CDON (cell adhesion associated, oncogene regulated) - Rat Genome Database

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Gene: CDON (cell adhesion associated, oncogene regulated) Sus scrofa
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Symbol: CDON
Name: cell adhesion associated, oncogene regulated
RGD ID: 13967731
Description: INVOLVED IN anterior/posterior pattern specification (ortholog); cell adhesion (ortholog); cell fate specification (ortholog); PARTICIPATES IN Hedgehog signaling pathway; p38 MAPK signaling pathway; ASSOCIATED WITH coloboma (ortholog); Dwarfism (ortholog); gastrointestinal stromal tumor (ortholog); FOUND IN cell surface (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: cell adhesion molecule-related/down-regulated by oncogenes
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl953,079,550 - 53,178,881 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1953,079,543 - 53,178,881 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
JBrowse: View Region in Genome Browser (JBrowse)
Model


Molecular Pathway Annotations     Click to see Annotation Detail View
References

Genomics

Comparative Map Data
CDON
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl953,079,550 - 53,178,881 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1953,079,543 - 53,178,881 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
CDON
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl11125,955,796 - 126,063,335 (-)EnsemblGRCh38hg38GRCh38
GRCh3811125,956,813 - 126,063,335 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh3711125,826,716 - 125,933,187 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3611125,331,923 - 125,438,397 (-)NCBINCBI36hg18NCBI36
Build 3411125,335,783 - 125,438,397NCBI
Celera11122,988,054 - 123,098,575 (-)NCBI
Cytogenetic Map11q24.2NCBI
HuRef11121,768,684 - 121,875,085 (-)NCBIHuRef
CHM1_111125,713,444 - 125,819,847 (-)NCBICHM1_1
Cdon
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39935,332,823 - 35,418,948 (+)NCBIGRCm39mm39
GRCm39 Ensembl935,332,424 - 35,418,948 (+)Ensembl
GRCm38935,421,528 - 35,507,652 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl935,421,128 - 35,507,652 (+)EnsemblGRCm38mm10GRCm38
MGSCv37935,259,661 - 35,315,237 (+)NCBIGRCm37mm9NCBIm37
MGSCv36935,201,747 - 35,254,013 (+)NCBImm8
Celera932,686,755 - 32,744,725 (+)NCBICelera
Cytogenetic Map9A4NCBI
Cdon
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2833,775,123 - 33,861,635 (+)NCBI
Rnor_6.0 Ensembl836,625,733 - 36,710,949 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0836,625,757 - 36,712,091 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0836,642,905 - 36,728,577 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4835,238,899 - 35,291,743 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1835,247,664 - 35,300,509 (+)NCBI
Celera835,227,303 - 35,280,140 (+)NCBICelera
Cytogenetic Map8q21NCBI
Cdon
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541227,003,919 - 27,065,989 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541227,004,391 - 27,093,968 (-)NCBIChiLan1.0ChiLan1.0
CDON
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.111124,685,084 - 124,789,649 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl11124,685,084 - 124,786,091 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v011120,772,160 - 120,877,529 (-)NCBIMhudiblu_PPA_v0panPan3
CDON
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.158,439,606 - 8,536,088 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl58,446,346 - 8,533,426 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha58,496,514 - 8,595,988 (+)NCBI
ROS_Cfam_1.058,391,957 - 8,491,851 (+)NCBI
UMICH_Zoey_3.158,460,126 - 8,560,018 (+)NCBI
UNSW_CanFamBas_1.058,434,443 - 8,534,264 (+)NCBI
UU_Cfam_GSD_1.058,468,718 - 8,568,231 (+)NCBI
Cdon
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947108,178,109 - 108,358,526 (-)NCBI
SpeTri2.0NW_0049365726,176,267 - 6,268,885 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CDON
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11117,091,778 - 117,255,354 (-)NCBI
ChlSab1.1 Ensembl1117,092,178 - 117,152,030 (-)Ensembl
Vero_WHO_p1.0NW_0236660438,742,602 - 8,983,460 (+)NCBI
Cdon
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_004624812107,632 - 203,791 (-)NCBI


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 2 1 1
Low 7 3 3 4 2 23 2 3 1
Below cutoff 1

Sequence


Reference Sequences
RefSeq Acc Id: ENSSSCT00000025358   ⟹   ENSSSCP00000023294
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl953,079,550 - 53,178,881 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000053678   ⟹   ENSSSCP00000042905
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl953,079,550 - 53,178,881 (-)Ensembl
RefSeq Acc Id: XM_021063103   ⟹   XP_020918762
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1953,079,543 - 53,178,881 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021063104   ⟹   XP_020918763
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1953,079,543 - 53,176,560 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021063105   ⟹   XP_020918764
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1953,079,543 - 53,178,530 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021063106   ⟹   XP_020918765
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1953,079,543 - 53,176,596 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021063108   ⟹   XP_020918767
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1953,079,543 - 53,175,106 (-)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: XP_020918762   ⟸   XM_021063103
- Sequence:
RefSeq Acc Id: XP_020918764   ⟸   XM_021063105
- Sequence:
RefSeq Acc Id: XP_020918765   ⟸   XM_021063106
- Sequence:
RefSeq Acc Id: XP_020918763   ⟸   XM_021063104
- Sequence:
RefSeq Acc Id: XP_020918767   ⟸   XM_021063108
- Sequence:
RefSeq Acc Id: ENSSSCP00000023294   ⟸   ENSSSCT00000025358
RefSeq Acc Id: ENSSSCP00000042905   ⟸   ENSSSCT00000053678
Protein Domains
Fibronectin type-III   Ig-like


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000022504 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00070024041 UniProtKB/TrEMBL
Ensembl Protein ENSSSCP00000023294 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCP00000042905 UniProtKB/TrEMBL
  ENSSSCP00070040533 UniProtKB/TrEMBL
  ENSSSCP00070040542 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000025358 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCT00000053678 UniProtKB/TrEMBL
  ENSSSCT00070048017 UniProtKB/TrEMBL
  ENSSSCT00070048026 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.10 UniProtKB/TrEMBL
InterPro CDO UniProtKB/TrEMBL
  FN3_dom UniProtKB/TrEMBL
  FN3_sf UniProtKB/TrEMBL
  Ig-like_dom UniProtKB/TrEMBL
  Ig-like_dom_sf UniProtKB/TrEMBL
  Ig-like_fold UniProtKB/TrEMBL
  Ig_I-set UniProtKB/TrEMBL
  Ig_sub UniProtKB/TrEMBL
  Ig_sub2 UniProtKB/TrEMBL
NCBI Gene CDON ENTREZGENE
PANTHER PTHR44170:SF1 UniProtKB/TrEMBL
Pfam fn3 UniProtKB/TrEMBL
  I-set UniProtKB/TrEMBL
PROSITE FN3 UniProtKB/TrEMBL
  IG_LIKE UniProtKB/TrEMBL
SMART FN3 UniProtKB/TrEMBL
  IGc2 UniProtKB/TrEMBL
  SM00409 UniProtKB/TrEMBL
Superfamily-SCOP SSF48726 UniProtKB/TrEMBL
  SSF49265 UniProtKB/TrEMBL
UniProt A0A287AFV9_PIG UniProtKB/TrEMBL
  A0A4X1VBM8_PIG UniProtKB/TrEMBL
  A0A4X1VFK4_PIG UniProtKB/TrEMBL
  I3LGV0_PIG UniProtKB/TrEMBL
VGNC ID VGNC:86519 ENTREZGENE