MFSD2A (major facilitator superfamily domain containing 2A) - Rat Genome Database

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Gene: MFSD2A (major facilitator superfamily domain containing 2A) Sus scrofa
Analyze
Symbol: MFSD2A
Name: major facilitator superfamily domain containing 2A
RGD ID: 13970893
Description: ENCODES a protein that exhibits fatty acid transmembrane transporter activity (ortholog); long-chain fatty acid transporter activity (ortholog); symporter activity (ortholog); INVOLVED IN brain development (ortholog); cellular response to starvation (ortholog); cognition (ortholog); ASSOCIATED WITH Charcot-Marie-Tooth disease dominant intermediate C (ortholog); cryptorchidism (ortholog); hepatocellular carcinoma (ortholog); FOUND IN plasma membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: sodium-dependent lysophosphatidylcholine symporter 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl695,738,973 - 95,814,953 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1695,738,961 - 95,753,245 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2688,931,112 - 88,945,386 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

References
Additional References at PubMed
PMID:14681463  


Genomics

Comparative Map Data
MFSD2A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl695,738,973 - 95,814,953 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1695,738,961 - 95,753,245 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2688,931,112 - 88,945,386 (+)NCBISscrofa10.2Sscrofa10.2susScr3
MFSD2A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl139,955,112 - 39,969,968 (+)EnsemblGRCh38hg38GRCh38
GRCh38139,955,145 - 39,969,956 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh37140,420,817 - 40,435,628 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36140,193,397 - 40,208,215 (+)NCBINCBI36hg18NCBI36
Celera138,702,422 - 38,717,260 (+)NCBI
Cytogenetic Map1p34.2NCBI
HuRef138,539,329 - 38,554,171 (+)NCBIHuRef
CHM1_1140,536,427 - 40,551,282 (+)NCBICHM1_1
Mfsd2a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394122,840,643 - 122,855,844 (-)NCBIGRCm39mm39
GRCm39 Ensembl4122,840,643 - 122,854,981 (-)Ensembl
GRCm384122,946,850 - 122,961,194 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4122,946,850 - 122,961,188 (-)EnsemblGRCm38mm10GRCm38
MGSCv374122,624,093 - 122,638,431 (-)NCBIGRCm37mm9NCBIm37
MGSCv364122,449,153 - 122,463,473 (-)NCBImm8
Celera4121,276,713 - 121,291,009 (-)NCBICelera
Cytogenetic Map4D2.2NCBI
Mfsd2a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.25135,225,801 - 135,240,744 (-)NCBI
Rnor_6.0 Ensembl5140,642,885 - 140,657,745 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.05140,642,865 - 140,657,759 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.05144,433,445 - 144,448,324 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45142,260,560 - 142,275,435 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.15142,265,780 - 142,280,604 (-)NCBI
Celera5133,764,543 - 133,779,074 (-)NCBICelera
Cytogenetic Map5q36NCBI
Mfsd2a
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545217,430,219 - 17,443,830 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495545217,430,850 - 17,443,830 (+)NCBIChiLan1.0ChiLan1.0
MFSD2A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1140,569,706 - 40,584,438 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl140,569,706 - 40,584,438 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0139,244,438 - 39,259,156 (+)NCBIMhudiblu_PPA_v0panPan3
MFSD2A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1152,966,433 - 2,979,030 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl152,966,461 - 2,978,968 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha153,223,537 - 3,236,132 (-)NCBI
ROS_Cfam_1.0153,053,922 - 3,066,514 (-)NCBI
UMICH_Zoey_3.1152,960,820 - 2,973,412 (-)NCBI
UNSW_CanFamBas_1.0153,020,725 - 3,033,317 (-)NCBI
UU_Cfam_GSD_1.0153,037,135 - 3,049,729 (-)NCBI
Mfsd2a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505855,966,002 - 55,978,559 (+)NCBI
SpeTri2.0NW_00493647421,790,807 - 21,803,336 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MFSD2A
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12092,926,217 - 92,941,191 (-)NCBI
ChlSab1.1 Ensembl2092,926,067 - 92,941,159 (-)Ensembl
Vero_WHO_p1.0NW_02366603323,896,232 - 23,911,104 (+)NCBI
Mfsd2a
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462476422,422,520 - 22,435,332 (+)NCBI


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system endocrine system hemolymphoid system nervous system renal system reproductive system respiratory system
High
Medium 1
Low 7 1 20 2 1
Below cutoff 3 3 1 1 1

Sequence


Reference Sequences
RefSeq Acc Id: ENSSSCT00000004065   ⟹   ENSSSCP00000003973
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl695,738,973 - 95,814,953 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000076190   ⟹   ENSSSCP00000067635
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl695,738,973 - 95,814,953 (+)Ensembl
RefSeq Acc Id: XM_003127828   ⟹   XP_003127876
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1695,738,964 - 95,753,245 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005656087   ⟹   XP_005656144
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1695,738,961 - 95,753,245 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_003127876 (Get FASTA)   NCBI Sequence Viewer  
  XP_005656144 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_005656144   ⟸   XM_005656087
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_003127876   ⟸   XM_003127828
- Peptide Label: isoform X1
- UniProtKB: F1SMC3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000067635   ⟸   ENSSSCT00000076190
RefSeq Acc Id: ENSSSCP00000003973   ⟸   ENSSSCT00000004065


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000003669 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSSSCP00000003973 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCP00000067635 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000004065 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCT00000076190 UniProtKB/TrEMBL
InterPro MFS_2 UniProtKB/TrEMBL
  MFS_trans_sf UniProtKB/TrEMBL
KEGG Report ssc:100518612 UniProtKB/TrEMBL
NCBI Gene MFSD2A ENTREZGENE
PANTHER PTHR11328 UniProtKB/TrEMBL
Superfamily-SCOP SSF103473 UniProtKB/TrEMBL
UniProt A0A5G2QRU8_PIG UniProtKB/TrEMBL
  F1SMC3 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:90188 ENTREZGENE