FER1L4 (fer-1 like family member 4) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: FER1L4 (fer-1 like family member 4) Sus scrofa
Analyze
Symbol: FER1L4
Name: fer-1 like family member 4
RGD ID: 13970260
Description: ENCODES a protein that exhibits metal ion binding (inferred); INVOLVED IN plasma membrane organization (inferred); ASSOCIATED WITH COVID-19 (ortholog); FOUND IN membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: fer-1-like 4 (C. elegans), pseudogene; fer-1-like 4, pseudogene; fer-1-like protein 4
RGD Orthologs
Human
Mouse
Rat
Dog
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.11738,900,118 - 38,945,936 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21744,021,603 - 44,027,795 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View
COVID-19  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
membrane  (IEA)

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
FER1L4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.11738,900,118 - 38,945,936 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21744,021,603 - 44,027,795 (-)NCBISscrofa10.2Sscrofa10.2susScr3
FER1L4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382035,558,737 - 35,607,562 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2035,558,866 - 35,607,494 (-)EnsemblGRCh38hg38GRCh38
GRCh372034,146,507 - 34,195,484 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362033,609,921 - 33,651,008 (-)NCBINCBI36Build 36hg18NCBI36
Celera2030,894,820 - 30,943,779 (-)NCBICelera
Cytogenetic Map20q11.22NCBI
HuRef2030,924,013 - 30,973,281 (-)NCBIHuRef
CHM1_12034,047,835 - 34,097,104 (-)NCBICHM1_1
T2T-CHM13v2.02037,279,572 - 37,328,533 (-)NCBIT2T-CHM13v2.0
Fer1l4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392155,861,059 - 155,894,939 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2155,861,059 - 155,894,867 (-)EnsemblGRCm39 Ensembl
GRCm382156,019,139 - 156,053,019 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2156,019,139 - 156,052,947 (-)EnsemblGRCm38mm10GRCm38
MGSCv372155,844,876 - 155,878,683 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362155,710,581 - 155,744,081 (-)NCBIMGSCv36mm8
Celera2161,953,004 - 161,986,811 (-)NCBICelera
Cytogenetic Map2H1NCBI
cM Map277.32NCBI
Fer1l4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83164,996,183 - 165,031,719 (-)NCBIGRCr8
mRatBN7.23144,536,099 - 144,571,634 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3144,536,099 - 144,571,634 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx3148,401,697 - 148,437,422 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03157,018,973 - 157,054,698 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03154,758,499 - 154,794,224 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.03151,564,604 - 151,600,140 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3151,564,604 - 151,600,140 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03157,929,222 - 157,964,758 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43146,427,611 - 146,463,147 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.13146,333,345 - 146,368,742 (-)NCBI
Celera3143,257,857 - 143,293,409 (-)NCBICelera
Cytogenetic Map3q42NCBI
FER1L4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12424,509,734 - 24,543,589 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2424,154,950 - 24,188,711 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02425,202,278 - 25,236,121 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.12424,488,664 - 24,522,490 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02424,583,825 - 24,617,532 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02425,023,084 - 25,056,904 (-)NCBIUU_Cfam_GSD_1.0

Variants

.
Variants in FER1L4
1031 total Variants

Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_013985330   ⟹   XP_013840784
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11738,900,118 - 38,945,936 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_013840784 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSSCP00000075314
  ENSSSCP00000075314.1
  ENSSSCP00000080441.1
  ENSSSCP00070012331.1
Reference Protein Sequences
RefSeq Acc Id: XP_013840784   ⟸   XM_013985330
- UniProtKB: A0A4X1T8F6 (UniProtKB/TrEMBL)
- Sequence:
Protein Domains
C2


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000057781 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00070007663 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000099200.1 UniProtKB/TrEMBL
  ENSSSCT00000102087 ENTREZGENE
  ENSSSCT00000102087.1 UniProtKB/TrEMBL
  ENSSSCT00070014905.1 UniProtKB/TrEMBL
Gene3D-CATH C2 domain UniProtKB/TrEMBL
InterPro C2_dom UniProtKB/TrEMBL
  C2_domain_sf UniProtKB/TrEMBL
  C2A_Ferlin UniProtKB/TrEMBL
  C2B_Ferlin UniProtKB/TrEMBL
  C2C_Ferlin UniProtKB/TrEMBL
  C2D_Ferlin UniProtKB/TrEMBL
  C2E_Ferlin UniProtKB/TrEMBL
  C2F_Ferlin UniProtKB/TrEMBL
  FerIin_dom UniProtKB/TrEMBL
  Ferlin UniProtKB/TrEMBL
  Ferlin_B-domain UniProtKB/TrEMBL
  Ferlin_C UniProtKB/TrEMBL
NCBI Gene FER1L4 ENTREZGENE
PANTHER FER-1-LIKE UniProtKB/TrEMBL
  FER-1-LIKE PROTEIN 4 UniProtKB/TrEMBL
Pfam FerB UniProtKB/TrEMBL
  FerI UniProtKB/TrEMBL
  Ferlin_C UniProtKB/TrEMBL
  PF00168 UniProtKB/TrEMBL
PROSITE PS50004 UniProtKB/TrEMBL
SMART FerB UniProtKB/TrEMBL
  FerI UniProtKB/TrEMBL
  SM00239 UniProtKB/TrEMBL
Superfamily-SCOP C2 domain (Calcium/lipid-binding domain, CaLB) UniProtKB/TrEMBL
UniProt A0A4X1T8F6 ENTREZGENE, UniProtKB/TrEMBL
  A0A8W4F7U3_PIG UniProtKB/TrEMBL
  A0A8W4FQ28_PIG UniProtKB/TrEMBL
VGNC ID VGNC:109147 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-03-28 FER1L4  fer-1 like family member 4  FER1L4  fer-1-like protein 4  Symbol and/or name change 19259463 PROVISIONAL