829,183 - 1,863,713 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049367201,826,715 - 1,863,710 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ZMYM5
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.131,091,376 - 1,133,664 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl31,102,694 - 1,132,641 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605743,436,843 - 43,477,237 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Zmym5
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462477617,841,895 - 17,874,261 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in ZMYM5
1427 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 1 1 1
Low 9 4 3 5 2 22 2 2 3
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSSSCT00000010489   ⟹   ENSSSCP00000010217
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl11576,723 - 624,041 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000049987   ⟹   ENSSSCP00000054168
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl11576,724 - 630,557 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000063264   ⟹   ENSSSCP00000052127
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl11576,723 - 616,853 (-)Ensembl
RefSeq Acc Id: XM_021065423   ⟹   XP_020921082
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.111576,721 - 630,607 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021065424   ⟹   XP_020921083
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.111577,164 - 616,835 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021065425   ⟹   XP_020921084
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.111576,721 - 616,966 (-)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: XP_020921082   ⟸   XM_021065423
- Peptide Label: isoform X1
- UniProtKB: A0A287BDH0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020921084   ⟸   XM_021065425
- Peptide Label: isoform X3
- UniProtKB: A0A8D1EUE6 (UniProtKB/TrEMBL),   F1RN29 (UniProtKB/TrEMBL),   A0A8D0TYL6 (UniProtKB/TrEMBL),   A0A8D2BI03 (UniProtKB/TrEMBL),   A0A8D0J506 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020921083   ⟸   XM_021065424
- Peptide Label: isoform X2
- UniProtKB: A0A480QQT3 (UniProtKB/TrEMBL),   A0A8D1EYJ6 (UniProtKB/TrEMBL),   A0A8D1PML3 (UniProtKB/TrEMBL),   A0A8D1V7Q3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000010217   ⟸   ENSSSCT00000010489
RefSeq Acc Id: ENSSSCP00000054168   ⟸   ENSSSCT00000049987
RefSeq Acc Id: ENSSSCP00000052127   ⟸   ENSSSCT00000063264
Protein Domains
TRASH


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000009568 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00005019174 UniProtKB/TrEMBL
  ENSSSCG00015022959 UniProtKB/TrEMBL
  ENSSSCG00030037796 UniProtKB/TrEMBL
  ENSSSCG00035021365 UniProtKB/TrEMBL
  ENSSSCG00040049600 UniProtKB/TrEMBL
  ENSSSCG00045031496 UniProtKB/TrEMBL
  ENSSSCG00050074477 UniProtKB/TrEMBL
  ENSSSCG00055003349 UniProtKB/TrEMBL
  ENSSSCG00060035613 UniProtKB/TrEMBL
  ENSSSCG00065007935 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000010489 ENTREZGENE
  ENSSSCT00000010489.5 UniProtKB/TrEMBL
  ENSSSCT00000049987 ENTREZGENE
  ENSSSCT00000049987.3 UniProtKB/TrEMBL
  ENSSSCT00000063264 ENTREZGENE
  ENSSSCT00000063264.3 UniProtKB/TrEMBL
  ENSSSCT00005030190.1 UniProtKB/TrEMBL
  ENSSSCT00005030211.1 UniProtKB/TrEMBL
  ENSSSCT00015030399.1 UniProtKB/TrEMBL
  ENSSSCT00030052583.1 UniProtKB/TrEMBL
  ENSSSCT00030052603.1 UniProtKB/TrEMBL
  ENSSSCT00035027847.1 UniProtKB/TrEMBL
  ENSSSCT00035027853.1 UniProtKB/TrEMBL
  ENSSSCT00040066818.1 UniProtKB/TrEMBL
  ENSSSCT00040066899.1 UniProtKB/TrEMBL
  ENSSSCT00045053675.1 UniProtKB/TrEMBL
  ENSSSCT00045053767.1 UniProtKB/TrEMBL
  ENSSSCT00050101961.1 UniProtKB/TrEMBL
  ENSSSCT00050101962.1 UniProtKB/TrEMBL
  ENSSSCT00055006538.1 UniProtKB/TrEMBL
  ENSSSCT00060048282.1 UniProtKB/TrEMBL
  ENSSSCT00060048284.1 UniProtKB/TrEMBL
  ENSSSCT00065010641.1 UniProtKB/TrEMBL
  ENSSSCT00065010648.1 UniProtKB/TrEMBL
InterPro TRASH_dom UniProtKB/TrEMBL
  Znf_MYM UniProtKB/TrEMBL
NCBI Gene ZMYM5 ENTREZGENE
PANTHER ZINC FINGER MYM-TYPE PROTEIN UniProtKB/TrEMBL
  ZINC FINGER MYM-TYPE PROTEIN 5 UniProtKB/TrEMBL
Pfam zf-FCS UniProtKB/TrEMBL
SMART TRASH UniProtKB/TrEMBL
Superfamily-SCOP Glucocorticoid receptor-like (DNA-binding domain) UniProtKB/TrEMBL
UniProt A0A287BDH0 ENTREZGENE, UniProtKB/TrEMBL
  A0A480QQT3 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0J506 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0TYL6 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0WQ44_PIG UniProtKB/TrEMBL
  A0A8D0Z6L7_PIG UniProtKB/TrEMBL
  A0A8D1EUE6 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1EYJ6 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1ITZ7_PIG UniProtKB/TrEMBL
  A0A8D1NRK9_PIG UniProtKB/TrEMBL
  A0A8D1PML3 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1V7Q3 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D2BI03 ENTREZGENE, UniProtKB/TrEMBL
  F1RN29 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:95184 ENTREZGENE