CCAR2 (cell cycle and apoptosis regulator 2) - Rat Genome Database

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Gene: CCAR2 (cell cycle and apoptosis regulator 2) Sus scrofa
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Symbol: CCAR2
Name: cell cycle and apoptosis regulator 2
RGD ID: 13966870
Description: ENCODES a protein that exhibits enzyme binding (inferred); enzyme inhibitor activity (inferred); RNA polymerase II complex binding (inferred); INVOLVED IN mitochondrial fragmentation involved in apoptotic process (inferred); negative regulation of cell growth (inferred); negative regulation of DNA-templated transcription (inferred); ASSOCIATED WITH Conotruncal Cardiac Defects (ortholog); genetic disease (ortholog); Wallerian Degeneration (ortholog); FOUND IN chromatin (inferred); cytoplasm (inferred); DBIRD complex (inferred)
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: cell cycle and apoptosis regulator protein 2; KIAA1967
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl146,859,664 - 6,874,327 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1146,860,052 - 6,874,334 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2147,339,782 - 7,354,405 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

References
Additional References at PubMed
PMID:14681463   PMID:30032202  


Genomics

Comparative Map Data
CCAR2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl146,859,664 - 6,874,327 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1146,860,052 - 6,874,334 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2147,339,782 - 7,354,405 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CCAR2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38822,604,757 - 22,621,514 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl822,604,757 - 22,620,964 (+)EnsemblGRCh38hg38GRCh38
GRCh37822,462,270 - 22,479,027 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36822,518,202 - 22,533,929 (+)NCBINCBI36Build 36hg18NCBI36
Celera821,423,997 - 21,439,838 (+)NCBICelera
Cytogenetic Map8p21.3NCBI
HuRef821,004,993 - 21,021,131 (+)NCBIHuRef
CHM1_1822,664,337 - 22,680,196 (+)NCBICHM1_1
T2T-CHM13v2.0822,878,640 - 22,895,418 (+)NCBIT2T-CHM13v2.0
Ccar2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391470,375,617 - 70,391,272 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1470,375,613 - 70,391,260 (-)EnsemblGRCm39 Ensembl
GRCm381470,138,168 - 70,153,791 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1470,138,164 - 70,153,811 (-)EnsemblGRCm38mm10GRCm38
MGSCv371470,537,975 - 70,553,598 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361468,873,247 - 68,888,885 (-)NCBIMGSCv36mm8
Celera1467,678,907 - 67,694,533 (-)NCBICelera
Cytogenetic Map14D2NCBI
cM Map1436.24NCBI
Ccar2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81551,622,519 - 51,637,911 (-)NCBIGRCr8
mRatBN7.21545,212,797 - 45,228,001 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1545,212,803 - 45,227,636 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1549,330,656 - 49,345,795 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01550,442,150 - 50,457,289 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01547,301,466 - 47,316,605 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01551,818,887 - 51,834,443 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1551,818,897 - 51,834,030 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01555,545,040 - 55,560,184 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41550,539,438 - 50,554,576 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11550,555,211 - 50,570,748 (-)NCBI
Celera1544,892,449 - 44,907,584 (-)NCBICelera
Cytogenetic Map15p11NCBI
Ccar2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540346,027,998 - 46,042,154 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540346,027,997 - 46,042,154 (+)NCBIChiLan1.0ChiLan1.0
CCAR2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2741,111,699 - 41,127,454 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1816,836,895 - 16,852,627 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0821,854,803 - 21,870,556 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1818,792,993 - 18,809,354 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl818,794,027 - 18,808,571 (+)Ensemblpanpan1.1panPan2
CCAR2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12534,660,026 - 34,674,129 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2534,660,553 - 34,674,037 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2535,249,731 - 35,263,899 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02534,869,533 - 34,883,707 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2534,869,234 - 34,883,644 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12534,815,987 - 34,830,156 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02534,670,068 - 34,684,232 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02534,825,592 - 34,839,752 (-)NCBIUU_Cfam_GSD_1.0
Ccar2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494312,213,836 - 12,229,045 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365556,341,390 - 6,356,668 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365556,341,455 - 6,356,677 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CCAR2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1820,685,482 - 20,700,424 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl820,686,504 - 20,699,707 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605221,526,509 - 21,541,748 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ccar2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475818,106,606 - 18,120,907 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475818,106,621 - 18,120,910 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in CCAR2
402 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 10 3 3 5 1 21 2 3 3
Low 1 1 2
Below cutoff

Sequence


RefSeq Acc Id: ENSSSCT00000010555   ⟹   ENSSSCP00000010279
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl146,859,664 - 6,874,327 (+)Ensembl
RefSeq Acc Id: NM_001206340   ⟹   NP_001193269
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1146,860,052 - 6,874,334 (+)NCBI
Sequence:
RefSeq Acc Id: NP_001193269   ⟸   NM_001206340
- UniProtKB: A0A8D0JD23 (UniProtKB/TrEMBL),   F1RMA3 (UniProtKB/TrEMBL),   A0A8D0J4Q4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000010279   ⟸   ENSSSCT00000010555

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000009628 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00005021707 UniProtKB/TrEMBL
  ENSSSCG00015066186 UniProtKB/TrEMBL
  ENSSSCG00025022948 UniProtKB/TrEMBL
  ENSSSCG00030044258 UniProtKB/TrEMBL
  ENSSSCG00035036784 UniProtKB/TrEMBL
  ENSSSCG00040057771 UniProtKB/TrEMBL
  ENSSSCG00045035192 UniProtKB/TrEMBL
  ENSSSCG00050077487 UniProtKB/TrEMBL
  ENSSSCG00055025473 UniProtKB/TrEMBL
  ENSSSCG00060004539 UniProtKB/TrEMBL
  ENSSSCG00065007786 UniProtKB/TrEMBL
  ENSSSCG00070023870 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000010555 ENTREZGENE
  ENSSSCT00000010555.5 UniProtKB/TrEMBL
  ENSSSCT00005035526.1 UniProtKB/TrEMBL
  ENSSSCT00005035585.1 UniProtKB/TrEMBL
  ENSSSCT00005035719.1 UniProtKB/TrEMBL
  ENSSSCT00005035776.1 UniProtKB/TrEMBL
  ENSSSCT00005035809.1 UniProtKB/TrEMBL
  ENSSSCT00005035855.1 UniProtKB/TrEMBL
  ENSSSCT00015089307.1 UniProtKB/TrEMBL
  ENSSSCT00025031212.1 UniProtKB/TrEMBL
  ENSSSCT00030061732.1 UniProtKB/TrEMBL
  ENSSSCT00030061781.1 UniProtKB/TrEMBL
  ENSSSCT00035048745.1 UniProtKB/TrEMBL
  ENSSSCT00035048753.1 UniProtKB/TrEMBL
  ENSSSCT00040078734.1 UniProtKB/TrEMBL
  ENSSSCT00045060975.1 UniProtKB/TrEMBL
  ENSSSCT00050106652.1 UniProtKB/TrEMBL
  ENSSSCT00050106676.1 UniProtKB/TrEMBL
  ENSSSCT00055050383.1 UniProtKB/TrEMBL
  ENSSSCT00055050506.1 UniProtKB/TrEMBL
  ENSSSCT00055050644.1 UniProtKB/TrEMBL
  ENSSSCT00060005642.1 UniProtKB/TrEMBL
  ENSSSCT00060005652.1 UniProtKB/TrEMBL
  ENSSSCT00065010447.1 UniProtKB/TrEMBL
  ENSSSCT00065010452.1 UniProtKB/TrEMBL
  ENSSSCT00070047653.1 UniProtKB/TrEMBL
  ENSSSCT00070047659.1 UniProtKB/TrEMBL
InterPro BURAN UniProtKB/TrEMBL
  CCAR1/CCAR2 UniProtKB/TrEMBL
  DBC1/CARP1_inactive_NUDIX_dom UniProtKB/TrEMBL
  EF-hand-dom_pair UniProtKB/TrEMBL
  LAIKA UniProtKB/TrEMBL
  S1-like_RNA-bd_dom UniProtKB/TrEMBL
KEGG Report ssc:100155718 UniProtKB/TrEMBL
NCBI Gene CCAR2 ENTREZGENE
PANTHER PTHR14304 UniProtKB/TrEMBL
  PTHR14304:SF12 UniProtKB/TrEMBL
Pfam BURAN UniProtKB/TrEMBL
  DBC1 UniProtKB/TrEMBL
  LAIKA UniProtKB/TrEMBL
  S1-like UniProtKB/TrEMBL
SMART DBC1 UniProtKB/TrEMBL
Superfamily-SCOP Myosin rod fragments UniProtKB/TrEMBL
  SSF47473 UniProtKB/TrEMBL
UniProt A0A4X1VER4_PIG UniProtKB/TrEMBL
  A0A4X1VHD6_PIG UniProtKB/TrEMBL
  A0A8D0J4Q4 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0J6R8_PIG UniProtKB/TrEMBL
  A0A8D0JD23 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0LMN8_PIG UniProtKB/TrEMBL
  A0A8D0PPF7_PIG UniProtKB/TrEMBL
  A0A8D1SND6_PIG UniProtKB/TrEMBL
  A0A8D1XI51_PIG UniProtKB/TrEMBL
  F1RMA3 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:86239 ENTREZGENE