ZWINT (ZW10 interacting kinetochore protein) - Rat Genome Database

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Gene: ZWINT (ZW10 interacting kinetochore protein) Sus scrofa
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Symbol: ZWINT
Name: ZW10 interacting kinetochore protein
RGD ID: 13969478
Description: INVOLVED IN homologous chromosome orientation in meiotic metaphase I (ortholog); regulation of meiosis I spindle assembly checkpoint (ortholog); ASSOCIATED WITH COVID-19 (ortholog); genetic disease (ortholog); hepatocellular carcinoma (ortholog); FOUND IN dendrite (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: ZW10 interactor
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1494,094,894 - 94,102,060 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11494,094,781 - 94,109,447 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.214102,560,703 - 102,610,775 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (IEA)
cytosol  (IBA,IEA)
dendrite  (IBA,ISO)
kinetochore  (IBA,IEA)
Knl1/Spc105 complex  (IEA)
membrane  (IEA)
nuclear body  (IBA,IEA)
nucleoplasm  (IEA)

Molecular Function

References
Additional References at PubMed
PMID:14681463   PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
ZWINT
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1494,094,894 - 94,102,060 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11494,094,781 - 94,109,447 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.214102,560,703 - 102,610,775 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ZWINT
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381056,357,227 - 56,361,273 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1056,357,227 - 56,361,273 (-)EnsemblGRCh38hg38GRCh38
GRCh371058,116,988 - 58,121,034 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361057,787,205 - 57,791,040 (-)NCBINCBI36Build 36hg18NCBI36
Build 341057,787,204 - 57,791,040NCBI
Celera1051,380,359 - 51,384,194 (-)NCBICelera
Cytogenetic Map10q21.1NCBI
HuRef1052,100,166 - 52,104,002 (-)NCBIHuRef
CHM1_11058,399,021 - 58,402,856 (-)NCBICHM1_1
T2T-CHM13v2.01057,207,567 - 57,211,612 (-)NCBIT2T-CHM13v2.0
Zwint
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391072,490,678 - 72,510,796 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1072,490,677 - 72,510,796 (+)EnsemblGRCm39 Ensembl
GRCm381072,654,846 - 72,674,964 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1072,654,845 - 72,674,964 (+)EnsemblGRCm38mm10GRCm38
MGSCv371072,117,643 - 72,132,537 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361072,050,213 - 72,070,263 (+)NCBIMGSCv36mm8
Celera1073,721,825 - 73,736,719 (+)NCBICelera
Cytogenetic Map10B5.3NCBI
cM Map1037.15NCBI
Zwint
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82015,502,559 - 15,953,701 (-)NCBIGRCr8
mRatBN7.22015,938,157 - 15,953,997 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2015,938,157 - 15,953,957 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2016,649,159 - 16,664,966 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02016,004,145 - 16,019,952 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02016,476,752 - 16,492,559 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02017,075,781 - 17,091,715 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2017,075,771 - 17,091,766 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02019,258,272 - 19,274,238 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera2017,366,344 - 17,382,150 (-)NCBICelera
Cytogenetic Map20p11NCBI
Zwint
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542510,477,331 - 10,486,288 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542510,477,224 - 10,486,372 (-)NCBIChiLan1.0ChiLan1.0
ZWINT
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2868,652,375 - 68,660,157 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11068,657,697 - 68,665,829 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01052,978,892 - 52,986,797 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11055,202,564 - 55,206,450 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1055,202,383 - 55,206,450 (-)Ensemblpanpan1.1panPan2
ZWINT
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12632,432,385 - 32,459,377 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2632,432,406 - 32,453,162 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2632,311,125 - 32,367,927 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02633,957,126 - 34,013,841 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.12631,858,877 - 31,915,636 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02631,447,375 - 31,504,073 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02632,649,687 - 32,706,484 (+)NCBIUU_Cfam_GSD_1.0
Zwint
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440721372,225,358 - 72,237,265 (+)NCBIHiC_Itri_2
SpeTri2.0NW_0049366931,539,987 - 1,551,685 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ZWINT
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1974,912,070 - 74,915,920 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl974,912,093 - 74,915,926 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604835,825,925 - 35,829,966 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Zwint
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247917,528,426 - 7,534,553 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247917,528,452 - 7,534,182 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in ZWINT
296 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium
Low 7 2 3 5 12 2 3
Below cutoff 3 2 11 1 1

Sequence


RefSeq Acc Id: ENSSSCT00000028498   ⟹   ENSSSCP00000021056
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1494,094,894 - 94,102,060 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000047401   ⟹   ENSSSCP00000048827
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1494,094,887 - 94,109,532 (+)Ensembl
RefSeq Acc Id: XM_003359284   ⟹   XP_003359332
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11494,094,818 - 94,109,447 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013983492   ⟹   XP_013838946
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11494,094,781 - 94,102,087 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013983494   ⟹   XP_013838948
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11494,094,817 - 94,102,087 (+)NCBI
Sequence:
RefSeq Acc Id: XR_002338428
Type: NON-CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11494,094,818 - 94,109,447 (+)NCBI
Sequence:
RefSeq Acc Id: XP_013838946   ⟸   XM_013983492
- UniProtKB: I3LAI8 (UniProtKB/TrEMBL),   A0A4X1VCE7 (UniProtKB/TrEMBL),   A0A8D0PQZ7 (UniProtKB/TrEMBL),   A0A8D1CJI3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013838948   ⟸   XM_013983494
- UniProtKB: I3LAI8 (UniProtKB/TrEMBL),   A0A4X1VCE7 (UniProtKB/TrEMBL),   A0A8D0PQZ7 (UniProtKB/TrEMBL),   A0A8D1CJI3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_003359332   ⟸   XM_003359284
- UniProtKB: I3LAI8 (UniProtKB/TrEMBL),   A0A4X1VCE7 (UniProtKB/TrEMBL),   A0A8D0PQZ7 (UniProtKB/TrEMBL),   A0A8D1CJI3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000021056   ⟸   ENSSSCT00000028498
RefSeq Acc Id: ENSSSCP00000048827   ⟸   ENSSSCT00000047401


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000027984 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00005032172 UniProtKB/TrEMBL
  ENSSSCG00015067526 UniProtKB/TrEMBL
  ENSSSCG00025008406 UniProtKB/TrEMBL
  ENSSSCG00030053619 UniProtKB/TrEMBL
  ENSSSCG00035000646 UniProtKB/TrEMBL
  ENSSSCG00040034070 UniProtKB/TrEMBL
  ENSSSCG00045006139 UniProtKB/TrEMBL
  ENSSSCG00050005749 UniProtKB/TrEMBL
  ENSSSCG00055029376 UniProtKB/TrEMBL
  ENSSSCG00060037843 UniProtKB/TrEMBL
  ENSSSCG00065063368 UniProtKB/TrEMBL
  ENSSSCG00070022928 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000028498 ENTREZGENE
  ENSSSCT00000028498.3 UniProtKB/TrEMBL
  ENSSSCT00005051329.1 UniProtKB/TrEMBL
  ENSSSCT00005051453.1 UniProtKB/TrEMBL
  ENSSSCT00005051481.1 UniProtKB/TrEMBL
  ENSSSCT00015090650.1 UniProtKB/TrEMBL
  ENSSSCT00025011208.1 UniProtKB/TrEMBL
  ENSSSCT00030074781.1 UniProtKB/TrEMBL
  ENSSSCT00030074798.1 UniProtKB/TrEMBL
  ENSSSCT00035000729.1 UniProtKB/TrEMBL
  ENSSSCT00040045834.1 UniProtKB/TrEMBL
  ENSSSCT00040045856.1 UniProtKB/TrEMBL
  ENSSSCT00040045954.1 UniProtKB/TrEMBL
  ENSSSCT00045010194.1 UniProtKB/TrEMBL
  ENSSSCT00050007794.1 UniProtKB/TrEMBL
  ENSSSCT00050007801.1 UniProtKB/TrEMBL
  ENSSSCT00055058298.1 UniProtKB/TrEMBL
  ENSSSCT00055058325.1 UniProtKB/TrEMBL
  ENSSSCT00055058349.1 UniProtKB/TrEMBL
  ENSSSCT00060051180.1 UniProtKB/TrEMBL
  ENSSSCT00065086942.1 UniProtKB/TrEMBL
  ENSSSCT00070045628.1 UniProtKB/TrEMBL
  ENSSSCT00070045631.1 UniProtKB/TrEMBL
InterPro Zwint-1 UniProtKB/TrEMBL
KEGG Report ssc:100623641 UniProtKB/TrEMBL
NCBI Gene ZWINT ENTREZGENE
PANTHER PTHR31504 UniProtKB/TrEMBL
  ZW10 INTERACTOR UniProtKB/TrEMBL
Pfam Zwint UniProtKB/TrEMBL
UniProt A0A4X1VCE7 ENTREZGENE
  A0A8D0PQZ7 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0UH42_PIG UniProtKB/TrEMBL
  A0A8D0XG07_PIG UniProtKB/TrEMBL
  A0A8D1CJI3 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1EDI5_PIG UniProtKB/TrEMBL
  A0A8D1S2Y5_PIG UniProtKB/TrEMBL
  A0A8D1SK14_PIG UniProtKB/TrEMBL
  I3LAI8 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary A0A4X1VCE7 UniProtKB/TrEMBL
VGNC ID VGNC:95342 ENTREZGENE