FIGLA (folliculogenesis specific bHLH transcription factor) - Rat Genome Database

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Gene: FIGLA (folliculogenesis specific bHLH transcription factor) Sus scrofa
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Symbol: FIGLA
Name: folliculogenesis specific bHLH transcription factor (Ensembl:folliculosis specific bHLH transcription factor)
RGD ID: 13972172
Description: ENCODES a protein that exhibits DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); E-box binding (ortholog); RNA polymerase II cis-regulatory region sequence-specific DNA binding (ortholog); INVOLVED IN positive regulation of transcription by RNA polymerase II (ortholog); ASSOCIATED WITH dystonia (ortholog); genetic disease (ortholog); hereditary breast ovarian cancer syndrome (ortholog); FOUND IN transcription regulator complex (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: factor in the germline alpha; FIG1A; folliculogenesis specific basic helix-loop-helix; signal transduction protein
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl371,709,681 - 71,723,699 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1371,709,580 - 71,723,760 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2375,279,760 - 75,293,830 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
FIGLA
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl371,709,681 - 71,723,699 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1371,709,580 - 71,723,760 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2375,279,760 - 75,293,830 (-)NCBISscrofa10.2Sscrofa10.2susScr3
FIGLA
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38270,777,310 - 70,790,643 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl270,777,310 - 70,790,643 (-)EnsemblGRCh38hg38GRCh38
GRCh37271,004,442 - 71,017,775 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36270,857,950 - 70,871,283 (-)NCBINCBI36Build 36hg18NCBI36
Celera270,855,120 - 70,868,451 (-)NCBICelera
Cytogenetic Map2p13.3NCBI
HuRef270,741,238 - 70,754,571 (-)NCBIHuRef
CHM1_1270,933,774 - 70,947,094 (-)NCBICHM1_1
T2T-CHM13v2.0270,788,361 - 70,801,694 (-)NCBIT2T-CHM13v2.0
Figla
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39685,993,476 - 85,997,978 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl685,993,153 - 85,997,978 (+)EnsemblGRCm39 Ensembl
GRCm38686,016,494 - 86,020,996 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl686,016,171 - 86,020,996 (+)EnsemblGRCm38mm10GRCm38
MGSCv37685,967,185 - 85,970,990 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36685,982,825 - 85,986,630 (+)NCBIMGSCv36mm8
Celera687,951,510 - 87,955,321 (+)NCBICelera
Cytogenetic Map6C3NCBI
cM Map637.55NCBI
Figla
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84119,989,983 - 119,994,217 (+)NCBIGRCr8
mRatBN7.24118,432,517 - 118,436,846 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4118,432,765 - 118,436,690 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.04117,679,256 - 117,683,618 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4117,679,342 - 117,683,411 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04182,253,804 - 182,257,822 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44120,156,783 - 120,160,708 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera4107,405,749 - 107,409,693 (+)NCBICelera
Cytogenetic Map4q34NCBI
Figla
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495542414,393,566 - 14,402,971 (+)NCBIChiLan1.0ChiLan1.0
FIGLA
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21255,598,863 - 55,612,500 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12A55,602,807 - 55,616,444 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02A70,840,305 - 70,853,542 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12A71,954,067 - 71,967,290 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A71,954,124 - 71,967,339 (-)Ensemblpanpan1.1panPan2
FIGLA
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11069,148,938 - 69,170,371 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1069,157,741 - 69,163,028 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1069,036,514 - 69,050,392 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01070,171,481 - 70,185,264 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.11069,890,037 - 69,903,826 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01070,151,451 - 70,165,203 (-)NCBIUNSW_CanFamBas_1.0
Figla
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629213,577,977 - 13,591,591 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493649114,988,269 - 14,993,315 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493649114,979,097 - 14,993,315 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FIGLA
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11436,320,167 - 36,334,099 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1436,321,125 - 36,334,042 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604575,686,883 - 75,699,917 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Figla
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247622,599,627 - 2,612,921 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in FIGLA
335 total Variants

Expression


Sequence


RefSeq Acc Id: ENSSSCT00000009112   ⟹   ENSSSCP00000008883
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl371,709,681 - 71,715,989 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000089976   ⟹   ENSSSCP00000067204
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl371,709,681 - 71,723,699 (+)Ensembl
RefSeq Acc Id: XM_005662486   ⟹   XP_005662543
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1371,709,582 - 71,723,760 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021088420   ⟹   XP_020944079
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1371,709,580 - 71,723,743 (+)NCBI
Sequence:
RefSeq Acc Id: XP_020944079   ⟸   XM_021088420
- Peptide Label: isoform X1
- UniProtKB: D1MBJ5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005662543   ⟸   XM_005662486
- Peptide Label: isoform X2
- UniProtKB: A0A4X1W3R3 (UniProtKB/TrEMBL),   A0A5G2QR33 (UniProtKB/TrEMBL),   A0A8D0P4V9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000008883   ⟸   ENSSSCT00000009112
RefSeq Acc Id: ENSSSCP00000067204   ⟸   ENSSSCT00000089976
Protein Domains
bHLH


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000008321 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00015047808 UniProtKB/TrEMBL
  ENSSSCG00025051251 UniProtKB/TrEMBL
  ENSSSCG00030036238 UniProtKB/TrEMBL
  ENSSSCG00035023687 UniProtKB/TrEMBL
  ENSSSCG00040070707 UniProtKB/TrEMBL
  ENSSSCG00045000673 UniProtKB/TrEMBL
  ENSSSCG00050029632 UniProtKB/TrEMBL
  ENSSSCG00055004392 UniProtKB/TrEMBL
  ENSSSCG00060046488 UniProtKB/TrEMBL
  ENSSSCG00065035574 UniProtKB/TrEMBL
  ENSSSCG00070029743 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000009112.4 UniProtKB/TrEMBL
  ENSSSCT00000089976 ENTREZGENE
  ENSSSCT00000089976.1 UniProtKB/TrEMBL
  ENSSSCT00015063753.1 UniProtKB/TrEMBL
  ENSSSCT00015063876.1 UniProtKB/TrEMBL
  ENSSSCT00025070009.1 UniProtKB/TrEMBL
  ENSSSCT00025070063.1 UniProtKB/TrEMBL
  ENSSSCT00030050363.1 UniProtKB/TrEMBL
  ENSSSCT00030050375.1 UniProtKB/TrEMBL
  ENSSSCT00035031074.1 UniProtKB/TrEMBL
  ENSSSCT00035031078.1 UniProtKB/TrEMBL
  ENSSSCT00040097144.1 UniProtKB/TrEMBL
  ENSSSCT00045000947.1 UniProtKB/TrEMBL
  ENSSSCT00045000953.1 UniProtKB/TrEMBL
  ENSSSCT00050039875.1 UniProtKB/TrEMBL
  ENSSSCT00055008666.1 UniProtKB/TrEMBL
  ENSSSCT00055008669.1 UniProtKB/TrEMBL
  ENSSSCT00060063098.1 UniProtKB/TrEMBL
  ENSSSCT00060063104.1 UniProtKB/TrEMBL
  ENSSSCT00065048456.1 UniProtKB/TrEMBL
  ENSSSCT00065048463.1 UniProtKB/TrEMBL
  ENSSSCT00070059787.1 UniProtKB/TrEMBL
  ENSSSCT00070059791.1 UniProtKB/TrEMBL
Gene3D-CATH 4.10.280.10 UniProtKB/TrEMBL
InterPro bHLH_dom UniProtKB/TrEMBL
  HLH_DNA-bd_sf UniProtKB/TrEMBL
NCBI Gene FIGLA ENTREZGENE
PANTHER BASIC HELIX-LOOP-HELIX TRANSCRIPTION FACTOR, TWIST UniProtKB/TrEMBL
  FACTOR IN THE GERMLINE ALPHA UniProtKB/TrEMBL
Pfam HLH UniProtKB/TrEMBL
PROSITE BHLH UniProtKB/TrEMBL
SMART HLH UniProtKB/TrEMBL
Superfamily-SCOP SSF47459 UniProtKB/TrEMBL
UniProt A0A4X1W3R3 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1W9N0_PIG UniProtKB/TrEMBL
  A0A5G2QR33 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0P4V9 ENTREZGENE, UniProtKB/TrEMBL
  D1MBJ5 ENTREZGENE, UniProtKB/TrEMBL
  D3K5M1_PIG UniProtKB/TrEMBL
UniProt Secondary F1SLD9 UniProtKB/TrEMBL
VGNC ID VGNC:88137 ENTREZGENE