MTRES1 (mitochondrial transcription rescue factor 1) - Rat Genome Database

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Gene: MTRES1 (mitochondrial transcription rescue factor 1) Sus scrofa
Analyze
Symbol: MTRES1
Name: mitochondrial transcription rescue factor 1
RGD ID: 13968129
Description: ENCODES a protein that exhibits ribosomal large subunit binding (inferred); RNA binding (inferred); tRNA binding (inferred); INVOLVED IN regulation of mitochondrial transcription (inferred); rescue of stalled ribosome (inferred); ASSOCIATED WITH Charcot-Marie-Tooth disease type 4 (ortholog); FOUND IN mitochondrial matrix (inferred); mitochondrion (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: C1H6orf203; C6orf203; chromosome 1 C6orf203 homolog; Uncharacterized protein C6orf203; uncharacterized protein C6orf203 homolog
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl173,162,364 - 73,180,017 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1173,162,330 - 73,174,266 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:14681463   PMID:15679890   PMID:17145712  


Genomics

Comparative Map Data
MTRES1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl173,162,364 - 73,180,017 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1173,162,330 - 73,174,266 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
MTRES1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh386107,028,199 - 107,051,586 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl6107,028,199 - 107,051,586 (+)EnsemblGRCh38hg38GRCh38
GRCh376107,349,403 - 107,372,790 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 366107,456,110 - 107,479,238 (+)NCBINCBI36Build 36hg18NCBI36
Build 346107,456,109 - 107,479,238NCBI
Celera6108,097,763 - 108,120,882 (+)NCBICelera
Cytogenetic Map6q21NCBI
HuRef6104,921,421 - 104,943,891 (+)NCBIHuRef
CHM1_16107,612,048 - 107,635,159 (+)NCBICHM1_1
T2T-CHM13v2.06108,207,085 - 108,230,443 (+)NCBIT2T-CHM13v2.0
Mtres1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391043,401,115 - 43,417,037 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1043,401,129 - 43,416,990 (-)EnsemblGRCm39 Ensembl
GRCm381043,525,119 - 43,541,041 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1043,525,133 - 43,540,994 (-)EnsemblGRCm38mm10GRCm38
MGSCv371043,244,927 - 43,260,800 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361043,213,536 - 43,229,409 (-)NCBIMGSCv36mm8
Celera1044,391,825 - 44,407,796 (-)NCBICelera
Cytogenetic Map10B2NCBI
cM Map1023.01NCBI
Mtres1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82048,604,479 - 48,622,364 (-)NCBIGRCr8
mRatBN7.22047,022,343 - 47,038,888 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2047,022,342 - 47,038,805 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2048,736,829 - 48,753,174 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02048,386,835 - 48,403,008 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02049,071,634 - 49,088,055 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02048,276,101 - 48,294,975 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2048,275,762 - 48,294,948 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02049,934,857 - 49,950,906 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera2052,949,435 - 52,966,218 (+)NCBICelera
Cytogenetic Map20q13NCBI
Mtres1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541132,318,079 - 32,341,989 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541132,318,079 - 32,338,597 (+)NCBIChiLan1.0ChiLan1.0
MTRES1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v25127,044,353 - 127,068,253 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan16124,931,922 - 124,955,569 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v06104,839,280 - 104,862,854 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.16108,709,555 - 108,729,976 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl6108,709,803 - 108,729,976 (+)Ensemblpanpan1.1panPan2
MTRES1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11264,278,569 - 64,293,999 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1264,244,529 - 64,303,579 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1264,065,280 - 64,080,933 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01265,122,203 - 65,137,957 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1265,122,128 - 65,147,799 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11264,482,216 - 64,497,961 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01264,326,248 - 64,341,811 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01264,599,931 - 64,615,890 (+)NCBIUU_Cfam_GSD_1.0
Mtres1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494699,192,327 - 99,207,645 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365643,467,192 - 3,482,720 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365643,467,223 - 3,482,507 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MTRES1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11366,798,141 - 66,818,964 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1366,798,134 - 66,807,567 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604039,125,651 - 39,146,174 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Mtres1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462478015,233,566 - 15,246,178 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462478015,233,686 - 15,246,172 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in MTRES1
112 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 1 1 2 2 1
Low 10 3 2 5 21 1 3 3
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSSSCT00000059292   ⟹   ENSSSCP00000056953
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl173,162,364 - 73,180,017 (+)Ensembl
RefSeq Acc Id: XM_021090588   ⟹   XP_020946247
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1173,162,352 - 73,174,266 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021090591   ⟹   XP_020946250
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1173,162,330 - 73,174,266 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021090596   ⟹   XP_020946255
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1173,162,353 - 73,174,266 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021090599   ⟹   XP_020946258
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1173,165,155 - 73,174,266 (+)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: XP_020946250   ⟸   XM_021090591
- UniProtKB: A0A4X1VD90 (UniProtKB/TrEMBL),   A0A0B8RTW2 (UniProtKB/TrEMBL),   A0A8D1AIL4 (UniProtKB/TrEMBL),   A0A8D0T4J4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020946247   ⟸   XM_021090588
- UniProtKB: A0A4X1VD90 (UniProtKB/TrEMBL),   A0A0B8RTW2 (UniProtKB/TrEMBL),   A0A8D1AIL4 (UniProtKB/TrEMBL),   A0A8D0T4J4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020946255   ⟸   XM_021090596
- UniProtKB: A0A4X1VD90 (UniProtKB/TrEMBL),   A0A0B8RTW2 (UniProtKB/TrEMBL),   A0A8D1AIL4 (UniProtKB/TrEMBL),   A0A8D0T4J4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020946258   ⟸   XM_021090599
- UniProtKB: A0A4X1VD90 (UniProtKB/TrEMBL),   A0A0B8RTW2 (UniProtKB/TrEMBL),   A0A8D1AIL4 (UniProtKB/TrEMBL),   A0A8D0T4J4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000056953   ⟸   ENSSSCT00000059292


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000037985 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00005033102 UniProtKB/TrEMBL
  ENSSSCG00025068461 UniProtKB/TrEMBL
  ENSSSCG00030062547 UniProtKB/TrEMBL
  ENSSSCG00035062677 UniProtKB/TrEMBL
  ENSSSCG00040073287 UniProtKB/TrEMBL
  ENSSSCG00045017194 UniProtKB/TrEMBL
  ENSSSCG00050070912 UniProtKB/TrEMBL
  ENSSSCG00055014697 UniProtKB/TrEMBL
  ENSSSCG00060043896 UniProtKB/TrEMBL
  ENSSSCG00065018515 UniProtKB/TrEMBL
  ENSSSCG00070023557 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000059292 ENTREZGENE
  ENSSSCT00000059292.3 UniProtKB/TrEMBL
  ENSSSCT00005052838.1 UniProtKB/TrEMBL
  ENSSSCT00005052893.1 UniProtKB/TrEMBL
  ENSSSCT00025094027.1 UniProtKB/TrEMBL
  ENSSSCT00030087503.1 UniProtKB/TrEMBL
  ENSSSCT00035084237.1 UniProtKB/TrEMBL
  ENSSSCT00040101152.1 UniProtKB/TrEMBL
  ENSSSCT00045029259.1 UniProtKB/TrEMBL
  ENSSSCT00050096716.1 UniProtKB/TrEMBL
  ENSSSCT00055028988.1 UniProtKB/TrEMBL
  ENSSSCT00060059524.1 UniProtKB/TrEMBL
  ENSSSCT00065024602.1 UniProtKB/TrEMBL
  ENSSSCT00070046945.1 UniProtKB/TrEMBL
NCBI Gene C1H6orf203 ENTREZGENE
PANTHER MITOCHONDRIAL TRANSCRIPTION RESCUE FACTOR 1 UniProtKB/TrEMBL
  PTHR13633 UniProtKB/TrEMBL
PROSITE PS50889 UniProtKB/TrEMBL
UniProt A0A0B8RTW2 ENTREZGENE
  A0A481A0E5_PIG UniProtKB/TrEMBL
  A0A4X1VD90 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0T4J4 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1AIL4 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary A0A287BK29 UniProtKB/TrEMBL
VGNC ID VGNC:90469 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-07-02 MTRES1  mitochondrial transcription rescue factor 1  C1H6orf203  chromosome 1 C6orf203 homolog  Symbol and/or name change 5135510 APPROVED