CCNA1 (cyclin A1) - Rat Genome Database

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Gene: CCNA1 (cyclin A1) Sus scrofa
Analyze
Symbol: CCNA1
Name: cyclin A1
RGD ID: 13968367
Description: PARTICIPATES IN G1/S transition pathway; ASSOCIATED WITH acute myeloid leukemia (ortholog); head and neck squamous cell carcinoma (ortholog); hepatocellular carcinoma (ortholog); FOUND IN cyclin A1-CDK2 complex (inferred); microtubule cytoskeleton (inferred)
Type: protein-coding
RefSeq Status: MODEL
Also known as: cyclin-A1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1112,396,301 - 12,405,353 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11112,396,149 - 12,405,357 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21112,355,480 - 12,364,742 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:14681463   PMID:23836398  


Genomics

Comparative Map Data
CCNA1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1112,396,301 - 12,405,353 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11112,396,149 - 12,405,357 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21112,355,480 - 12,364,742 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CCNA1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1336,431,520 - 36,442,870 (+)EnsemblGRCh38hg38GRCh38
GRCh381336,430,488 - 36,442,870 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh371337,006,092 - 37,017,007 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361335,904,633 - 35,915,008 (+)NCBINCBI36hg18NCBI36
Build 341335,904,632 - 35,915,008NCBI
Celera1318,073,175 - 18,084,229 (+)NCBI
Cytogenetic Map13q13.3NCBI
HuRef1317,817,953 - 17,828,979 (+)NCBIHuRef
CHM1_11336,973,445 - 36,984,499 (+)NCBICHM1_1
Ccna1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39354,952,890 - 54,965,055 (-)NCBIGRCm39mm39
GRCm39 Ensembl354,952,890 - 54,962,922 (-)Ensembl
GRCm38355,045,469 - 55,057,634 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl355,045,469 - 55,055,501 (-)EnsemblGRCm38mm10GRCm38
MGSCv37354,849,391 - 54,858,977 (-)NCBIGRCm37mm9NCBIm37
MGSCv36355,133,404 - 55,142,984 (-)NCBImm8
Celera354,763,020 - 54,772,599 (-)NCBICelera
Cytogenetic Map3CNCBI
Ccna1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.22139,231,738 - 139,278,066 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl2139,201,074 - 139,243,157 (-)Ensembl
Rnor_6.02144,456,689 - 144,503,570 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2144,458,153 - 144,467,912 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02163,874,794 - 163,886,211 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42144,275,211 - 144,285,196 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.12144,225,173 - 144,235,159 (-)NCBI
Celera2133,716,972 - 133,726,933 (-)NCBICelera
Cytogenetic Map2q26NCBI
Ccna1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554319,658,015 - 9,668,087 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554319,658,301 - 9,668,659 (-)NCBIChiLan1.0ChiLan1.0
CCNA1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11336,080,331 - 36,092,078 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1336,080,331 - 36,092,078 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01317,649,064 - 17,660,550 (+)NCBIMhudiblu_PPA_v0panPan3
CCNA1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1254,189,457 - 4,198,170 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl254,189,457 - 4,198,373 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha254,219,718 - 4,228,956 (-)NCBI
ROS_Cfam_1.0254,288,085 - 4,297,327 (-)NCBI
ROS_Cfam_1.0 Ensembl254,281,774 - 4,296,521 (-)Ensembl
UMICH_Zoey_3.1254,195,452 - 4,204,690 (-)NCBI
UNSW_CanFamBas_1.0254,191,619 - 4,200,848 (-)NCBI
UU_Cfam_GSD_1.0254,255,371 - 4,264,612 (-)NCBI
Ccna1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404945165,363,959 - 165,379,007 (-)NCBI
SpeTri2.0NW_00493647230,574,957 - 30,586,596 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CCNA1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1314,979,775 - 14,992,609 (+)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl314,982,392 - 14,993,562 (+)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366605729,300,504 - 29,312,984 (-)NCBIVero_WHO_p1.0
Ccna1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_004624776941,107 - 951,256 (-)NCBIHetGla_female_1.0hetGla2


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

endocrine system nervous system reproductive system
High
Medium
Low 3 10 1
Below cutoff 9

Sequence


Reference Sequences
RefSeq Acc Id: ENSSSCT00000010251   ⟹   ENSSSCP00000009984
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1112,396,301 - 12,405,353 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000045284   ⟹   ENSSSCP00000035390
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1112,396,301 - 12,405,353 (+)Ensembl
RefSeq Acc Id: XM_005668339   ⟹   XP_005668396
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11112,396,149 - 12,405,357 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005668341   ⟹   XP_005668398
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11112,396,177 - 12,405,357 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013980450   ⟹   XP_013835904
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11112,396,175 - 12,405,357 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021065569   ⟹   XP_020921228
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11112,396,332 - 12,405,357 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005668396 (Get FASTA)   NCBI Sequence Viewer  
  XP_005668398 (Get FASTA)   NCBI Sequence Viewer  
  XP_013835904 (Get FASTA)   NCBI Sequence Viewer  
  XP_020921228 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_005668396   ⟸   XM_005668339
- UniProtKB: F1RSR0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013835904   ⟸   XM_013980450
- UniProtKB: F1RSR0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005668398   ⟸   XM_005668341
- UniProtKB: F1RSR0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020921228   ⟸   XM_021065569
- Sequence:
RefSeq Acc Id: ENSSSCP00000009984   ⟸   ENSSSCT00000010251
RefSeq Acc Id: ENSSSCP00000035390   ⟸   ENSSSCT00000045284
Protein Domains
Cyclin N-terminal


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000009354 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00070006083 UniProtKB/TrEMBL
Ensembl Protein ENSSSCP00000009984 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCP00000035390 UniProtKB/TrEMBL
  ENSSSCP00070009547 UniProtKB/TrEMBL
  ENSSSCP00070009555 UniProtKB/TrEMBL
  ENSSSCP00070009566 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000010251 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCT00000045284 UniProtKB/TrEMBL
  ENSSSCT00070011593 UniProtKB/TrEMBL
  ENSSSCT00070011602 UniProtKB/TrEMBL
  ENSSSCT00070011613 UniProtKB/TrEMBL
InterPro Cyclin UniProtKB/TrEMBL
  Cyclin-like UniProtKB/TrEMBL
  Cyclin-like_sf UniProtKB/TrEMBL
  Cyclin_C-dom UniProtKB/TrEMBL
  Cyclin_N UniProtKB/TrEMBL
KEGG Report ssc:100156017 UniProtKB/TrEMBL
NCBI Gene CCNA1 ENTREZGENE
PANTHER PTHR10177 UniProtKB/TrEMBL
Pfam Cyclin_C UniProtKB/TrEMBL
  Cyclin_N UniProtKB/TrEMBL
PROSITE CYCLINS UniProtKB/TrEMBL
SMART CYCLIN UniProtKB/TrEMBL
  Cyclin_C UniProtKB/TrEMBL
Superfamily-SCOP SSF47954 UniProtKB/TrEMBL
UniProt A0A286ZUS6_PIG UniProtKB/TrEMBL
  A0A4X1T2N4_PIG UniProtKB/TrEMBL
  A0A4X1T478_PIG UniProtKB/TrEMBL
  F1RSR0 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:86348 ENTREZGENE