RELCH (RAB11 binding and LisH domain, coiled-coil and HEAT repeat containing) - Rat Genome Database
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Gene: RELCH (RAB11 binding and LisH domain, coiled-coil and HEAT repeat containing) Sus scrofa
Analyze
Symbol: RELCH
Name: RAB11 binding and LisH domain, coiled-coil and HEAT repeat containing
RGD ID: 13969702
Description: INVOLVED IN intracellular cholesterol transport (inferred); ASSOCIATED WITH chromosome 18q deletion syndrome (ortholog); multiple congenital anomalies-hypotonia-seizures syndrome 1 (ortholog); FOUND IN recycling endosome (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: KIAA1468; lisH domain and HEAT repeat-containing protein KIAA1468 homolog
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1159,207,616 - 159,317,641 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11159,207,951 - 159,317,675 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21176,670,499 - 176,781,315 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

Genomics

Comparative Map Data
RELCH
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1159,207,616 - 159,317,641 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11159,207,951 - 159,317,675 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21176,670,499 - 176,781,315 (-)NCBISscrofa10.2Sscrofa10.2susScr3
RELCH
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1862,187,255 - 62,310,217 (+)EnsemblGRCh38hg38GRCh38
GRCh38.p13 Ensembl1862,187,255 - 62,310,249 (+)EnsemblGRCh38hg38GRCh38
GRCh381862,187,255 - 62,310,249 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh371859,854,488 - 59,977,482 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361858,005,504 - 58,125,335 (+)NCBINCBI36hg18NCBI36
Build 341858,039,436 - 58,124,183NCBI
Celera1856,573,751 - 56,693,583 (+)NCBI
Cytogenetic Map18q21.33NCBI
HuRef1856,565,413 - 56,685,241 (+)NCBIHuRef
CHM1_11859,850,036 - 59,969,896 (+)NCBICHM1_1
Relch
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391105,591,570 - 105,682,856 (+)NCBIGRCm39mm39
GRCm39 Ensembl1105,591,586 - 105,682,916 (+)Ensembl
GRCm381105,663,843 - 105,755,131 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1105,663,861 - 105,755,191 (+)EnsemblGRCm38mm10GRCm38
MGSCv371107,560,438 - 107,651,708 (+)NCBIGRCm37mm9NCBIm37
MGSCv361107,491,460 - 107,581,622 (+)NCBImm8
Celera1108,513,201 - 108,605,107 (+)NCBICelera
Cytogenetic Map1E2.1NCBI
Relch
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21321,806,972 - 21,902,807 (+)NCBI
Rnor_6.0 Ensembl1325,656,983 - 25,752,792 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.01325,656,983 - 25,752,792 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01330,820,433 - 30,915,037 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41311,834,138 - 11,930,253 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11311,834,129 - 11,930,186 (+)NCBI
Celera1321,677,556 - 21,772,993 (+)NCBICelera
Cytogenetic Map13p11NCBI
Relch
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540246,115,066 - 46,224,752 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540246,114,835 - 46,226,330 (+)NCBIChiLan1.0ChiLan1.0
RELCH
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11858,875,414 - 58,995,036 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1858,875,013 - 58,995,036 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01855,557,276 - 55,677,161 (+)NCBIMhudiblu_PPA_v0panPan3
RELCH
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl114,579,381 - 14,683,555 (-)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.1114,573,377 - 14,683,795 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Relch
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_0049364973,021,962 - 3,121,028 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RELCH
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11817,467,242 - 17,589,433 (-)NCBI
ChlSab1.1 Ensembl1817,466,750 - 17,589,413 (-)Ensembl
Relch
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247927,916,354 - 8,012,976 (+)NCBI


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 10 2 3 5 23 2 3 3
Low 2 2
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSSSCT00000055242   ⟹   ENSSSCP00000044051
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1159,207,960 - 159,317,624 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000055331   ⟹   ENSSSCP00000032385
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1159,207,959 - 159,317,628 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000063628   ⟹   ENSSSCP00000046178
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1159,207,616 - 159,317,641 (-)Ensembl
RefSeq Acc Id: XM_003121702   ⟹   XP_003121750
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11159,207,951 - 159,317,671 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005654481   ⟹   XP_005654538
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11159,207,951 - 159,317,675 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005654482   ⟹   XP_005654539
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11159,207,952 - 159,317,669 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021099712   ⟹   XP_020955371
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11159,207,951 - 159,317,669 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021099721   ⟹   XP_020955380
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11159,207,951 - 159,317,669 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021099741   ⟹   XP_020955400
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11159,207,951 - 159,317,669 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021099750   ⟹   XP_020955409
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11159,227,574 - 159,317,669 (-)NCBI
Sequence:
RefSeq Acc Id: XR_002346074
RefSeq Status:
Type: NON-CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11159,207,951 - 159,317,669 (-)NCBI
Sequence:
RefSeq Acc Id: XR_002346082
RefSeq Status:
Type: NON-CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11159,209,114 - 159,317,669 (-)NCBI
Sequence:
RefSeq Acc Id: XR_002346087
RefSeq Status:
Type: NON-CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11159,207,951 - 159,317,669 (-)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: XP_005654538   ⟸   XM_005654481
- Peptide Label: isoform X3
- UniProtKB: A0A287BQJ1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_003121750   ⟸   XM_003121702
- Peptide Label: isoform X4
- UniProtKB: A0A287AQ39 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020955400   ⟸   XM_021099741
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_020955380   ⟸   XM_021099721
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_020955371   ⟸   XM_021099712
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_005654539   ⟸   XM_005654482
- Peptide Label: isoform X6
- UniProtKB: A0A286ZTI4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020955409   ⟸   XM_021099750
- Peptide Label: isoform X7
- Sequence:
RefSeq Acc Id: ENSSSCP00000044051   ⟸   ENSSSCT00000055242
RefSeq Acc Id: ENSSSCP00000032385   ⟸   ENSSSCT00000055331
RefSeq Acc Id: ENSSSCP00000046178   ⟸   ENSSSCT00000063628
Protein Domains
LisH


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000004899 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00070011383 UniProtKB/TrEMBL
Ensembl Protein ENSSSCP00000032385 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCP00000044051 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCP00000046178 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCP00070018432 UniProtKB/TrEMBL
  ENSSSCP00070018442 UniProtKB/TrEMBL
  ENSSSCP00070018453 UniProtKB/TrEMBL
  ENSSSCP00070018463 UniProtKB/TrEMBL
  ENSSSCP00070018477 UniProtKB/TrEMBL
  ENSSSCP00070018506 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000055242 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCT00000055331 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCT00000063628 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCT00070022262 UniProtKB/TrEMBL
  ENSSSCT00070022278 UniProtKB/TrEMBL
  ENSSSCT00070022289 UniProtKB/TrEMBL
  ENSSSCT00070022304 UniProtKB/TrEMBL
  ENSSSCT00070022319 UniProtKB/TrEMBL
  ENSSSCT00070022353 UniProtKB/TrEMBL
Gene3D-CATH 1.25.10.10 UniProtKB/TrEMBL
InterPro ARM-like UniProtKB/TrEMBL
  ARM-type_fold UniProtKB/TrEMBL
  HEAT_type_2 UniProtKB/TrEMBL
  LisH UniProtKB/TrEMBL
  RELCH UniProtKB/TrEMBL
KEGG Report ssc:100521354 UniProtKB/TrEMBL
NCBI Gene RELCH ENTREZGENE
PANTHER PTHR32059 UniProtKB/TrEMBL
PROSITE HEAT_REPEAT UniProtKB/TrEMBL
  LISH UniProtKB/TrEMBL
SMART LisH UniProtKB/TrEMBL
Superfamily-SCOP SSF48371 UniProtKB/TrEMBL
UniProt A0A286ZLE0_PIG UniProtKB/TrEMBL
  A0A286ZTI4 ENTREZGENE
  A0A287AJI7_PIG UniProtKB/TrEMBL
  A0A287AQ39 ENTREZGENE, UniProtKB/TrEMBL
  A0A287BQJ1 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1TNE6_PIG UniProtKB/TrEMBL
  A0A4X1TT09_PIG UniProtKB/TrEMBL
  A0A4X1TT32_PIG UniProtKB/TrEMBL
  A0A4X1TT42_PIG UniProtKB/TrEMBL
  A0A4X1TT53_PIG UniProtKB/TrEMBL
  A0A4X1TT64_PIG UniProtKB/TrEMBL
VGNC ID VGNC:92205 ENTREZGENE