PHF10 (PHD finger protein 10) - Rat Genome Database

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Gene: PHF10 (PHD finger protein 10) Sus scrofa
Analyze
Symbol: PHF10
Name: PHD finger protein 10
RGD ID: 13970122
Description: ENCODES a protein that exhibits metal ion binding (inferred); INVOLVED IN embryonic brain development (ortholog); PARTICIPATES IN SWI/SNF family mediated chromatin remodeling pathway; ASSOCIATED WITH genetic disease (ortholog); FOUND IN npBAF complex (inferred); nucleoplasm (inferred); nucleus (inferred)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1556,911 - 576,708 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11555,649 - 576,781 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21933,787 - 954,103 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
npBAF complex  (IEA)
nucleoplasm  (IEA)
nucleus  (IEA)

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:14681463   PMID:17145712   PMID:22301074  


Genomics

Comparative Map Data
PHF10
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1556,911 - 576,708 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11555,649 - 576,781 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21933,787 - 954,103 (+)NCBISscrofa10.2Sscrofa10.2susScr3
PHF10
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh386169,703,902 - 169,724,500 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl6169,703,902 - 169,725,566 (-)EnsemblGRCh38hg38GRCh38
GRCh376170,103,998 - 170,124,596 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 366169,845,926 - 169,865,909 (-)NCBINCBI36Build 36hg18NCBI36
Celera6170,814,186 - 170,834,281 (-)NCBICelera
Cytogenetic Map6q27NCBI
HuRef6167,523,776 - 167,540,978 (-)NCBIHuRef
CHM1_16170,366,215 - 170,386,295 (-)NCBICHM1_1
T2T-CHM13v2.06171,057,816 - 171,078,422 (-)NCBIT2T-CHM13v2.0
Phf10
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391715,165,269 - 15,181,550 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1715,165,271 - 15,181,535 (-)EnsemblGRCm39 Ensembl
GRCm381714,944,994 - 14,961,260 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1714,945,009 - 14,961,273 (-)EnsemblGRCm38mm10GRCm38
MGSCv371715,081,999 - 15,098,237 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361714,681,585 - 14,697,808 (-)NCBIMGSCv36mm8
MGSCv361714,105,368 - 14,152,496 (-)NCBIMGSCv36mm8
Celera1715,745,693 - 15,760,216 (-)NCBICelera
Cytogenetic Map17A2NCBI
cM Map178.95NCBI
Phf10
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8164,625,373 - 64,642,110 (-)NCBIGRCr8
mRatBN7.2155,952,249 - 55,968,994 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl155,952,253 - 55,969,038 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx160,812,693 - 60,829,019 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0169,469,840 - 69,486,178 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0162,722,648 - 62,738,974 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0156,951,516 - 56,967,893 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl156,951,518 - 56,967,895 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0158,134,862 - 58,191,474 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4153,874,298 - 53,890,546 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1153,877,244 - 53,893,500 (-)NCBI
Celera152,164,139 - 52,178,581 (-)NCBICelera
Cytogenetic Map1q12NCBI
Phf10
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554113,911,791 - 3,930,912 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554113,911,966 - 3,926,995 (+)NCBIChiLan1.0ChiLan1.0
PHF10
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v25189,954,547 - 189,974,816 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan16187,837,963 - 187,858,568 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v06167,776,108 - 167,796,711 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.16172,608,779 - 172,831,580 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl6172,608,894 - 172,831,584 (-)Ensemblpanpan1.1panPan2
PHF10
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11271,955,354 - 71,998,283 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1271,787,082 - 71,998,243 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1271,715,498 - 71,738,111 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01272,836,777 - 72,859,418 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1272,836,777 - 72,880,794 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11272,188,968 - 72,211,754 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01272,030,491 - 72,053,136 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01272,419,516 - 72,442,396 (-)NCBIUU_Cfam_GSD_1.0
Phf10
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404946150,906,165 - 150,925,222 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648918,156,705 - 18,173,617 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493648918,158,164 - 18,177,122 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PHF10
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11397,512,754 - 97,532,903 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1397,512,867 - 97,532,896 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604069,507,714 - 69,528,037 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Phf10
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248505,633,973 - 5,652,271 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248505,633,967 - 5,652,283 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in PHF10
181 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium
Low 10 4 3 5 2 23 2 3 3
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSSSCT00000004429   ⟹   ENSSSCP00000004328
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1555,355 - 576,713 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000004435   ⟹   ENSSSCP00000004334
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1556,911 - 576,705 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000031463   ⟹   ENSSSCP00000027478
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1556,964 - 576,708 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000056161   ⟹   ENSSSCP00000053589
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1557,066 - 576,706 (+)Ensembl
RefSeq Acc Id: XM_005659097   ⟹   XP_005659154
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11555,745 - 576,713 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021085631   ⟹   XP_020941290
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11555,745 - 576,713 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021085636   ⟹   XP_020941295
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11556,898 - 576,713 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021085638   ⟹   XP_020941297
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11556,898 - 576,713 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021085643   ⟹   XP_020941302
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11557,065 - 576,713 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021085648   ⟹   XP_020941307
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11555,649 - 576,781 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021085654   ⟹   XP_020941313
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11555,649 - 576,781 (+)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: XP_020941307   ⟸   XM_021085648
- Peptide Label: isoform X5
- UniProtKB: A0A8D0IWC7 (UniProtKB/TrEMBL),   A0A8D0U4C2 (UniProtKB/TrEMBL),   I3LTN1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020941313   ⟸   XM_021085654
- Peptide Label: isoform X6
- UniProtKB: A0A8D1ZFM4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020941290   ⟸   XM_021085631
- Peptide Label: isoform X1
- UniProtKB: A0A8D0Y9S1 (UniProtKB/TrEMBL),   A0A8D1IMJ9 (UniProtKB/TrEMBL),   A0A8D0J6S4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005659154   ⟸   XM_005659097
- Peptide Label: isoform X2
- UniProtKB: A0A8D0RIK7 (UniProtKB/TrEMBL),   A0A287BB79 (UniProtKB/TrEMBL),   A0A8D1IMJ9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020941295   ⟸   XM_021085636
- Peptide Label: isoform X3
- UniProtKB: A0A4X1VWV4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020941297   ⟸   XM_021085638
- Peptide Label: isoform X4
- UniProtKB: A0A4X1VWV4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020941302   ⟸   XM_021085643
- Peptide Label: isoform X2
- UniProtKB: A0A8D0RIK7 (UniProtKB/TrEMBL),   A0A287BB79 (UniProtKB/TrEMBL),   A0A8D1IMJ9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000027478   ⟸   ENSSSCT00000031463
RefSeq Acc Id: ENSSSCP00000053589   ⟸   ENSSSCT00000056161
RefSeq Acc Id: ENSSSCP00000004334   ⟸   ENSSSCT00000004435
RefSeq Acc Id: ENSSSCP00000004328   ⟸   ENSSSCT00000004429
Protein Domains
PHD-type


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000030155 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00005020191 UniProtKB/TrEMBL
  ENSSSCG00015043975 UniProtKB/TrEMBL
  ENSSSCG00025029438 UniProtKB/TrEMBL
  ENSSSCG00030071459 UniProtKB/TrEMBL
  ENSSSCG00035067563 UniProtKB/TrEMBL
  ENSSSCG00040012071 UniProtKB/TrEMBL
  ENSSSCG00045030205 UniProtKB/TrEMBL
  ENSSSCG00050071778 UniProtKB/TrEMBL
  ENSSSCG00055026957 UniProtKB/TrEMBL
  ENSSSCG00060022211 UniProtKB/TrEMBL
  ENSSSCG00065058273 UniProtKB/TrEMBL
  ENSSSCG00070027349 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000004435.5 UniProtKB/TrEMBL
  ENSSSCT00000031463 ENTREZGENE
  ENSSSCT00000031463.4 UniProtKB/TrEMBL
  ENSSSCT00000056161 ENTREZGENE
  ENSSSCT00000056161.2 UniProtKB/TrEMBL
  ENSSSCT00005031943.1 UniProtKB/TrEMBL
  ENSSSCT00005031974.1 UniProtKB/TrEMBL
  ENSSSCT00015058608.1 UniProtKB/TrEMBL
  ENSSSCT00015058959.1 UniProtKB/TrEMBL
  ENSSSCT00025040285.1 UniProtKB/TrEMBL
  ENSSSCT00025040412.1 UniProtKB/TrEMBL
  ENSSSCT00030100051.1 UniProtKB/TrEMBL
  ENSSSCT00030100140.1 UniProtKB/TrEMBL
  ENSSSCT00030100252.1 UniProtKB/TrEMBL
  ENSSSCT00030100295.1 UniProtKB/TrEMBL
  ENSSSCT00035091162.1 UniProtKB/TrEMBL
  ENSSSCT00035091199.1 UniProtKB/TrEMBL
  ENSSSCT00035091248.1 UniProtKB/TrEMBL
  ENSSSCT00040015846.1 UniProtKB/TrEMBL
  ENSSSCT00040015868.1 UniProtKB/TrEMBL
  ENSSSCT00040015906.1 UniProtKB/TrEMBL
  ENSSSCT00040015932.1 UniProtKB/TrEMBL
  ENSSSCT00040015947.1 UniProtKB/TrEMBL
  ENSSSCT00045051974.1 UniProtKB/TrEMBL
  ENSSSCT00045052130.1 UniProtKB/TrEMBL
  ENSSSCT00045052328.1 UniProtKB/TrEMBL
  ENSSSCT00050097989.1 UniProtKB/TrEMBL
  ENSSSCT00050098006.1 UniProtKB/TrEMBL
  ENSSSCT00055053431.1 UniProtKB/TrEMBL
  ENSSSCT00055053566.1 UniProtKB/TrEMBL
  ENSSSCT00055053628.1 UniProtKB/TrEMBL
  ENSSSCT00060030148.1 UniProtKB/TrEMBL
  ENSSSCT00060030150.1 UniProtKB/TrEMBL
  ENSSSCT00060030154.1 UniProtKB/TrEMBL
  ENSSSCT00060030160.1 UniProtKB/TrEMBL
  ENSSSCT00065079743.1 UniProtKB/TrEMBL
  ENSSSCT00065079750.1 UniProtKB/TrEMBL
  ENSSSCT00065079756.1 UniProtKB/TrEMBL
  ENSSSCT00070054854.1 UniProtKB/TrEMBL
  ENSSSCT00070054856.1 UniProtKB/TrEMBL
Gene3D-CATH 3.30.40.10 UniProtKB/TrEMBL
InterPro PHF10 UniProtKB/TrEMBL
  Znf_FYVE_PHD UniProtKB/TrEMBL
  Znf_PHD UniProtKB/TrEMBL
  Znf_PHD-finger UniProtKB/TrEMBL
  Znf_RING/FYVE/PHD UniProtKB/TrEMBL
NCBI Gene PHF10 ENTREZGENE
PANTHER HL01030P-RELATED UniProtKB/TrEMBL
  PHD FINGER PROTEIN 10 UniProtKB/TrEMBL
Pfam PHD UniProtKB/TrEMBL
PROSITE ZF_PHD_2 UniProtKB/TrEMBL
SMART PHD UniProtKB/TrEMBL
Superfamily-SCOP SSF57903 UniProtKB/TrEMBL
UniProt A0A287BB79 ENTREZGENE, UniProtKB/TrEMBL
  A0A480SJW0_PIG UniProtKB/TrEMBL
  A0A4X1VWV4 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0IWC7 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0J1S0_PIG UniProtKB/TrEMBL
  A0A8D0J6S4 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0RIK7 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0U4C2 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0Y8M4_PIG UniProtKB/TrEMBL
  A0A8D0Y9S1 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1B485_PIG UniProtKB/TrEMBL
  A0A8D1DFF1_PIG UniProtKB/TrEMBL
  A0A8D1IMJ9 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1L4S2_PIG UniProtKB/TrEMBL
  A0A8D1L4T9_PIG UniProtKB/TrEMBL
  A0A8D1UQY7_PIG UniProtKB/TrEMBL
  A0A8D1ZFM4 ENTREZGENE, UniProtKB/TrEMBL
  I3LTN1 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary F1SC00 UniProtKB/TrEMBL
VGNC ID VGNC:91376 ENTREZGENE